HHsearch alignment for GI: 254780567 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=95.78 E-value=0.0084 Score=37.12 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
T Consensus 29 sl~~f~i~G~tGAGKtsLldAI~yA 53 (1063)
T TIGR00618 29 SLKLFVICGKTGAGKTSLLDAITYA 53 (1063)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 2573677788998354599999998