HHsearch alignment for GI: 254780567 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.65 E-value=5.3e-15 Score=112.23 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=140.5
Q ss_pred CCCCEEECCCH-----HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH--------HHHHHHHHH
Q ss_conf 84541653618-----99999998510167884999878777868899999986276201356--------764445466
Q gi|254780567|r 39 SRDDLLVHSAI-----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI--------AKSLDSILI 105 (246)
Q Consensus 39 ~~dnFiv~~~N-----~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~--------~~~~~~~~~ 105 (246)
T Consensus 2 ~L~eFi-GQ~~vk~~L~l~I~AAk~R~e-~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt~L 79 (305)
T TIGR00635 2 LLAEFI-GQEKVKEQLQLFIEAAKMRQE-ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL 79 (305)
T ss_pred CCHHCC-CCHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 801105-828899999999999982489-734166317568746789999999838932674067554757899999705
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH-HHHHHHC----------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEE
Q ss_conf 66665334332100376103354-5554311----------------234215640354320022345667885212224
Q gi|254780567|r 106 DTRKPVLLEDIDLLDFNDTQLFH-IINSIHQ----------------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 (246)
Q Consensus 106 ~~~~~i~iddi~~~~~~ee~lf~-l~n~~~~----------------~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~ 168 (246)
T Consensus 80 ~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G~lt--~P-LrdRFG--~~~ 154 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLT--SP-LRDRFG--IIL 154 (305)
T ss_pred CCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC--CC-HHHHHH--HHH
T ss_conf 6896310125650483345310530012178778712898525760686944200003477410--31-334544--745
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5078897899999999866628979889999999406679899999999999-9999847787889999999867
Q gi|254780567|r 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 169 ~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld-~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
T Consensus 155 rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDfA~V~~~~~I~~~i~~~AL~~L 229 (305)
T TIGR00635 155 RLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQGVITRDIALKALEML 229 (305)
T ss_pred HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 402689878999987533441430077899999875478637888776766448887267873889999998862