HHsearch alignment for GI: 254780567 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.77 E-value=2.2e-07 Score=65.36 Aligned_cols=173 Identities=17% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH------------H----HHHHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 678849998787778688999999862762013567644------------4----54666666533433210037610-
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------D----SILIDTRKPVLLEDIDLLDFNDT- 124 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~i~iddi~~~~~~ee- 124 (246)
T Consensus 238 ePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeimsky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e 317 (980)
T TIGR01243 238 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE 317 (980)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCC
T ss_conf 99873587558986178999998753055178850603443313630789999998653058707874121100764100
Q ss_pred -----------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf -----------335455543112342156403543200223456678852122245078897899999999866628979
Q gi|254780567|r 125 -----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 (246)
Q Consensus 125 -----------~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l 193 (246)
T Consensus 318 ~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~d---PalrrPGrfdrei~~~~Pd~~~r~eil~~h--tr~mP~ 392 (980)
T TIGR01243 318 VTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALD---PALRRPGRFDREIEIGVPDKEGRKEILQIH--TRNMPL 392 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---HHHCCCCCCCCEEEECCCCHHHHHHHHHHH--HCCCCC
T ss_conf 001688999999999974002487289981468850026---224278864433574188545678888764--147875
Q ss_pred CHHHH----HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 88999----99994066798999999999999999847787889999999867
Q gi|254780567|r 194 DKKLA----AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 194 ~~~v~----~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
T Consensus 393 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 442 (980)
T TIGR01243 393 AEDVDKDAVIKVLKDLEKDERFEKEKIEKI---IEKVSKANSEDEIKEILKED 442 (980)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_conf 011005789999987666556678899999---99886310267899997501