HHsearch alignment for GI: 254780567 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.47 E-value=1.4e-12 Score=97.34 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=132.0
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHHHHHC-CCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH----------H--
Q ss_conf 7766884541653618999999985101-678-8499987877786889999998627620135676----------4--
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAVRLIDSWPS-WPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK----------S-- 99 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~~~i~~~~~-~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~----------~-- 99 (246)
T Consensus 8 yRP~-~F~d~~-GQ--~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g 82 (363)
T TIGR02397 8 YRPQ-TFEDVI-GQ--EHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSG 82 (363)
T ss_pred CCCC-CCCCCC-CC--HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCC
T ss_conf 3788-611023-51--79999999999718966234502859976355899999986588-7877877775022776528
Q ss_pred -------------HHH-------------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCHH
Q ss_conf -------------445-------------4666666533433210037610335455543112342-1564035432002
Q gi|254780567|r 100 -------------LDS-------------ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTFPVSWG 152 (246)
Q Consensus 100 -------------~~~-------------~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~p~~~~ 152 (246)
T Consensus 83 ~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~--~AFNALLKTLEEPP~hV~FIlATTE~~KiP 160 (363)
T TIGR02397 83 SSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSK--SAFNALLKTLEEPPEHVVFILATTEPHKIP 160 (363)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHCCCCCCEEEEEECCCHHHCC
T ss_conf 986668864865687889999987303687554433588732302865--689998765227987628887348711205
Q ss_pred HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC---C
Q ss_conf 2345667885212224507889789999999986662897988999999940667989999999999999998477---8
Q gi|254780567|r 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM---G 229 (246)
Q Consensus 153 ~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr---~ 229 (246)
T Consensus 161 ---~TIlSRCQ---rF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~---~~~~~~~DG~ 231 (363)
T TIGR02397 161 ---ATILSRCQ---RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQA---ISFGNGSDGK 231 (363)
T ss_pred ---CCCEEECE---EECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH---HHHCCCCCCC
T ss_conf ---54021000---31267899899999999999870883177899999996289610688999999---9826887886
Q ss_pred CCHHHHHHHHHH
Q ss_conf 788999999986
Q gi|254780567|r 230 ITRSLAAEVLKE 241 (246)
Q Consensus 230 ITi~lvk~vL~~ 241 (246)
T Consensus 232 i~~~~v~~~lGl 243 (363)
T TIGR02397 232 ITYEDVNEMLGL 243 (363)
T ss_pred CCHHHHHHHHCC
T ss_conf 578999998357