HHsearch alignment for GI: 254780567 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.47  E-value=1.4e-12  Score=97.34  Aligned_cols=192  Identities=15%  Similarity=0.159  Sum_probs=132.0

Q ss_pred             CCCCCCCCCEEECCCHHHHHHHHHHHHC-CCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH----------H--
Q ss_conf             7766884541653618999999985101-678-8499987877786889999998627620135676----------4--
Q gi|254780567|r   34 RCLGISRDDLLVHSAIEQAVRLIDSWPS-WPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK----------S--   99 (246)
Q Consensus        34 ~~~~~~~dnFiv~~~N~~A~~~i~~~~~-~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~----------~--   99 (246)
T Consensus         8 yRP~-~F~d~~-GQ--~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g   82 (363)
T TIGR02397         8 YRPQ-TFEDVI-GQ--EHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSG   82 (363)
T ss_pred             CCCC-CCCCCC-CC--HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCC
T ss_conf             3788-611023-51--79999999999718966234502859976355899999986588-7877877775022776528


Q ss_pred             -------------HHH-------------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCHH
Q ss_conf             -------------445-------------4666666533433210037610335455543112342-1564035432002
Q gi|254780567|r  100 -------------LDS-------------ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTFPVSWG  152 (246)
Q Consensus       100 -------------~~~-------------~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~p~~~~  152 (246)
T Consensus        83 ~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~--~AFNALLKTLEEPP~hV~FIlATTE~~KiP  160 (363)
T TIGR02397        83 SSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSK--SAFNALLKTLEEPPEHVVFILATTEPHKIP  160 (363)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHCCCCCCEEEEEECCCHHHCC
T ss_conf             986668864865687889999987303687554433588732302865--689998765227987628887348711205


Q ss_pred             HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC---C
Q ss_conf             2345667885212224507889789999999986662897988999999940667989999999999999998477---8
Q gi|254780567|r  153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM---G  229 (246)
Q Consensus       153 ~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr---~  229 (246)
T Consensus       161 ---~TIlSRCQ---rF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~---~~~~~~~DG~  231 (363)
T TIGR02397       161 ---ATILSRCQ---RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQA---ISFGNGSDGK  231 (363)
T ss_pred             ---CCCEEECE---EECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH---HHHCCCCCCC
T ss_conf             ---54021000---31267899899999999999870883177899999996289610688999999---9826887886


Q ss_pred             CCHHHHHHHHHH
Q ss_conf             788999999986
Q gi|254780567|r  230 ITRSLAAEVLKE  241 (246)
Q Consensus       230 ITi~lvk~vL~~  241 (246)
T Consensus       232 i~~~~v~~~lGl  243 (363)
T TIGR02397       232 ITYEDVNEMLGL  243 (363)
T ss_pred             CCHHHHHHHHCC
T ss_conf             578999998357