HHsearch alignment for GI: 254780567 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=95.17 E-value=0.012 Score=36.24 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=31.7
Q ss_pred HHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999998510-16788499987877786889999998627620
Q gi|254780567|r 51 QAVRLIDSWP-SWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 51 ~A~~~i~~~~-~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
T Consensus 139 tGvRaiDGlLTcG~GQRiGIFA~aG~GKSTLL~~i~~g~~ADv 181 (430)
T TIGR02546 139 TGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV 181 (430)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCE
T ss_conf 1466754344036653057870888616689999861898878