>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..

Probab=98.45 E-value=1e-06 Score=61.26 Aligned_cols=187 Identities=18% Similarity=0.261 Sum_probs=111.3 Q ss_pred EECCCHH--HHHHHHHHHHC---CCCC---EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH------------------ Q ss_conf 6536189--99999985101---6788---49998787778688999999862762013567------------------ Q gi|254780567|r 44 LVHSAIE--QAVRLIDSWPS---WPSR---VVILVGPSGSGKSCLANIWSDKSRSTRFSNIA------------------ 97 (246) Q Consensus 44 iv~~~N~--~A~~~i~~~~~---~~~~---~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~------------------ 97 (246) T Consensus 499 IfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmEKHTVsRLIGsPPG 578 (774) T TIGR02639 499 IFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIGSPPG 578 (774) T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 15158999999999999874247788816888864798962578899999970820010465044689999874168888 Q ss_pred --------HHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHC----------CCCCEEEEECCCCCCHHH----- Q ss_conf --------64445466666653343321003761-033545554311----------234215640354320022----- Q gi|254780567|r 98 --------KSLDSILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQ----------YDSSLLMTARTFPVSWGV----- 153 (246) Q Consensus 98 --------~~~~~~~~~~~~~i~iddi~~~~~~e-e~lf~l~n~~~~----------~~~~iilts~~~p~~~~~----- 153 (246) T Consensus 579 YVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVILIMTSNaGa~E~~~~~iGF 658 (774) T TIGR02639 579 YVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAREMSKNPIGF 658 (774) T ss_pred CCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCCCCCCCCCCCCC T ss_conf 51316777212233128853542346666313366678766335434058885763113688840370010236776442 Q ss_pred ----------------HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH-------CC--CCCCHHHHHHHHHCCCCC Q ss_conf ----------------34566788521222450788978999999998666-------28--979889999999406679 Q gi|254780567|r 154 ----------------CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-------RQ--IFIDKKLAAYIVQRMERS 208 (246) Q Consensus 154 ----------------~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~-------r~--i~l~~~v~~yl~~r~~Rs 208 (246) T Consensus 659 ~~~~~~~~~~~Aikk~F~PEFRNRLDa--ii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~~ 736 (774) T TIGR02639 659 GGERVEDKSEKAIKKLFSPEFRNRLDA--IIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVELELTDDAIKYLAEKGYDE 736 (774) T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCC--EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCC T ss_conf 555412334888973158742013346--441699889999999999999999755306537876478999998636781 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 8999999999999999847787889999999 Q gi|254780567|r 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 (246) Q Consensus 209 ~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL 239 (246) T Consensus 737 efGARpl~R~I~-------~~i~~~L~dEIL 760 (774) T TIGR02639 737 EFGARPLARVIQ-------EEIKKPLSDEIL 760 (774) T ss_pred CCCCCHHHHHHH-------HHHHHHHHHHHC T ss_conf 105544899988-------741257654420

HHsearch alignment for GI: 254780567 and conserved domain: TIGR02639