HHsearch alignment for GI: 254780567 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.88 E-value=0.0055 Score=38.25 Aligned_cols=180 Identities=11% Similarity=0.130 Sum_probs=102.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC----------CHHHHHHHH-------------------HHHHHHHHH-HH
Q ss_conf 678849998787778688999999862762----------013567644-------------------454666666-53
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRST----------RFSNIAKSL-------------------DSILIDTRK-PV 111 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~----------~~~~~~~~~-------------------~~~~~~~~~-~i 111 (246)
T Consensus 228 ~KNNPl~-VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anIL 306 (774)
T TIGR02639 228 KKNNPLL-VGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNANIL 306 (774)
T ss_pred CCCCCCE-ECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 6788720-448886448999999998641564670024783454043456410245424789999999998528999546
Q ss_pred HHHHHHCCCCC---CHH---HHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHH--HHHHHHHCCEEEECCCCHHHHHHHH
Q ss_conf 34332100376---103---35455543112342156403543200-223456--6788521222450788978999999
Q gi|254780567|r 112 LLEDIDLLDFN---DTQ---LFHIINSIHQYDSSLLMTARTFPVSW-GVCLPD--LCSRLKAATVVKISLPDDDFLEKVI 182 (246)
Q Consensus 112 ~iddi~~~~~~---ee~---lf~l~n~~~~~~~~iilts~~~p~~~-~~~l~D--L~SRl~~g~~~~I~~pdde~~~~il 182 (246)
T Consensus 307 FIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~-iRCIGsTTy~EY~~~FeKDrALsRRFQ---KIDv~EPs~eet~~IL 382 (774)
T TIGR02639 307 FIDEIHTIVGAGATSGGSMDASNLLKPALASGK-IRCIGSTTYEEYKNHFEKDRALSRRFQ---KIDVGEPSIEETVKIL 382 (774)
T ss_pred EEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-EEEECCCCHHHHHCHHHCCCCCCCCCC---EECCCCCCHHHHHHHH
T ss_conf 641101033178787515524432112530787-786226524864111010202165423---3117957888999999
Q ss_pred HHHH---HH-CCCCCCHHHHHHHHHCCCCCH------HHHHHHHHHHHHHH-----HHHCCC--------------CCHH
Q ss_conf 9986---66-289798899999994066798------99999999999999-----984778--------------7889
Q gi|254780567|r 183 VKMF---AD-RQIFIDKKLAAYIVQRMERSL------VFAEKLVDKMDNLA-----LSRGMG--------------ITRS 233 (246)
Q Consensus 183 ~k~~---~~-r~i~l~~~v~~yl~~r~~Rs~------~~l~~~l~~Ld~~s-----l~~kr~--------------ITi~ 233 (246)
T Consensus 383 kGLk~~YE~fH~V~Y~~eal~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~ 462 (774)
T TIGR02639 383 KGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVK 462 (774)
T ss_pred HHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHH
T ss_conf 86554201325011386999999999888602578985432288999999997120277643201125300047878544
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999998674188
Q gi|254780567|r 234 LAAEVLKETQQCD 246 (246)
Q Consensus 234 lvk~vL~~~~~~d 246 (246)
T Consensus 463 diE~vvak~a~iP 475 (774)
T TIGR02639 463 DIEEVVAKMAKIP 475 (774)
T ss_pred HHHHHHHHHHCCC
T ss_conf 4999998871899