HHsearch alignment for GI: 254780567 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.06 E-value=0.0009 Score=43.08 Aligned_cols=149 Identities=21% Similarity=0.291 Sum_probs=78.8
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHH-HHHHH-----HHHHHHHH
Q ss_conf 165361899999998510167884999878777868899999986276-201356764445-46666-----66533433
Q gi|254780567|r 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAKSLDS-ILIDT-----RKPVLLED 115 (246)
Q Consensus 43 Fiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~~~~~~~~~-~~~~~-----~~~i~idd 115 (246)
T Consensus 1 Fi~t~~v~~v~~R~l~yL~-~G~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~Dqf 79 (265)
T TIGR02640 1 FIETDAVKRVTSRALRYLK-SGYPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQF 79 (265)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 9877237999998766322-788667447888556899999997368968998658232654423154675222232012
Q ss_pred HHCC---------CC----------------------------------CCHHHHHHHHHHHC-------CCCCEEEEEC
Q ss_conf 2100---------37----------------------------------61033545554311-------2342156403
Q gi|254780567|r 116 IDLL---------DF----------------------------------NDTQLFHIINSIHQ-------YDSSLLMTAR 145 (246)
Q Consensus 116 i~~~---------~~----------------------------------~ee~lf~l~n~~~~-------~~~~iilts~ 145 (246)
T Consensus 80 ihnV~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSN 159 (265)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSN 159 (265)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCC
T ss_conf 11134251220026678357899756972766475788620456567555523215888787787225788702463148
Q ss_pred CCCCCHHHHH--HH-HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 5432002234--56-678852122245078897899999999866628979889999999
Q gi|254780567|r 146 TFPVSWGVCL--PD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 (246)
Q Consensus 146 ~~p~~~~~~l--~D-L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~ 202 (246)
T Consensus 160 --p~EYAGVh~~QDALlDRL~---ti~~D~~D~~~e~ai~~~~-----t~~~~~~a~~IV 209 (265)
T TIGR02640 160 --PVEYAGVHETQDALLDRLV---TISMDYPDEDTETAILRAK-----TDVAEESAATIV 209 (265)
T ss_pred --CCCCCCCCCHHHHHHHHHC---CCCCCCCCHHHHHHHHHHH-----HCCCHHHHHHHH
T ss_conf --7010576771667766440---0457854447899999986-----061246789999