HHsearch alignment for GI: 254780567 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.93 E-value=2.7e-08 Score=70.96 Aligned_cols=217 Identities=18% Similarity=0.182 Sum_probs=139.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 50002353481034155888776--68845416536189999999851016788-4999878777868899999986276
Q gi|254780567|r 14 DKQKNDQPKNKEEQLFFSFPRCL--GISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 14 ~~~~~~~~~~~~~Ql~l~~~~~~--~~~~dnFiv~~~N~~A~~~i~~~~~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
T Consensus 35 ESkKEl~kLn~mR~I~Lt~PL~Ek~RP~SF~EIiGQe~--GI~ALKAALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk 112 (532)
T TIGR02902 35 ESKKELDKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEE--GIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKK 112 (532)
T ss_pred CCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 47689987611143416788774667776332567355--6899998606868963898788696178999999998650
Q ss_pred C----------C--HHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHCCC----
Q ss_conf 2----------0--1356764445466666----------------------------------653343321003----
Q gi|254780567|r 91 T----------R--FSNIAKSLDSILIDTR----------------------------------KPVLLEDIDLLD---- 120 (246)
Q Consensus 91 ~----------~--~~~~~~~~~~~~~~~~----------------------------------~~i~iddi~~~~---- 120 (246)
T Consensus 113 ~~~SPFke~A~FVEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~M 192 (532)
T TIGR02902 113 NPASPFKEEAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQM 192 (532)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHH
T ss_conf 87537898866898505103602146666567761585333765457885575877763202586551212466582435
Q ss_pred --------------------CCCHHHHHHHHHHHCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEE--CCCC
Q ss_conf --------------------7610335455543112----3421564035432002234566788521222450--7889
Q gi|254780567|r 121 --------------------FNDTQLFHIINSIHQY----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI--SLPD 174 (246)
Q Consensus 121 --------------------~~ee~lf~l~n~~~~~----~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I--~~pd 174 (246)
T Consensus 193 NKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp---PAlRSRC~-----EIFFR~L~ 264 (532)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP---PALRSRCV-----EIFFRPLL 264 (532)
T ss_pred HHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC---HHHHCCCE-----EEEECCCC
T ss_conf 31411330222000012358777865427899720678734012133369877678---34650522-----67716888
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHH
Q ss_conf 789999999986662897988999999940667989999999999999998477-8788999999986
Q gi|254780567|r 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKE 241 (246)
Q Consensus 175 de~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~~ 241 (246)
T Consensus 265 ~EEi~~iAk~AaeKIg~~l~~~Al~~I~~-Ya~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~ 331 (532)
T TIGR02902 265 KEEIKEIAKNAAEKIGLNLEKEALDLIAK-YASNGREAVNLVQLAAGIALGENRKRILAEDIEWVIES 331 (532)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH
T ss_conf 78999998765653046547547999998-74054067789999731401288761205464455530