HHsearch alignment for GI: 254780567 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.93  E-value=2.7e-08  Score=70.96  Aligned_cols=217  Identities=18%  Similarity=0.182  Sum_probs=139.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             50002353481034155888776--68845416536189999999851016788-4999878777868899999986276
Q gi|254780567|r   14 DKQKNDQPKNKEEQLFFSFPRCL--GISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWSDKSRS   90 (246)
Q Consensus        14 ~~~~~~~~~~~~~Ql~l~~~~~~--~~~~dnFiv~~~N~~A~~~i~~~~~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~   90 (246)
T Consensus        35 ESkKEl~kLn~mR~I~Lt~PL~Ek~RP~SF~EIiGQe~--GI~ALKAALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk  112 (532)
T TIGR02902        35 ESKKELDKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEE--GIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKK  112 (532)
T ss_pred             CCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             47689987611143416788774667776332567355--6899998606868963898788696178999999998650


Q ss_pred             C----------C--HHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHCCC----
Q ss_conf             2----------0--1356764445466666----------------------------------653343321003----
Q gi|254780567|r   91 T----------R--FSNIAKSLDSILIDTR----------------------------------KPVLLEDIDLLD----  120 (246)
Q Consensus        91 ~----------~--~~~~~~~~~~~~~~~~----------------------------------~~i~iddi~~~~----  120 (246)
T Consensus       113 ~~~SPFke~A~FVEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~M  192 (532)
T TIGR02902       113 NPASPFKEEAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQM  192 (532)
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHH
T ss_conf             87537898866898505103602146666567761585333765457885575877763202586551212466582435


Q ss_pred             --------------------CCCHHHHHHHHHHHCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEE--CCCC
Q ss_conf             --------------------7610335455543112----3421564035432002234566788521222450--7889
Q gi|254780567|r  121 --------------------FNDTQLFHIINSIHQY----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI--SLPD  174 (246)
Q Consensus       121 --------------------~~ee~lf~l~n~~~~~----~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I--~~pd  174 (246)
T Consensus       193 NKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp---PAlRSRC~-----EIFFR~L~  264 (532)
T TIGR02902       193 NKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP---PALRSRCV-----EIFFRPLL  264 (532)
T ss_pred             HHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC---HHHHCCCE-----EEEECCCC
T ss_conf             31411330222000012358777865427899720678734012133369877678---34650522-----67716888


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHH
Q ss_conf             789999999986662897988999999940667989999999999999998477-8788999999986
Q gi|254780567|r  175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKE  241 (246)
Q Consensus       175 de~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~~  241 (246)
T Consensus       265 ~EEi~~iAk~AaeKIg~~l~~~Al~~I~~-Ya~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~  331 (532)
T TIGR02902       265 KEEIKEIAKNAAEKIGLNLEKEALDLIAK-YASNGREAVNLVQLAAGIALGENRKRILAEDIEWVIES  331 (532)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH
T ss_conf             78999998765653046547547999998-74054067789999731401288761205464455530