HHsearch alignment for GI: 254780567 and conserved domain: TIGR02974
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=95.22 E-value=0.25 Score=28.04 Aligned_cols=174 Identities=14% Similarity=0.213 Sum_probs=109.0
Q ss_pred EECCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHH---HHHHHHHCC--CCHHHHHHHHHHHHHHHH--------
Q ss_conf 653618999999985101--67884999878777868899---999986276--201356764445466666--------
Q gi|254780567|r 44 LVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLA---NIWSDKSRS--TRFSNIAKSLDSILIDTR-------- 108 (246)
Q Consensus 44 iv~~~N~~A~~~i~~~~~--~~~~~l~i~G~~GsGKTHLl---~a~~~~~~~--~~~~~~~~~~~~~~~~~~-------- 108 (246)
T Consensus 1 liG~S~aF-L~vLeqvS~lA~l~rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFT 79 (349)
T TIGR02974 1 LIGESNAF-LEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFT 79 (349)
T ss_pred CCCCCHHH-HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHH
T ss_conf 98872789-99999875104678866886146746899998853324655488626610127825555665310010013
Q ss_pred ---------------HHHHHHHHHCCCCC-CHHHHHHHHH----------HHCCCCCEEEEECCCCCCHH---HHHHHHH
Q ss_conf ---------------65334332100376-1033545554----------31123421564035432002---2345667
Q gi|254780567|r 109 ---------------KPVLLEDIDLLDFN-DTQLFHIINS----------IHQYDSSLLMTARTFPVSWG---VCLPDLC 159 (246)
Q Consensus 109 ---------------~~i~iddi~~~~~~-ee~lf~l~n~----------~~~~~~~iilts~~~p~~~~---~~l~DL~ 159 (246)
T Consensus 80 GA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN~DLP~lA~~G~FRaDLL 159 (349)
T TIGR02974 80 GAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATNADLPALAAEGRFRADLL 159 (349)
T ss_pred HHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCCCHHH
T ss_conf 03046889854436887388887142167678661201013033017860477351367621413698986589840145
Q ss_pred HHHHHCCEEEECCCC----HHHHHH--HHHHHHHHCCCCC----CHHHHHHHHH-CCCCCHHHHHHHHHHH
Q ss_conf 885212224507889----789999--9999866628979----8899999994-0667989999999999
Q gi|254780567|r 160 SRLKAATVVKISLPD----DDFLEK--VIVKMFADRQIFI----DKKLAAYIVQ-RMERSLVFAEKLVDKM 219 (246)
Q Consensus 160 SRl~~g~~~~I~~pd----de~~~~--il~k~~~~r~i~l----~~~v~~yl~~-r~~Rs~~~l~~~l~~L 219 (246)
T Consensus 160 DRLA-FDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L~~Y~WPGNvRELkNvvERs 229 (349)
T TIGR02974 160 DRLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERS 229 (349)
T ss_pred HHHH-HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 5445-655079788887232789999999999997078655114389999997068888521244467666