HHsearch alignment for GI: 254780567 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.12 E-value=3.3e-05 Score=51.95 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=98.9
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---------CHHHH
Q ss_conf 341558887766884541653618999999985101678849998787778688999999862762---------01356
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST---------RFSNI 96 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~---------~~~~~ 96 (246)
T Consensus 157 ~~y~~dLT~~A~~gklDpviGR-d~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~L 235 (852)
T TIGR03346 157 EKYARDLTERAREGKLDPVIGR-DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred HHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEE
T ss_conf 9998889999982899977383-699999999998732489721279998799999999999866999978851851275
Q ss_pred H---------------HHHHH--HHHHH---HHHHHHHHHHCCCCC--CHH---HHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 7---------------64445--46666---665334332100376--103---35455543112342156403543200
Q gi|254780567|r 97 A---------------KSLDS--ILIDT---RKPVLLEDIDLLDFN--DTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151 (246)
Q Consensus 97 ~---------------~~~~~--~~~~~---~~~i~iddi~~~~~~--ee~---lf~l~n~~~~~~~~iilts~~~p~~~ 151 (246)
T Consensus 236 Dlg~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT-T~~EY 314 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT-TLDEY 314 (852)
T ss_pred EHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CHHHH
T ss_conf 28877521530078999999999999858998799961255532688766641067774378747985599827-89999
Q ss_pred -HHHHHH--HHHHHHHCCEEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHCCCC
Q ss_conf -223456--6788521222450788978999999998----6662897988999999940667
Q gi|254780567|r 152 -GVCLPD--LCSRLKAATVVKISLPDDDFLEKVIVKM----FADRQIFIDKKLAAYIVQRMER 207 (246)
Q Consensus 152 -~~~l~D--L~SRl~~g~~~~I~~pdde~~~~il~k~----~~~r~i~l~~~v~~yl~~r~~R 207 (246)
T Consensus 315 rk~iEkD~AL~RRFq---~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~R 374 (852)
T TIGR03346 315 RKYIEKDAALERRFQ---PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred HHHHHCCHHHHHHCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCC
T ss_conf 988322688997377---120479986899999997699997627926739999999997134