HHsearch alignment for GI: 254780567 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=100.00 E-value=0 Score=371.46 Aligned_cols=213 Identities=22% Similarity=0.250 Sum_probs=186.9
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHH-HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHHHHH
Q ss_conf 41558887766884541653618999999985-101678849998787778688999999862762-----013567644
Q gi|254780567|r 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSL 100 (246)
Q Consensus 27 Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~-~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~~~~ 100 (246)
T Consensus 1 QL~l~~~l~~~~tfdnFi~~~-N~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~ 79 (226)
T TIGR03420 1 QLPLDVGLPDDPTFDNFYAGG-NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CCCCCCCCCCCCCHHCCCCCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHH
T ss_conf 988899999987631236586-7999999998764668886999899999889999999999862699579952999877
Q ss_pred H----HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 4----546666665334332100376---103354555431123421564035432002234566788521222450788
Q gi|254780567|r 101 D----SILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 (246)
Q Consensus 101 ~----~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~p 173 (246)
T Consensus 80 ~~~~~l~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL~SRl~~~~~~~I~~p 159 (226)
T TIGR03420 80 ADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPL 159 (226)
T ss_pred HHHHHHHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHHHHHHHCCCEEECCCC
T ss_conf 53999972744899999663334378378999999999998652828986788823203201779999968856852799
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9789999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 174 dde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
T Consensus 160 dd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~kevLa 226 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226 (226)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 9999999999999985998899999999986379899999999999999998089999999999849