HHsearch alignment for GI: 254780567 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.74 E-value=3.3e-08 Score=70.36 Aligned_cols=111 Identities=18% Similarity=0.274 Sum_probs=62.1
Q ss_pred HHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCHHHHHHHH-------------------HHHHHHH
Q ss_conf 99999985101-678849998787778688999999862---762013567644-------------------4546666
Q gi|254780567|r 51 QAVRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKS---RSTRFSNIAKSL-------------------DSILIDT 107 (246)
Q Consensus 51 ~A~~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~---~~~~~~~~~~~~-------------------~~~~~~~ 107 (246)
T Consensus 5 ~~~~~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAK 84 (151)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999981879980899899998865999999997121379827854777046777757605778898999999769
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 66533433210037-61033545554311-----2342156403543200223456678852
Q gi|254780567|r 108 RKPVLLEDIDLLDF-NDTQLFHIINSIHQ-----YDSSLLMTARTFPVSWGVCLPDLCSRLK 163 (246)
Q Consensus 108 ~~~i~iddi~~~~~-~ee~lf~l~n~~~~-----~~~~iilts~~~p~~~~~~l~DL~SRl~ 163 (246)
T Consensus 85 ~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~--~~~~~~~~~R~~ 144 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL--GDLDRALYDRLD 144 (151)
T ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC--CCHHHHHHCCCC
T ss_conf 986982016655999999999999871575406788899995289988--683776425598