HHsearch alignment for GI: 254780567 and conserved domain: cd01376
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=95.75 E-value=0.0076 Score=37.39 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCCCCEEECCC-HHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 6688454165361-899999-----9985101678849998787778688999
Q gi|254780567|r 36 LGISRDDLLVHSA-IEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 36 ~~~~~dnFiv~~~-N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
T Consensus 47 ~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 99 (319)
T cd01376 47 KKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTML 99 (319)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 46664867189999899998865999999868985599996789998746853