HHsearch alignment for GI: 254780567 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.06 E-value=0.022 Score=34.54 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
T Consensus 24 ~GEiv~liGpNGaGKSTLlk~l~Gl 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 7989999979997699999999778