HHsearch alignment for GI: 254780567 and conserved domain: pfam05729
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.69 E-value=0.00032 Score=45.87 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 354555431123421564035432002234566788521222450788978999999998666
Q gi|254780567|r 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 (246)
Q Consensus 126 lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~ 188 (246)
T Consensus 108 l~~ll~~~~lp~~~vliTsRp~------~~~~l~~~~~~~~~~ei~GFs~~~~~~yi~~~F~~ 164 (165)
T pfam05729 108 LSSLLRKKLLPGASLLLTSRPD------ALRDLRRGLEEPRYLEVLGFSEEDRKQYVRKYFSD 164 (165)
T ss_pred HHHHHHHCCCCCCEEEEEECCC------HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 9999841527886499996803------79885776488718998899999999999986799