HHsearch alignment for GI: 254780567 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.38 E-value=2.6e-05 Score=52.53 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=63.7
Q ss_pred HHHHHHHHHHCCCC-C-EEEEECCCCCCH--------HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 33545554311234-2-156403543200--------2234566788521222450788978999999998666289798
Q gi|254780567|r 125 QLFHIINSIHQYDS-S-LLMTARTFPVSW--------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 (246)
Q Consensus 125 ~lf~l~n~~~~~~~-~-iilts~~~p~~~--------~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~ 194 (246)
T Consensus 290 EcFsfLnralEs~laPivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRl---lII~T~py~~~ei~~Ii~iRa~~E~v~l~ 366 (395)
T pfam06068 290 ECFSFLNRALESELAPIVILATNRGICTIRGTDIISPHGIPLDLLDRL---LIITTEPYTREEIKQILEIRAQEEGVEIS 366 (395)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHE---EEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 899888776505678769998446520352567758889987777302---58856889989999999987776078779
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHH
Q ss_conf 899999994066-7989999999
Q gi|254780567|r 195 KKLAAYIVQRME-RSLVFAEKLV 216 (246)
Q Consensus 195 ~~v~~yl~~r~~-Rs~~~l~~~l 216 (246)
T Consensus 367 ~~al~~L~~ig~~~SLRYaiqLl 389 (395)
T pfam06068 367 EEALDLLAKIGEETSLRYAIQLL 389 (395)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89999999865320299999872