HHsearch alignment for GI: 254780567 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.07 E-value=0.014 Score=35.73 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCCCCCCCCCC-CCCEEECCCHHHHHHH----HHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 55888776688-4541653618999999----9851016---7884999878777868899999986276
Q gi|254780567|r 29 FFSFPRCLGIS-RDDLLVHSAIEQAVRL----IDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 29 ~l~~~~~~~~~-~dnFiv~~~N~~A~~~----i~~~~~~---~~~~l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
T Consensus 45 if~~~~i~rY~~F~dff-G--me~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~ 111 (358)
T pfam08298 45 IFSNRVIKRYPAFADFF-G--MEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL 111 (358)
T ss_pred ECCCCCCCCCCCCCCCC-C--HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 31577630255423200-1--5999999999999997236721058999778987758999999987205