HHsearch alignment for GI: 254780567 and conserved domain: pfam08298

>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.07  E-value=0.014  Score=35.73  Aligned_cols=59  Identities=22%  Similarity=0.276  Sum_probs=35.1

Q ss_pred             CCCCCCCCCCC-CCCEEECCCHHHHHHH----HHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             55888776688-4541653618999999----9851016---7884999878777868899999986276
Q gi|254780567|r   29 FFSFPRCLGIS-RDDLLVHSAIEQAVRL----IDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS   90 (246)
Q Consensus        29 ~l~~~~~~~~~-~dnFiv~~~N~~A~~~----i~~~~~~---~~~~l~i~G~~GsGKTHLl~a~~~~~~~   90 (246)
T Consensus        45 if~~~~i~rY~~F~dff-G--me~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~  111 (358)
T pfam08298        45 IFSNRVIKRYPAFADFF-G--MEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL  111 (358)
T ss_pred             ECCCCCCCCCCCCCCCC-C--HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             31577630255423200-1--5999999999999997236721058999778987758999999987205