Query         gi|254780568|ref|YP_003064981.1| hypothetical protein CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 70
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 18:45:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780568.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2jby_A M11L protein; apoptosis  49.3     8.5 0.00036   18.1   2.4   16   40-55     90-105 (145)
  2 3n22_A Protein S100-A2; EF-han  12.7      74  0.0031   13.2   1.8   21   48-68     75-95  (98)
  3 2xf7_A GP23.1; viral protein;    9.1      96   0.004   12.7   1.2   14   23-36      5-18  (51)
  4 1k8u_A S100A6, calcyclin, CACY   7.7 1.1E+02  0.0044   12.5   0.9   19   48-66     72-90  (90)
  5 3bz1_I Photosystem II reaction   6.2 1.4E+02  0.0058   11.8   2.9   22   31-52      5-26  (38)
  6 1eij_A Hypothetical protein MT   5.0 1.7E+02   0.007   11.4   1.0   19    3-21     51-69  (80)
  7 3cjl_A Domain of unknown funct   4.0 1.9E+02  0.0078   11.2   0.3   11   13-23     30-40  (88)
  8 2fh0_A Hypothetical 16.0 kDa p   3.5 2.2E+02  0.0094   10.8   1.5   20    3-22     49-68  (81)
  9 2hvu_A PDCD5-like protein; YMR   3.1 2.5E+02    0.01   10.5   1.6   20    3-22     84-103 (116)
 10 1kso_A S-100E protein, S100 ca   2.7 2.7E+02   0.011   10.3   1.0   19   49-67     75-93  (101)

No 1  
>2jby_A M11L protein; apoptosis, BCL-2 family, myxoma virus; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=49.33  E-value=8.5  Score=18.06  Aligned_cols=16  Identities=38%  Similarity=0.526  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254780568|r   40 LSVSLLALSFLSMIIT   55 (70)
Q Consensus        40 lsvsllalsflsmiit   55 (70)
                      -||-|-++|++|||+.
T Consensus        90 PSVKLAtiSLlSiIi~  105 (145)
T 2jby_A           90 PSVKLATLTLLASVIK  105 (145)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             5168999999999999


No 2  
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} PDB: 2rgi_A
Probab=12.69  E-value=74  Score=13.25  Aligned_cols=21  Identities=10%  Similarity=0.346  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999985310
Q gi|254780568|r   48 SFLSMIITVAIALVQYLRGSF   68 (70)
Q Consensus        48 sflsmiitvaialvqylrgsf   68 (70)
                      .|+.+|..+|++.-+|+.||-
T Consensus        75 EF~~li~~la~~~h~~~~~~p   95 (98)
T 3n22_A           75 EYAVFLALITVMSNDFFQGSP   95 (98)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999999985188


No 3  
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=9.15  E-value=96  Score=12.66  Aligned_cols=14  Identities=43%  Similarity=0.776  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254780568|r   23 KLYGIFLMMWICYA   36 (70)
Q Consensus        23 klygiflmmwicya   36 (70)
                      -|||.||--|.--.
T Consensus         5 llygyfldswldgt   18 (51)
T 2xf7_A            5 LLYGYFLDSWLDGT   18 (51)
T ss_dssp             TTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             78899888771462


No 4  
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, APO, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=7.70  E-value=1.1e+02  Score=12.45  Aligned_cols=19  Identities=16%  Similarity=0.455  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999853
Q gi|254780568|r   48 SFLSMIITVAIALVQYLRG   66 (70)
Q Consensus        48 sflsmiitvaialvqylrg   66 (70)
                      .|+.++..+|++.-.+++|
T Consensus        72 EF~~li~~la~~c~e~~~g   90 (90)
T 1k8u_A           72 EYVTFLGALALIYNEALKG   90 (90)
T ss_dssp             HHHHHHHHHHHHHCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999988478


No 5  
>3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3kzi_I* 3a0b_I* 3a0h_I*
Probab=6.24  E-value=1.4e+02  Score=11.83  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254780568|r   31 MWICYAAIILSVSLLALSFLSM   52 (70)
Q Consensus        31 mwicyaaiilsvsllalsflsm   52 (70)
                      -+..|...+.-|||....|||-
T Consensus         5 Ki~Vy~vV~fFv~lFiFGFLSn   26 (38)
T 3bz1_I            5 KITVYIVVTFFVLLFVFGFLSG   26 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEHHHHHHHHHHHHHHHHCCC
T ss_conf             8642678999999998853058


No 6  
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=5.02  E-value=1.7e+02  Score=11.42  Aligned_cols=19  Identities=26%  Similarity=0.403  Sum_probs=13.7

Q ss_pred             EEEHHHHHHHHHHHHHHHH
Q ss_conf             1100388889999999999
Q gi|254780568|r    3 QIYSPISERFLFVILERMR   21 (70)
Q Consensus         3 qiyspiserflfvilermr   21 (70)
                      |+-.|+||.-|--||+.+-
T Consensus        51 ~i~~kisd~~L~~iL~~is   69 (80)
T 1eij_A           51 RVRSKITDEQLKELLKRVA   69 (80)
T ss_dssp             SSCCCCCHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHC
T ss_conf             9999729999999999875


No 7  
>3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=4.02  E-value=1.9e+02  Score=11.17  Aligned_cols=11  Identities=45%  Similarity=0.782  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780568|r   13 LFVILERMRKK   23 (70)
Q Consensus        13 lfvilermrkk   23 (70)
                      +|-|+||+|.|
T Consensus        30 if~Ive~v~~k   40 (88)
T 3cjl_A           30 LFKLLEKVDGK   40 (88)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999723


No 8  
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=3.52  E-value=2.2e+02  Score=10.77  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=12.3

Q ss_pred             EEEHHHHHHHHHHHHHHHHH
Q ss_conf             11003888899999999999
Q gi|254780568|r    3 QIYSPISERFLFVILERMRK   22 (70)
Q Consensus         3 qiyspiserflfvilermrk   22 (70)
                      |+-.|++|.-|--||+++-+
T Consensus        49 ql~~kisd~~L~~iL~~vs~   68 (81)
T 2fh0_A           49 NVTHKITEAEIVSILNGIAK   68 (81)
T ss_dssp             CCSCCBCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHH
T ss_conf             98987299999999999814


No 9  
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=3.09  E-value=2.5e+02  Score=10.53  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=11.7

Q ss_pred             EEEHHHHHHHHHHHHHHHHH
Q ss_conf             11003888899999999999
Q gi|254780568|r    3 QIYSPISERFLFVILERMRK   22 (70)
Q Consensus         3 qiyspiserflfvilermrk   22 (70)
                      ||-.||||.-|--||+.+-+
T Consensus        84 qi~~kisd~~L~~iL~~vs~  103 (116)
T 2hvu_A           84 NVTHKITEAEIVSILNGIAK  103 (116)
T ss_dssp             CCSSCBCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHH
T ss_conf             99987289999999999715


No 10 
>1kso_A S-100E protein, S100 calcium-binding protein A3; S100,EF-hand,Ca2+ binding protein,Zn2+ binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.2
Probab=2.75  E-value=2.7e+02  Score=10.32  Aligned_cols=19  Identities=5%  Similarity=0.363  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999998531
Q gi|254780568|r   49 FLSMIITVAIALVQYLRGS   67 (70)
Q Consensus        49 flsmiitvaialvqylrgs   67 (70)
                      |+.++..+|++.-+|.+++
T Consensus        75 F~~l~~~la~~~~~~~~~~   93 (101)
T 1kso_A           75 YVRSLACLCLYCHEYFKDC   93 (101)
T ss_dssp             HHHHHHHHHHHHCGGGTTC
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999728


Done!