Query gi|254780568|ref|YP_003064981.1| hypothetical protein CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 70
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 09:06:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780568.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 8.5 61 0.0045 12.4 2.9 21 31-51 5-25 (35)
2 d1k8ua_ a.39.1.2 (A:) Calcycli 5.7 82 0.006 11.8 0.7 19 48-66 71-89 (89)
3 d1e12a_ f.13.1.1 (A:) Halorhod 5.4 90 0.0066 11.6 3.9 14 23-36 175-188 (239)
4 d1nu9c1 a.8.6.1 (C:1-145) Stap 4.3 1.1E+02 0.008 11.1 2.4 23 6-28 20-42 (145)
5 d1eija_ a.5.6.1 (A:) Hypotheti 4.2 1.1E+02 0.0081 11.1 1.0 18 3-20 51-68 (72)
6 d1j2oa1 g.39.1.3 (A:1-30) Rhom 4.1 24 0.0018 14.5 -2.9 13 6-18 11-23 (30)
7 d1ksoa_ a.39.1.2 (A:) Calcycli 3.5 1.3E+02 0.0094 10.8 1.0 20 48-67 73-92 (93)
8 d1nvma1 a.5.7.1 (A:291-341) 4- 3.4 1.3E+02 0.0096 10.7 2.1 12 51-62 37-48 (51)
9 d1xvxa_ c.94.1.1 (A:) Ferric-b 3.2 1.4E+02 0.01 10.6 0.8 23 4-27 8-30 (311)
10 d2crua1 a.5.6.1 (A:8-112) Prog 3.0 1.5E+02 0.011 10.5 1.1 18 3-20 74-91 (105)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.48 E-value=61 Score=12.43 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254780568|r 31 MWICYAAIILSVSLLALSFLS 51 (70)
Q Consensus 31 mwicyaaiilsvsllalsfls 51 (70)
-+..|..++.-|||....|||
T Consensus 5 Ki~Vy~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEHHHHHHHHHHHHHHHHCC
T ss_conf 874166899999999986305
No 2
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=5.72 E-value=82 Score=11.77 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999853
Q gi|254780568|r 48 SFLSMIITVAIALVQYLRG 66 (70)
Q Consensus 48 sflsmiitvaialvqylrg 66 (70)
.|+.|+-.++++--.+++|
T Consensus 71 EF~~l~~~la~~c~~~~~~ 89 (89)
T d1k8ua_ 71 EYVTFLGALALIYNEALKG 89 (89)
T ss_dssp HHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999988469
No 3
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=5.42 E-value=90 Score=11.56 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780568|r 23 KLYGIFLMMWICYA 36 (70)
Q Consensus 23 klygiflmmwicya 36 (70)
.+..+.+.-|.+|.
T Consensus 175 ~l~~~~~v~W~iYP 188 (239)
T d1e12a_ 175 TLRVLTVVLWLGYP 188 (239)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999899998
No 4
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=4.29 E-value=1.1e+02 Score=11.13 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03888899999999999999999
Q gi|254780568|r 6 SPISERFLFVILERMRKKLYGIF 28 (70)
Q Consensus 6 spiserflfvilermrkklygif 28 (70)
+|||.+++.-++++.....+.++
T Consensus 20 ~~is~~Y~~~~i~~Le~qf~~a~ 42 (145)
T d1nu9c1 20 TLISDWYLKGRLTSLESQFINAL 42 (145)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 81317899999999999999999
No 5
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.22 E-value=1.1e+02 Score=11.10 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=10.6
Q ss_pred EEEHHHHHHHHHHHHHHH
Q ss_conf 110038888999999999
Q gi|254780568|r 3 QIYSPISERFLFVILERM 20 (70)
Q Consensus 3 qiyspiserflfvilerm 20 (70)
|+-.|+||.-|--||+++
T Consensus 51 ~i~~kisd~~L~~iL~~i 68 (72)
T d1eija_ 51 RVRSKITDEQLKELLKRV 68 (72)
T ss_dssp SSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 999983999999999986
No 6
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.10 E-value=24 Score=14.52 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0388889999999
Q gi|254780568|r 6 SPISERFLFVILE 18 (70)
Q Consensus 6 spiserflfvile 18 (70)
.||++||+.-.++
T Consensus 11 ~~I~DRflL~a~D 23 (30)
T d1j2oa1 11 QNIGDRYFLKAID 23 (30)
T ss_dssp SCBCSSEEEECSS
T ss_pred CCCHHHHHHHHHH
T ss_conf 8214899999888
No 7
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=3.50 E-value=1.3e+02 Score=10.76 Aligned_cols=20 Identities=5% Similarity=0.348 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998531
Q gi|254780568|r 48 SFLSMIITVAIALVQYLRGS 67 (70)
Q Consensus 48 sflsmiitvaialvqylrgs 67 (70)
.|+.|+-.++++..+|+.++
T Consensus 73 EF~~l~~~l~~~~h~~~~~~ 92 (93)
T d1ksoa_ 73 EYVRSLACLCLYCHEYFKDC 92 (93)
T ss_dssp HHHHHHHHHHHHHCGGGTTC
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999997429
No 8
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=3.43 E-value=1.3e+02 Score=10.72 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780568|r 51 SMIITVAIALVQ 62 (70)
Q Consensus 51 smiitvaialvq 62 (70)
.||+.||+.|..
T Consensus 37 DmIiDvA~~l~~ 48 (51)
T d1nvma1 37 DMIVDVALDLLA 48 (51)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999988
No 9
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}
Probab=3.17 E-value=1.4e+02 Score=10.58 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=0.0
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 100388889999999999999999
Q gi|254780568|r 4 IYSPISERFLFVILERMRKKLYGI 27 (70)
Q Consensus 4 iyspiserflfvilermrkklygi 27 (70)
+||+-+|...=-+++...|+ +||
T Consensus 8 vYs~~~~~~~~~ii~~Fek~-tGI 30 (311)
T d1xvxa_ 8 VYNAQHENLVKSWVDGFTKD-TGI 30 (311)
T ss_dssp EEECSCHHHHHHHHHHHHHH-HCC
T ss_pred EEECCCHHHHHHHHHHHHHH-HCC
T ss_conf 99798877999999999886-698
No 10
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.02 E-value=1.5e+02 Score=10.49 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=0.0
Q ss_pred EEEHHHHHHHHHHHHHHH
Q ss_conf 110038888999999999
Q gi|254780568|r 3 QIYSPISERFLFVILERM 20 (70)
Q Consensus 3 qiyspiserflfvilerm 20 (70)
+|-.||+|.-|--||+.+
T Consensus 74 ~i~~kisd~~Lk~iL~~i 91 (105)
T d2crua1 74 QLSEKVSEQGLIEILKKV 91 (105)
T ss_dssp CCCSCBCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 999983999999999997
Done!