HHsearch alignment for GI: 254780569 and conserved domain: PRK05731
>PRK05731 thiamine monophosphate kinase; Provisional.
Probab=100.00 E-value=1.3e-32 Score=248.65 Aligned_cols=294 Identities=22% Similarity=0.274 Sum_probs=214.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCC--CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999886267354366777315756554468871899956888--7899999982885501688888543467885411
Q gi|254780569|r 27 QIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGV--GTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAE 104 (357)
Q Consensus 27 ~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGV--GTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~ 104 (357)
T Consensus 8 lI~~~~~~~~~~~~~~giGDDaAvi~~~~~----~~lv~ttD~~ve~~H--F~~~~~~p~~iG~~av~~n~SDiaamGa~ 81 (320)
T PRK05731 8 LIARLFARRQRADVELGIGDDAALLDPPPG----QRLVVSTDTLVEGVH--FRPDWSSPEDLGYKALAVNLSDLAAMGAR 81 (320)
T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEECCC----CEEEEEECCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999997316798864689877799970899----879999556565767--78788999999999999878889971897
Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 22110000033-20378999999999999986095221430100000136556633689999741542113334555248
Q gi|254780569|r 105 PLFFLDYLATS-QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDL 183 (357)
Q Consensus 105 Pl~fldyia~~-~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~ 183 (357)
T Consensus 82 P~~~~~sl~lP~~~~~~~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~------~~~i~vt~iG~~~~~~~l~r~ga~~GD~ 155 (320)
T PRK05731 82 PAAFLLALALPKDVDEAWLEALADGLFALADRYGAELIGGDTTRGP------DLSISVTAIGEVPGGRALRRSGAKPGDL 155 (320)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC------CCEEEEEEEEECCCCCEEECCCCCCCCE
T ss_conf 2278885026886439999999999999999839569604312588------7179999996117996562367898987
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC
Q ss_conf 99953865543232034444553115545667666663066875397201226888876304632222345420122012
Q gi|254780569|r 184 ILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI 263 (357)
Q Consensus 184 IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL 263 (357)
T Consensus 156 I~vTG~lG~s~~gl~~l~~-----~~~~~~---~~~~~~~~~~~~~p~~~~-~~~~~-l~~--~~~a~~DiSd-GL~~~L 222 (320)
T PRK05731 156 VAVTGTLGDSAAGLALLLN-----GGQASA---NEDAAALISRHLRPQPRV-GLGQA-LRG--LASAAMDISD-GLAADL 222 (320)
T ss_pred EEECCCCCHHHHHHHHHHC-----CCCCCC---CHHHHHHHHHHHCCCCCH-HHHHH-HHH--HHHHHCCCCH-HHHHHH
T ss_conf 8972774277889999847-----877784---055799999962898438-99999-776--5555320416-799999
Q ss_pred CCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCC---CCEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 0025-4430478710048986799999996698988987652467---11699986898999999999779980899999
Q gi|254780569|r 264 PRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG---IGMVIIVHPDNKDCIIKKFQENNENIILIGEV 339 (357)
Q Consensus 264 ~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmG---iGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V 339 (357)
T Consensus 223 ~eia~~Sgvg~~I~~~~iP~~~~~~~~~----~~~~~~~---l~gGedyeLl~tv~~~~~~~~~~~~~~~gi~~~~IG~v 295 (320)
T PRK05731 223 GHIAEASGVGADIDADALPVSAALAALG----EDALRWA---LSGGEDYELLFTVPPENRGALLAAAKKLGVGVTIIGRV 295 (320)
T ss_pred HHHHHHCCCCEEEEHHHCCCCHHHHHHH----HHHHHHH---HCCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999986993998588789875665535----5499983---16787336999988999999999999759896999999
Q ss_pred EECCCCCCEEEEEEE
Q ss_conf 977887200899631
Q gi|254780569|r 340 TQRSEKSPPILYQGS 354 (357)
Q Consensus 340 ~~~~~~~~~V~~~G~ 354 (357)
T Consensus 296 ~~~~g--v~l~~~g~ 308 (320)
T PRK05731 296 AGGEG--VLLDRDGK 308 (320)
T ss_pred ECCCC--EEEEECCC
T ss_conf 84884--79993998