HHsearch alignment for GI: 254780569 and conserved domain: cd00396

>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00  E-value=1.3e-42  Score=318.74  Aligned_cols=219  Identities=29%  Similarity=0.508  Sum_probs=196.8

Q ss_pred             EEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf             999568887899999982885501688888543467885411221100000332-0378999999999999986095221
Q gi|254780569|r   63 LVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALI  141 (357)
Q Consensus        63 Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~-l~~~~~~~ii~gi~~~c~~~g~~li  141 (357)
T Consensus         2 l~~~tDg~~~~~~~-----dP~~~G~~av~~~~sDi~a~Ga~P~~~l~~l~~~~~~~~~~l~~i~~Gi~~~~~~~gv~iv   76 (222)
T cd00396           2 LAMSTDGINPPLAI-----NPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDILEDVVDGVAEACNQLGVPIV   76 (222)
T ss_pred             EEEEECCCCCCCCC-----CHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             59996688994001-----8888999999999888987599859999988834899878999999999999999698268


Q ss_pred             CCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             43010000013655663368999974154211333455524899953865543232034444553115545667666663
Q gi|254780569|r  142 GGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEH  221 (357)
Q Consensus       142 GGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~  221 (357)
T Consensus        77 GG~t~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~a~~GD~ii~~g--------~------------------------  123 (222)
T cd00396          77 GGHTSVSPGTMG-HKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG--------V------------------------  123 (222)
T ss_pred             EEEEEECCCCCC-CCEEEEEEEEEEECCCCEECCCCCCCCCEEEEEC--------H------------------------
T ss_conf             135897588875-4617999999875565400656799999999989--------4------------------------


Q ss_pred             CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf             06687539720122688887630463222234542012201200254-43047871004898679999999669898898
Q gi|254780569|r  222 SLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIP-AHLTASINLNSVEVPQIISWLSKKAHVKPAEV  300 (357)
Q Consensus       222 tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM  300 (357)
T Consensus       124 --------------~~~~~l~~~-~~v~a~~DiT~GGL~~~l~e~a~~s~~g~~i~~~~ip~~~~~~~~~~~----~~~~  184 (222)
T cd00396         124 --------------DAVLELVAA-GDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVE----HIEE  184 (222)
T ss_pred             --------------HHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHH----CHHH
T ss_conf             --------------999987645-885699867987499999999987697699977657988789988550----3599


Q ss_pred             HHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             76524671169998689899999999977998089999
Q gi|254780569|r  301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGE  338 (357)
Q Consensus       301 ~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~  338 (357)
T Consensus       185 ~~~~~~~g~lli~v~~e~~~~v~~~l~~~gi~a~vIGr  222 (222)
T cd00396         185 ALLFNSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR  222 (222)
T ss_pred             HHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             97522548699999789999999999966999797192