Query gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 357
No_of_seqs 210 out of 2206
Neff 5.8
Searched_HMMs 39220
Date Sun May 29 22:10:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780569.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00878 purM phosphoribosylf 100.0 0 0 1029.4 23.1 333 9-342 1-338 (338)
2 PRK05385 phosphoribosylaminoim 100.0 0 0 923.7 29.9 334 8-344 2-335 (338)
3 COG0150 PurM Phosphoribosylami 100.0 0 0 912.1 30.8 342 7-350 2-343 (345)
4 KOG0237 consensus 100.0 0 0 884.8 23.7 350 3-353 431-781 (788)
5 cd02196 PurM PurM (Aminoimidaz 100.0 0 0 820.5 25.2 297 42-340 1-297 (297)
6 cd00396 PurM-like AIR (aminoim 100.0 1.3E-42 0 318.7 16.7 219 63-338 2-222 (222)
7 cd06061 PurM-like1 AIR synthas 100.0 1.1E-39 2.7E-44 298.4 21.9 275 35-339 20-298 (298)
8 cd02197 HypE HypE (Hydrogenase 100.0 3E-39 7.6E-44 295.3 20.5 285 23-339 5-293 (293)
9 TIGR03267 methan_mark_2 putati 100.0 8.9E-38 2.3E-42 284.9 20.2 286 13-343 12-299 (323)
10 TIGR02124 hypE hydrogenase exp 100.0 3E-35 7.5E-40 267.2 20.7 288 22-354 11-326 (345)
11 PRK05731 thiamine monophosphat 100.0 1.3E-32 3.4E-37 248.6 19.4 294 27-354 8-308 (320)
12 PRK00943 selenophosphate synth 100.0 7.5E-32 1.9E-36 243.4 21.3 294 25-352 27-347 (347)
13 cd02192 PurM-like3 AIR synthas 100.0 3.3E-32 8.5E-37 245.9 18.3 257 35-338 25-283 (283)
14 cd02195 SelD Selenophosphate s 100.0 9.8E-31 2.5E-35 235.6 16.9 262 24-339 19-287 (287)
15 COG0309 HypE Hydrogenase matur 100.0 6.1E-30 1.6E-34 230.0 15.9 293 26-345 16-314 (339)
16 cd02194 ThiL ThiL (Thiamine-mo 100.0 6.1E-29 1.6E-33 223.0 17.8 285 22-340 3-291 (291)
17 cd02691 PurM-like2 AIR synthas 100.0 6.7E-29 1.7E-33 222.7 16.4 297 22-353 14-315 (346)
18 TIGR01736 FGAM_synth_II phosph 100.0 4.9E-29 1.2E-33 223.7 6.7 277 36-356 55-360 (763)
19 TIGR01379 thiL thiamine-monoph 100.0 2.4E-26 6E-31 204.9 18.5 307 27-354 5-323 (336)
20 COG2144 Selenophosphate synthe 99.9 1E-26 2.7E-31 207.4 12.6 260 35-343 33-295 (324)
21 COG0611 ThiL Thiamine monophos 99.9 4.7E-24 1.2E-28 188.8 20.1 292 28-355 9-305 (317)
22 pfam02769 AIRS_C AIR synthase 99.9 7.8E-23 2E-27 180.3 8.9 144 179-345 1-145 (150)
23 COG0046 PurL Phosphoribosylfor 99.9 1.2E-21 3E-26 172.0 10.2 281 36-356 74-371 (743)
24 cd02203 PurL_repeat1 PurL subu 99.9 4.2E-21 1.1E-25 168.1 11.3 241 92-356 52-310 (313)
25 PRK01213 phosphoribosylformylg 99.8 2.2E-18 5.6E-23 149.1 12.1 277 36-356 63-359 (736)
26 COG0709 SelD Selenophosphate s 99.7 3.3E-16 8.5E-21 133.8 7.8 264 43-345 47-341 (346)
27 cd02193 PurL Formylglycinamide 99.7 5.2E-15 1.3E-19 125.4 13.6 222 87-338 22-271 (272)
28 TIGR01736 FGAM_synth_II phosph 99.7 7.7E-15 2E-19 124.3 14.3 262 46-343 448-730 (763)
29 TIGR00476 selD selenide, water 99.6 4.3E-16 1.1E-20 133.0 7.5 280 46-343 58-357 (372)
30 COG1973 HypE Hydrogenase matur 99.6 5.9E-14 1.5E-18 118.1 16.7 306 9-355 67-393 (449)
31 cd02204 PurL_repeat2 PurL subu 99.6 2.6E-14 6.7E-19 120.5 12.1 250 48-339 2-264 (264)
32 PRK01213 phosphoribosylformylg 99.6 3.7E-13 9.5E-18 112.4 15.4 259 44-342 436-706 (736)
33 pfam00586 AIRS AIR synthase re 99.5 1.4E-14 3.7E-19 122.3 5.1 94 45-145 1-95 (95)
34 PRK05297 phosphoribosylformylg 99.2 5.6E-11 1.4E-15 97.2 8.1 231 91-343 311-583 (1294)
35 COG0046 PurL Phosphoribosylfor 99.2 1.3E-09 3.3E-14 87.6 14.6 259 46-342 448-718 (743)
36 KOG3939 consensus 99.0 2.1E-08 5.3E-13 79.2 14.1 269 59-352 11-302 (312)
37 PRK05297 phosphoribosylformylg 98.7 5.2E-06 1.3E-10 62.4 17.6 237 90-356 714-972 (1294)
38 TIGR01739 tegu_FGAM_synt herpe 98.2 0.00023 5.8E-09 50.9 14.4 226 95-356 712-958 (1313)
39 KOG1907 consensus 97.8 0.0028 7.2E-08 43.2 14.8 208 120-356 769-994 (1320)
40 TIGR01857 FGAM-synthase phosph 97.8 6.1E-05 1.6E-09 54.9 6.2 195 115-356 386-605 (1279)
41 TIGR01735 FGAM_synt phosphorib 97.4 0.017 4.3E-07 37.8 14.9 269 78-357 720-1062(1401)
42 TIGR01735 FGAM_synt phosphorib 96.8 0.002 5.2E-08 44.2 4.8 216 96-342 334-601 (1401)
43 KOG1907 consensus 94.2 0.29 7.5E-06 29.1 7.3 264 59-355 314-609 (1320)
44 TIGR01857 FGAM-synthase phosph 91.8 0.8 2E-05 26.0 6.6 273 9-343 634-941 (1279)
45 PRK13234 nifH nitrogenase redu 88.6 0.71 1.8E-05 26.4 4.1 157 44-205 79-250 (293)
46 pfam12389 Peptidase_M73 Camely 86.0 0.46 1.2E-05 27.7 1.9 57 123-185 7-68 (199)
47 PRK13233 nifH nitrogenase redu 82.4 2.4 6.2E-05 22.7 4.3 153 45-207 78-251 (275)
48 PRK13236 nitrogenase reductase 78.6 1.6 4.2E-05 23.9 2.4 127 45-178 82-225 (295)
49 cd01968 Nitrogenase_NifE_I Nit 76.8 6.1 0.00015 19.9 4.9 26 307-332 287-312 (410)
50 cd04914 ACT_AKi-DapG-BS_1 ACT 74.7 4.1 0.0001 21.1 3.6 53 280-336 14-66 (67)
51 TIGR00904 mreB cell shape dete 73.4 1.5 3.7E-05 24.2 1.0 56 219-275 248-311 (337)
52 PRK13231 nitrogenase reductase 73.0 1.4 3.7E-05 24.2 0.9 156 45-207 73-242 (264)
53 PRK00854 rocD ornithine--oxo-a 70.9 5.1 0.00013 20.4 3.3 32 123-156 210-241 (404)
54 TIGR01990 bPGM beta-phosphoglu 63.8 11 0.00028 18.1 3.8 93 223-334 83-187 (190)
55 TIGR02495 NrdG2 anaerobic ribo 61.9 10 0.00026 18.3 3.4 73 223-297 38-119 (220)
56 KOG0479 consensus 61.9 9.2 0.00024 18.6 3.2 59 146-209 200-263 (818)
57 PRK12436 UDP-N-acetylenolpyruv 61.5 13 0.00032 17.6 4.2 16 179-194 167-182 (305)
58 TIGR02630 xylose_isom_A xylose 61.2 7.4 0.00019 19.3 2.6 85 230-331 310-415 (437)
59 PRK12377 putative replication 59.0 8.3 0.00021 18.9 2.5 10 320-329 216-225 (248)
60 COG1348 NifH Nitrogenase subun 58.9 4.3 0.00011 21.0 1.0 127 44-176 76-219 (278)
61 TIGR01661 ELAV_HUD_SF ELAV/HuD 58.8 6.4 0.00016 19.7 1.9 21 307-327 150-170 (436)
62 TIGR01464 hemE uroporphyrinoge 58.1 3.3 8.4E-05 21.7 0.4 26 302-327 325-350 (351)
63 pfam04558 tRNA_synt_1c_R1 Glut 58.0 14 0.00037 17.2 4.6 43 282-328 87-132 (164)
64 CHL00072 chlL photochlorophyll 56.2 6.6 0.00017 19.6 1.6 155 45-207 76-247 (271)
65 PRK03072 heat shock protein Ht 56.1 14 0.00036 17.3 3.3 46 118-171 65-110 (289)
66 TIGR02477 PFKA_PPi diphosphate 54.4 16 0.00042 16.8 4.5 60 112-176 144-210 (566)
67 TIGR02087 LEUD_arch 3-isopropy 54.3 5.4 0.00014 20.3 0.9 41 147-190 15-63 (159)
68 cd02071 MM_CoA_mut_B12_BD meth 54.1 17 0.00042 16.8 3.7 31 183-213 2-32 (122)
69 KOG0125 consensus 53.1 17 0.00042 16.8 3.3 55 283-343 111-169 (376)
70 PRK12399 tagatose 1,6-diphosph 51.7 11 0.00028 18.1 2.2 52 90-141 106-159 (324)
71 cd01122 GP4d_helicase GP4d_hel 51.5 18 0.00047 16.5 4.6 20 122-141 166-185 (271)
72 pfam00162 PGK Phosphoglycerate 51.1 8.1 0.00021 19.0 1.4 12 22-33 34-45 (383)
73 PRK05588 histidinol-phosphatas 51.1 18 0.00047 16.5 5.2 93 233-342 125-250 (256)
74 TIGR02049 gshA_ferroox glutama 49.2 9.4 0.00024 18.6 1.5 183 44-290 23-227 (436)
75 cd00318 Phosphoglycerate_kinas 48.7 6 0.00015 19.9 0.4 72 59-141 188-263 (397)
76 TIGR03275 methan_mark_8 putati 48.3 20 0.00052 16.2 5.9 66 278-343 123-200 (259)
77 TIGR02315 ABC_phnC phosphonate 47.8 21 0.00053 16.2 3.1 24 177-203 24-48 (253)
78 pfam11633 Nsp3 Replicase polyp 46.1 22 0.00056 16.0 3.7 63 280-344 43-107 (142)
79 PRK02391 heat shock protein Ht 45.8 21 0.00052 16.2 2.8 46 118-171 72-117 (297)
80 PRK06105 aminotransferase; Pro 45.7 22 0.00057 15.9 5.4 33 123-157 238-270 (460)
81 TIGR00441 gmhA phosphoheptose 45.0 12 0.0003 17.9 1.5 14 179-192 106-119 (186)
82 TIGR02493 PFLA pyruvate format 44.4 23 0.00059 15.8 3.9 46 224-271 75-127 (243)
83 PRK04073 rocD ornithine--oxo-a 43.3 24 0.00062 15.7 5.0 52 96-155 185-236 (396)
84 PRK11623 pcnB poly(A) polymera 42.9 24 0.00061 15.7 2.8 34 90-127 71-104 (471)
85 TIGR02329 propionate_PrpR prop 42.8 24 0.00062 15.6 2.8 31 303-333 118-148 (658)
86 pfam06277 EutA Ethanolamine ut 42.6 14 0.00035 17.4 1.5 69 273-342 375-446 (473)
87 cd02032 Bchl_like This family 42.4 20 0.00052 16.2 2.4 157 45-206 76-246 (267)
88 pfam10126 Nit_Regul_Hom Unchar 42.3 17 0.00042 16.8 1.9 17 313-329 73-89 (110)
89 COG1831 Predicted metal-depend 41.8 25 0.00063 15.6 2.7 32 272-305 242-273 (285)
90 PRK10719 eutA reactivating fac 41.3 15 0.00038 17.1 1.5 64 279-342 377-443 (471)
91 PRK04897 heat shock protein Ht 41.3 26 0.00066 15.5 3.2 42 122-171 79-120 (298)
92 PRK06943 adenosylmethionine--8 41.2 26 0.00066 15.5 3.8 32 123-156 241-272 (452)
93 PRK13185 chlL protochlorophyll 40.5 24 0.00062 15.7 2.5 153 45-207 78-248 (269)
94 cd02072 Glm_B12_BD B12 binding 40.0 27 0.00069 15.3 3.6 31 183-213 2-32 (128)
95 PRK00073 pgk phosphoglycerate 39.0 13 0.00033 17.5 0.9 21 121-141 240-260 (391)
96 PRK13232 nifH nitrogenase redu 38.9 18 0.00045 16.6 1.6 88 45-138 76-174 (273)
97 TIGR01622 SF-CC1 splicing fact 38.8 28 0.00072 15.2 3.0 21 307-327 278-298 (531)
98 smart00362 RRM_2 RNA recogniti 38.5 28 0.00072 15.2 3.1 47 283-329 14-62 (72)
99 TIGR00500 met_pdase_I methioni 37.9 5.1 0.00013 20.4 -1.3 75 117-195 34-115 (265)
100 COG0279 GmhA Phosphoheptose is 37.7 19 0.00048 16.4 1.6 15 177-191 106-120 (176)
101 TIGR02317 prpB methylisocitrat 37.7 29 0.00074 15.1 3.1 171 77-283 45-233 (287)
102 PRK12858 tagatose 1,6-diphosph 37.6 28 0.0007 15.3 2.4 52 90-141 109-162 (340)
103 KOG0145 consensus 37.1 27 0.00069 15.3 2.3 110 220-329 215-343 (360)
104 PRK09355 hydroxyethylthiazole 36.4 31 0.00078 15.0 4.1 51 90-141 24-88 (262)
105 PTZ00126 tyrosyl-tRNA syntheta 36.3 31 0.00078 15.0 3.7 76 86-161 97-185 (399)
106 PRK03001 heat shock protein Ht 36.1 31 0.00079 14.9 2.5 45 118-170 62-106 (284)
107 KOG0214 consensus 35.5 32 0.0008 14.9 5.5 87 258-352 491-586 (1141)
108 PRK03982 heat shock protein Ht 35.2 32 0.00081 14.8 2.6 45 118-170 63-107 (288)
109 COG2944 Predicted transcriptio 34.4 33 0.00083 14.8 2.4 50 283-332 46-101 (104)
110 TIGR01270 Trp_5_monoox tryptop 33.0 24 0.00062 15.7 1.5 117 170-306 157-299 (499)
111 pfam11084 DUF2621 Protein of u 32.9 35 0.00088 14.6 3.5 47 281-333 73-134 (141)
112 pfam03686 UPF0146 Uncharacteri 32.8 13 0.00032 17.6 0.1 74 69-146 21-108 (127)
113 PRK13938 phosphoheptose isomer 32.7 25 0.00064 15.6 1.6 19 177-195 110-128 (196)
114 PRK08133 O-succinylhomoserine 31.9 25 0.00064 15.5 1.5 111 60-187 101-219 (391)
115 cd01170 THZ_kinase 4-methyl-5- 31.0 37 0.00094 14.4 4.1 51 90-141 19-83 (242)
116 cd01971 Nitrogenase_VnfN_like 30.7 37 0.00095 14.3 3.4 24 84-109 99-122 (427)
117 pfam00076 RRM_1 RNA recognitio 30.5 37 0.00095 14.4 2.1 47 283-329 13-62 (70)
118 COG4819 EutA Ethanolamine util 30.5 14 0.00037 17.2 0.0 41 301-342 401-445 (473)
119 PRK11153 metN DL-methionine tr 30.4 38 0.00096 14.3 5.6 32 308-339 309-343 (343)
120 PRK04148 hypothetical protein; 30.0 21 0.00054 16.1 0.8 74 69-145 24-114 (135)
121 pfam02153 PDH Prephenate dehyd 29.5 9.5 0.00024 18.5 -1.0 87 183-270 125-211 (258)
122 COG1809 (2R)-phospho-3-sulfola 29.4 39 0.001 14.2 3.8 38 255-294 179-226 (258)
123 COG2117 Predicted subunit of t 29.3 35 0.00089 14.6 1.8 47 56-103 23-80 (198)
124 PRK13962 bifunctional phosphog 29.2 8.6 0.00022 18.8 -1.3 170 59-258 187-377 (653)
125 smart00360 RRM RNA recognition 29.2 27 0.00069 15.3 1.2 45 283-327 11-59 (71)
126 TIGR02909 spore_YkwD uncharact 28.6 18 0.00047 16.5 0.3 37 7-43 64-104 (129)
127 TIGR02093 P_ylase glycogen/sta 28.5 41 0.001 14.1 3.3 45 255-305 302-355 (822)
128 KOG0020 consensus 28.1 41 0.0011 14.0 2.7 85 251-339 642-756 (785)
129 COG3541 Predicted nucleotidylt 28.0 41 0.0011 14.0 3.3 129 154-299 27-164 (248)
130 PRK13937 phosphoheptose isomer 27.9 35 0.0009 14.5 1.6 18 177-194 107-124 (192)
131 TIGR03600 phage_DnaB phage rep 27.9 42 0.0011 14.0 3.0 43 159-203 174-218 (421)
132 cd00984 DnaB_C DnaB helicase C 27.7 42 0.0011 14.0 4.7 12 62-73 16-27 (242)
133 KOG3580 consensus 27.7 39 0.001 14.2 1.9 31 158-189 428-458 (1027)
134 pfam07393 Sec10 Exocyst comple 27.7 40 0.001 14.1 1.9 37 278-330 639-678 (703)
135 cd05006 SIS_GmhA Phosphoheptos 27.4 35 0.00089 14.6 1.6 17 177-193 98-114 (177)
136 TIGR02476 BluB cob(II)yrinic a 27.4 37 0.00093 14.4 1.6 45 300-344 141-186 (206)
137 COG1448 TyrB Aspartate/tyrosin 26.9 43 0.0011 13.9 4.7 24 305-328 252-277 (396)
138 TIGR01035 hemA glutamyl-tRNA r 26.5 44 0.0011 13.9 3.4 17 220-236 222-238 (436)
139 cd07886 RHD-n_RelB N-terminal 26.1 26 0.00066 15.5 0.7 42 295-339 88-131 (172)
140 PRK05973 replicative DNA helic 26.0 38 0.00098 14.3 1.6 12 60-71 65-76 (237)
141 TIGR02777 LigD_PE_dom DNA liga 26.0 42 0.0011 14.0 1.7 50 150-202 87-144 (163)
142 pfam00554 RHD Rel homology dom 25.8 28 0.00071 15.2 0.8 40 295-337 84-124 (169)
143 PRK10886 DnaA initiator-associ 25.7 39 0.001 14.2 1.6 16 177-192 106-121 (196)
144 cd00616 AHBA_syn 3-amino-5-hyd 25.5 46 0.0012 13.7 3.7 50 92-142 69-138 (352)
145 cd07933 RHD-n_c-Rel N-terminal 25.4 18 0.00047 16.5 -0.2 40 295-337 86-126 (172)
146 PRK00115 hemE uroporphyrinogen 25.4 32 0.00082 14.8 1.1 27 303-329 319-345 (347)
147 KOG3339 consensus 25.3 22 0.00055 16.0 0.2 10 142-151 48-57 (211)
148 pfam12120 RNApol_Rpb2_rif DNA/ 25.1 47 0.0012 13.7 2.8 77 176-269 8-87 (100)
149 PRK06749 replicative DNA helic 25.0 47 0.0012 13.7 1.9 46 158-205 165-212 (428)
150 COG1979 Uncharacterized oxidor 24.8 47 0.0012 13.6 2.1 91 112-212 60-161 (384)
151 TIGR02620 cas_VVA1548 putative 24.4 36 0.00091 14.5 1.1 28 172-206 26-53 (93)
152 PRK07571 bidirectional hydroge 24.4 27 0.00069 15.3 0.5 54 279-332 50-118 (169)
153 TIGR01893 aa-his-dipept aminoa 24.2 48 0.0012 13.6 4.7 41 238-280 236-278 (506)
154 PRK11658 UDP-4-amino-4-deoxy-L 24.0 49 0.0012 13.5 3.3 51 92-143 84-154 (379)
155 TIGR00515 accD acetyl-CoA carb 23.6 49 0.0013 13.5 3.9 142 118-296 96-267 (292)
156 pfam10640 Pox_ATPase-GT mRNA c 23.6 43 0.0011 13.9 1.4 10 60-69 69-78 (314)
157 PRK06176 cystathionine gamma-s 23.6 43 0.0011 13.9 1.4 113 59-187 88-207 (379)
158 PRK02261 methylaspartate mutas 23.4 50 0.0013 13.5 4.5 30 183-212 6-35 (137)
159 KOG1392 consensus 23.3 50 0.0013 13.5 2.0 94 57-159 40-149 (465)
160 TIGR02009 PGMB-YQAB-SF beta-ph 23.2 50 0.0013 13.4 4.3 62 261-335 136-210 (211)
161 COG0399 WecE Predicted pyridox 23.1 51 0.0013 13.4 2.2 149 28-185 17-195 (374)
162 TIGR03588 PseC UDP-4-keto-6-de 22.9 51 0.0013 13.4 3.2 49 93-142 81-153 (380)
163 TIGR01642 U2AF_lg U2 snRNP aux 22.7 46 0.0012 13.7 1.4 22 307-328 378-399 (577)
164 pfam08128 consensus 22.6 23 0.0006 15.8 -0.1 14 251-264 18-31 (42)
165 cd07887 RHD-n_Dorsal_Dif N-ter 22.6 26 0.00066 15.5 0.1 39 296-337 88-127 (173)
166 COG0260 PepB Leucyl aminopepti 22.6 49 0.0012 13.6 1.5 113 74-187 160-324 (485)
167 KOG0470 consensus 22.6 32 0.00081 14.9 0.6 32 301-332 289-326 (757)
168 pfam02329 HDC Histidine carbox 22.6 52 0.0013 13.4 3.9 52 84-145 95-146 (306)
169 TIGR01261 hisB_Nterm histidino 22.5 26 0.00067 15.4 0.2 81 35-141 29-109 (165)
170 TIGR02824 quinone_pig3 putativ 22.5 44 0.0011 13.8 1.3 14 178-191 84-97 (334)
171 TIGR02034 CysN sulfate adenyly 22.5 49 0.0013 13.5 1.6 115 62-205 109-270 (411)
172 cd00989 PDZ_metalloprotease PD 22.4 52 0.0013 13.3 3.1 28 161-188 13-40 (79)
173 KOG2876 consensus 22.2 33 0.00083 14.8 0.6 20 186-205 88-107 (323)
174 PRK09243 nicotinate phosphorib 22.2 39 0.001 14.2 1.0 12 131-142 189-200 (466)
175 COG0357 GidB Predicted S-adeno 22.2 53 0.0013 13.3 3.0 37 118-158 20-56 (215)
176 TIGR02638 lactal_redase lactal 21.8 54 0.0014 13.3 3.2 51 246-302 260-317 (380)
177 PRK10753 transcriptional regul 21.7 53 0.0014 13.3 1.6 12 174-185 59-70 (90)
178 PRK13936 phosphoheptose isomer 21.6 53 0.0014 13.3 1.6 17 177-193 108-124 (197)
179 pfam01512 Complex1_51K Respira 21.5 43 0.0011 14.0 1.1 38 97-138 30-69 (150)
180 COG0407 HemE Uroporphyrinogen- 21.3 49 0.0012 13.6 1.3 29 303-331 322-350 (352)
181 PRK13019 clpS ATP-dependent Cl 21.3 55 0.0014 13.2 4.5 66 268-333 21-92 (96)
182 PRK00414 gmhA phosphoheptose i 21.3 55 0.0014 13.2 1.7 16 177-192 108-123 (192)
183 pfam02110 HK Hydroxyethylthiaz 21.3 55 0.0014 13.2 4.0 51 90-141 19-83 (246)
184 PRK10115 protease 2; Provision 21.2 44 0.0011 13.9 1.1 23 235-258 464-486 (686)
185 COG4677 PemB Pectin methyleste 21.2 55 0.0014 13.2 2.7 41 145-191 115-155 (405)
186 cd00590 RRM RRM (RNA recogniti 21.1 44 0.0011 13.9 1.1 48 282-329 13-63 (74)
187 pfam04157 EAP30 EAP30/Vps36 fa 20.3 57 0.0015 13.0 5.0 40 284-331 176-215 (219)
188 cd01121 Sms Sms (bacterial rad 20.2 58 0.0015 13.0 4.0 61 119-202 182-244 (372)
189 PRK05457 heat shock protein Ht 20.2 58 0.0015 13.0 3.3 40 124-171 78-117 (289)
190 TIGR02873 spore_ylxY probable 20.1 50 0.0013 13.5 1.2 82 246-341 176-266 (269)
No 1
>TIGR00878 purM phosphoribosylformylglycinamidine cyclo-ligase; InterPro: IPR004733 The purine biosynthetic pathway in procaryotes enlists eleven enzymes, six of which use ATP. Enzymes 5 and 6 of this pathway, formylglycinamide ribonucleotide (FGAR) amidotransferase (PurL) and aminoimidazole ribonucleotide (AIR) synthetase (PurM) utilise ATP to activate the oxygen of an amide within their substrate toward nucleophilic attack by a nitrogen. AIR synthetase uses the product of PurL, formylglycinamidine ribonucleotide (FGAM) and ATP to make AIR, ADP and P(i).; GO: 0004641 phosphoribosylformylglycinamidine cyclo-ligase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1029.37 Aligned_cols=333 Identities=52% Similarity=0.885 Sum_probs=324.6
Q ss_pred CCHHHHCCCHHHHHHHHHHHHH-----HHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 8888908898999999999999-----98862673543667773157565544688718999568887899999982885
Q gi|254780569|r 9 LTYGQAGVNIEAGNRTVTQIKS-----AVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKN 83 (357)
Q Consensus 9 ~tY~~aGVdi~~~~~~v~~i~~-----~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~ 83 (357)
+|||+||||||+++++|++||+ ++++|+|+++.+++|||||+|+++.. |++|+||++||||||||+||++++||
T Consensus 1 ~tY~~AGVDI~~g~~~v~~i~~aarr~~v~~~~~~~~~~~~GgFagl~~l~~~-Y~~~~L~~~TDGVGTKl~vA~~~~kh 79 (338)
T TIGR00878 1 VTYADAGVDIEAGNEAVKRIKSAARRRLVKKTRRPGVMGGLGGFAGLFDLGDK-YKEPVLVSGTDGVGTKLKVAEAMDKH 79 (338)
T ss_pred CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC-CCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 97021067588999999998876544444331246665457752135115224-75238998428666899999972889
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 50168888854346788541122110000033203789999999999999860952214301000001365566336899
Q gi|254780569|r 84 DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFA 163 (357)
Q Consensus 84 ~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~ 163 (357)
|||||||||||||||+|+||||||||||||++|+|++++++|++||+++|+++||+|+|||||||||+|++++|||||||
T Consensus 80 DTiGIDlVAMnVNDl~~~GAEPl~flDYlAvGk~d~~~~~~i~~G~~eGC~~ag~aLvGGETAemPG~y~~g~YDlAGt~ 159 (338)
T TIGR00878 80 DTIGIDLVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKGIAEGCKQAGCALVGGETAEMPGLYRGGEYDLAGTA 159 (338)
T ss_pred CCEEEEEEEEECCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEECCEE
T ss_conf 83301248853286888477757876466606888899999999999888871732544752257788888650001318
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99741542113334555248999538655432320344445531155456676666630668753972012268888763
Q gi|254780569|r 164 VGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILR 243 (357)
Q Consensus 164 vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~ 243 (357)
||+||||+||+|++|+|||+||||+|||+||||||||||+|+.....+.+..+...++||||+||+|||||+++|+++++
T Consensus 160 VG~Vekd~iitG~~v~~GDv~igl~SSG~HSNG~SLvRKvl~~~~~~~~~~~~~~~gk~lgE~LL~PTRIYVKpiL~li~ 239 (338)
T TIGR00878 160 VGVVEKDEIITGEKVKPGDVLIGLGSSGIHSNGLSLVRKVLEDNAALDYEDTVEEEGKTLGEELLEPTRIYVKPILALIK 239 (338)
T ss_pred EEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99996212788232067878998317873112267765666430358877745756723144223896204478999973
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHH
Q ss_conf 04632222345420122012002544304787100489867999999966989889876524671169998689899999
Q gi|254780569|r 244 KTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCII 323 (357)
Q Consensus 244 ~~~~i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~ 323 (357)
+..+||||||||||||.+||+|+||++++|+||..+||+||||+|||+.|+|+.+|||||||||||||++|++|++++++
T Consensus 240 ~~~ev~GlAHiTGGGl~eNl~r~L~~~~~a~~D~~~~~~~piF~~i~~~G~V~~~EM~RTFNMGVGf~viv~~e~~~~al 319 (338)
T TIGR00878 240 SEKEVHGLAHITGGGLLENLLRRLPDGLKAVIDKGSWPQPPIFKWIQELGNVEEEEMFRTFNMGVGFVVIVPEEEVDKAL 319 (338)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 77860477755164034569986589978998568988316889998608987555543127751069981816589999
Q ss_pred HHHHHCCCCEEEEEEEEEC
Q ss_conf 9999779980899999977
Q gi|254780569|r 324 KKFQENNENIILIGEVTQR 342 (357)
Q Consensus 324 ~~l~~~g~~a~iIG~V~~~ 342 (357)
+.|.+++++||.||+|+++
T Consensus 320 ~~l~~~g~~a~~iG~V~~~ 338 (338)
T TIGR00878 320 ALLEEKGEKAWVIGEVIKG 338 (338)
T ss_pred HHHHHCCCEEEEECEEEEC
T ss_conf 9863069603441347509
No 2
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=100.00 E-value=0 Score=923.74 Aligned_cols=334 Identities=57% Similarity=0.993 Sum_probs=325.5
Q ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHH
Q ss_conf 88888908898999999999999988626735436677731575655446887189995688878999999828855016
Q gi|254780569|r 8 GLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIG 87 (357)
Q Consensus 8 ~~tY~~aGVdi~~~~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig 87 (357)
.+|||+|||||+++|+++++||+++++|++++|++++|+|||+|+++ .+|++|+||++|||||||++||+++++|++||
T Consensus 2 ~~tY~~aGVdi~~~~~~v~~ik~~~~~T~~~~v~~~iGgF~gl~~~~-~~~~~p~Lv~~tDGVGTK~~iA~~~~~~~tiG 80 (338)
T PRK05385 2 MMTYKDAGVDIEAGNELVERIKPAVKRTFRPEVLGGLGGFGGLFDLP-AGYKEPVLVSGTDGVGTKLKLAIDLGKHDTIG 80 (338)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECC-CCCCCCEEEECCCCCCHHHHHHHHHCCCCCHH
T ss_conf 86578859588999999999999998417977546876620445554-46899679971888718999999957614330
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEE
Q ss_conf 88888543467885411221100000332037899999999999998609522143010000013655663368999974
Q gi|254780569|r 88 IDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAV 167 (357)
Q Consensus 88 ~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v 167 (357)
||||||||||++|+||+|||||||+|+++++++.+++|++||+++|+++||+|+|||||||||+|++++|||||||||+|
T Consensus 81 ~DlVam~vNDil~~GA~Pl~flDY~a~~~l~~~~~~~iv~Gi~~~c~~~~~~LiGGETAemPg~y~~~~~DLaG~~VGiv 160 (338)
T PRK05385 81 IDLVAMCVNDLLVQGAEPLFFLDYIATGKLDPEVAAEVVKGIAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVV 160 (338)
T ss_pred HHHHHHCCCCEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 67897527776662867323455512078898999999999999999809804365210133435689773633799998
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 15421133345552489995386554323203444455311554566766666306687539720122688887630463
Q gi|254780569|r 168 ERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGK 247 (357)
Q Consensus 168 ~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~ 247 (357)
+|++++++++++|||+||||+|||+|||||||+||+++..+++++++.+. .++|++|+||+|||+|++++++++++ ..
T Consensus 161 ek~~ii~~~~i~~GDviiGl~SsG~HsNGySLiRki~~~~~~~~~~~~~~-~~~tlge~LL~PTriY~~~i~~l~~~-~~ 238 (338)
T PRK05385 161 EKDEIIDGSKVKEGDVLIGLASSGLHSNGYSLVRKILEVAGLDLDDTLPE-LGKTLGEELLEPTRIYVKPVLALLKE-GD 238 (338)
T ss_pred ECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHCCHHHHHHHHHHHHHHH-CC
T ss_conf 14223456668999889996079866550789999998749982325653-46869998635067767999999862-78
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 22223454201220120025443047871004898679999999669898898765246711699986898999999999
Q gi|254780569|r 248 IKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQ 327 (357)
Q Consensus 248 i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~ 327 (357)
||||||||||||++||+|+||++++++||.++||+||+|+|||+.|+++++||||||||||||+++|+|++++++++.++
T Consensus 239 Ikg~aHITGGGl~~Nl~Rilp~~l~a~Id~~~w~~P~iF~~i~~~G~i~~~EM~rtFNmGIGmvliV~~~~~~~v~~~l~ 318 (338)
T PRK05385 239 VKGMAHITGGGFIENLPRVLPEGLGAEIDKGSWPVPPIFKWLQKAGNVEEEEMYRTFNMGIGMVLIVPEEDADAALALLE 318 (338)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 13999825885003654115788069996677999889999998489899999874358222699983899999999999
Q ss_pred HCCCCEEEEEEEEECCC
Q ss_conf 77998089999997788
Q gi|254780569|r 328 ENNENIILIGEVTQRSE 344 (357)
Q Consensus 328 ~~g~~a~iIG~V~~~~~ 344 (357)
++|+++|+||+|++++.
T Consensus 319 ~~g~~a~~IG~V~~g~~ 335 (338)
T PRK05385 319 ARGEDAWVIGEVKEGEE 335 (338)
T ss_pred HCCCCCEEEEEEEECCC
T ss_conf 76998489899997986
No 3
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=912.07 Aligned_cols=342 Identities=54% Similarity=0.919 Sum_probs=331.6
Q ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCH
Q ss_conf 78888890889899999999999998862673543667773157565544688718999568887899999982885501
Q gi|254780569|r 7 RGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTI 86 (357)
Q Consensus 7 ~~~tY~~aGVdi~~~~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~i 86 (357)
..+||++||||||+++++|++||+.+++|+|+++++++||||++|+++...|+ |+|+++|||||||+++|+++++||||
T Consensus 2 ~~~tY~~aGVDi~~g~~~v~~ik~~vk~T~r~~v~gglGgf~~lf~l~~~~~~-p~Lv~~tDGVGTKl~~A~~~~k~dTi 80 (345)
T COG0150 2 TSLTYADAGVDIDAGNEAVERIKPAVKRTRRPEVMGGLGGFAGLFDLGQAYYK-PVLVSGTDGVGTKLLLAEDAGKHDTI 80 (345)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC-CEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 75347764878766899999999999862576534577641578872677754-26996288733899999980785432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEE
Q ss_conf 68888854346788541122110000033203789999999999999860952214301000001365566336899997
Q gi|254780569|r 87 GIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGA 166 (357)
Q Consensus 87 g~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~ 166 (357)
|||||||||||++|+||+|||||||+|++|++++..++|++|++++|+++||+|+||||||||++|++++|||||||||+
T Consensus 81 GID~VAM~VNDlv~~GAePl~flDY~A~gk~~~~~~~~iv~GiaeGc~~ag~aLvGGETAeMPg~y~~g~yDlaG~~vGv 160 (345)
T COG0150 81 GIDLVAMCVNDLVVQGAEPLFFLDYLATGKLDPEVAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGV 160 (345)
T ss_pred CCCHHEEECCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 40010120311321585207877667308898899999999999999984977853245568885268843031169999
Q ss_pred ECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 41542113334555248999538655432320344445531155456676666630668753972012268888763046
Q gi|254780569|r 167 VERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTG 246 (357)
Q Consensus 167 v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~ 246 (357)
|||+++|++++++|||+||||+|||+|||||||+||+++.....+.++.+...+++++|+||+|||||++++++++++.
T Consensus 161 vek~~ii~g~~i~~GDviigl~SSG~HSNGySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL~PTrIYvk~vL~l~~~~- 239 (345)
T COG0150 161 VEKDEIIDGSKVKEGDVIIGLASSGLHSNGYSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEG- 239 (345)
T ss_pred EECCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHCC-
T ss_conf 8756433601167887899833787677840899999975476544457522355789985277265558799997527-
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 32222345420122012002544304787100489867999999966989889876524671169998689899999999
Q gi|254780569|r 247 KIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKF 326 (357)
Q Consensus 247 ~i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l 326 (357)
.||||||||||||.+||||++|++++++||..+|++||+|+|||+.|+++.+|||||||||+||+++|++++++++++.|
T Consensus 240 ~vkg~AHITGGG~~eNl~Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l 319 (345)
T COG0150 240 DVKGMAHITGGGFVENLPRVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALL 319 (345)
T ss_pred CCCEEEEECCCCHHHHCHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHH
T ss_conf 85367775377714427333676616998279888758999999846989999998726766469997678899999999
Q ss_pred HHCCCCEEEEEEEEECCCCCCEEE
Q ss_conf 977998089999997788720089
Q gi|254780569|r 327 QENNENIILIGEVTQRSEKSPPIL 350 (357)
Q Consensus 327 ~~~g~~a~iIG~V~~~~~~~~~V~ 350 (357)
+++|++||+||+|+++....+.+.
T Consensus 320 ~~~g~~a~~iG~V~~~~~~~~~~~ 343 (345)
T COG0150 320 KEQGETAYVIGRVEAGEGEVVGVK 343 (345)
T ss_pred HHCCCCEEEEEEEEECCCCCCEEE
T ss_conf 856974289889983798655043
No 4
>KOG0237 consensus
Probab=100.00 E-value=0 Score=884.80 Aligned_cols=350 Identities=57% Similarity=0.980 Sum_probs=341.5
Q ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 87667888889088989999999999999886267354366777315756554468871899956888789999998288
Q gi|254780569|r 3 HERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGK 82 (357)
Q Consensus 3 ~~~~~~~tY~~aGVdi~~~~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~ 82 (357)
.+++.++||++||||||++|++|++||.++++|.||++...||||+|+|||+..+|+||+||+.|||||||++||+.+++
T Consensus 431 ~~st~sLTYkdSGV~id~Gn~lVqrIk~l~k~T~rpG~~~diGGFgglfdLk~ag~~d~~Lv~~tdGVGtKl~iA~~~~~ 510 (788)
T KOG0237 431 DDSTPSLTYKDSGVDIDAGNELVQRIKPLVKGTRRPGADADIGGFGGLFDLKQAGFKDPLLVSGTDGVGTKLKIAQETNI 510 (788)
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHCCCCCCEEEEECCCCCCEEEHHHHHCC
T ss_conf 03776421125675511548899999986121558874246666210000543588885688732676510201245076
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEE
Q ss_conf 55016888885434678854112211000003320378999999999999986095221430100000136556633689
Q gi|254780569|r 83 NDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162 (357)
Q Consensus 83 ~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~ 162 (357)
|+|+|+|||||||||++|+||+|||||||+|||+||..+.+++++||+++|++++|+|+||||||||++|++++||++||
T Consensus 511 hdtvG~DlvAm~vNDii~~gAePl~FLDYfa~gkLd~~va~~~v~gia~gC~qa~CaLvGGETaEMP~~Y~~g~yDlaG~ 590 (788)
T KOG0237 511 HDTVGIDLVAMNVNDIIVQGAEPLFFLDYFATGKLDVSVAEQVVKGIAEGCRQAGCALVGGETAEMPGMYAPGEYDLAGF 590 (788)
T ss_pred CCCCCEEEEEEEHHHHHHCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 54525000120011475517753002223530650417899999999987765065121563234778889883154551
Q ss_pred EEEEECCCCCCCC-CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 9997415421133-345552489995386554323203444455311554566766666306687539720122688887
Q gi|254780569|r 163 AVGAVERKELLSP-ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKI 241 (357)
Q Consensus 163 ~vG~v~k~~ii~~-~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~l 241 (357)
+||++++..+++. +.+.+||+++||+|||+|||||||+||++....+.|+|+.|+++..|||++||+|||||++.++++
T Consensus 591 Avga~e~~~iLp~~~ei~~GDVllGL~SsGvHSNGfSLvrkil~~~~l~~~~~~P~~~~~tlGd~LL~pTkiYvk~ll~~ 670 (788)
T KOG0237 591 AVGAVERTDILPKLNEIVAGDVLLGLPSSGVHSNGFSLVRKILARSGLSYKDPLPWDSSKTLGDELLAPTKIYVKQLLPL 670 (788)
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCEEEHHHHHHH
T ss_conf 67666226757772325568679954666645572789999998608765788999765641144426507751142788
Q ss_pred HHCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHH
Q ss_conf 63046322223454201220120025443047871004898679999999669898898765246711699986898999
Q gi|254780569|r 242 LRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDC 321 (357)
Q Consensus 242 l~~~~~i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~ 321 (357)
|++. .|||+||||||||.+|+||+||++++++||.++|++||+|+|+|+.|+++..||.||||||||||++|+||++++
T Consensus 671 i~~g-~vkg~AHITGGGl~ENipRvlp~~l~~~id~~twe~p~vF~Wl~~aG~v~~~em~RTfN~GiGmVlvVs~e~ve~ 749 (788)
T KOG0237 671 IRKG-GVKGLAHITGGGLTENIPRVLPDHLGAVIDADTWELPPVFKWLQQAGNVPDSEMARTFNCGIGMVLVVSPENVER 749 (788)
T ss_pred HHHC-CCCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECHHHHHH
T ss_conf 8735-512256641787212650116522453784443447378899987389987998877355665699986889999
Q ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCEEEEEE
Q ss_conf 99999977998089999997788720089963
Q gi|254780569|r 322 IIKKFQENNENIILIGEVTQRSEKSPPILYQG 353 (357)
Q Consensus 322 v~~~l~~~g~~a~iIG~V~~~~~~~~~V~~~G 353 (357)
+++.|+++++.+|+||+|+++.+..+++++.+
T Consensus 750 v~kel~~~~e~~~~iG~vv~r~~~s~~~~~~N 781 (788)
T KOG0237 750 VLKELTNHGEEAYRIGEVVNREGVSPQCVVVN 781 (788)
T ss_pred HHHHHHHCCEEEEEEEEEEECCCCCCCEEEEE
T ss_conf 99998527817999876763588876339961
No 5
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=0 Score=820.50 Aligned_cols=297 Identities=59% Similarity=1.025 Sum_probs=289.0
Q ss_pred CCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 66777315756554468871899956888789999998288550168888854346788541122110000033203789
Q gi|254780569|r 42 GEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQ 121 (357)
Q Consensus 42 ~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~ 121 (357)
+++|+|||+|+++..+|+||+||++|||||||++||+++++|++|||||||||||||+|+||+|||||||+|+++++++.
T Consensus 1 ~~iG~F~g~~~~~~~~~~~p~lv~~tDGVGTK~~la~~~~~~~~iG~DlVam~VNDi~~~GA~Pl~flDY~a~~~l~~~~ 80 (297)
T cd02196 1 GGIGGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFFLDYIATGKLDPEV 80 (297)
T ss_pred CCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCCEEEEEEEEEECCCCCHHH
T ss_conf 99665446453475689996799817886389999999577545303345511420111586613566774027889999
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 99999999999986095221430100000136556633689999741542113334555248999538655432320344
Q gi|254780569|r 122 ATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVR 201 (357)
Q Consensus 122 ~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvR 201 (357)
+++|++||+++|+++||+|+|||||||||+|++++|||||||||+|+|++++++++++|||+|||++|||+|||||||+|
T Consensus 81 ~~~iv~Gi~~~c~~~~~~liGGETAemPg~y~~~~~DlaG~~vGiv~k~~ii~~~~i~~GDviIgl~SsG~HsNGySLiR 160 (297)
T cd02196 81 AAEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDGSKIKPGDVLIGLPSSGLHSNGYSLVR 160 (297)
T ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEEEEEEEECHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 99999999999998399677545201446568997767568999997101356023778988999568876543288999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 44553115545667666663066875397201226888876304632222345420122012002544304787100489
Q gi|254780569|r 202 KIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVE 281 (357)
Q Consensus 202 kil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~p 281 (357)
|++++....+.++.+ ..++|++++||+|||+|++.+++++++ ..||||||||||||++||+|+||++++++||.++||
T Consensus 161 kil~~~~~~~~~~~~-~~~~tl~~~LL~PtriY~~~v~~l~~~-~~i~g~aHITGGGl~~Nl~Rvlp~~l~a~Id~~~~~ 238 (297)
T cd02196 161 KILFEEGLDYDDPEP-GLGKTLGEELLTPTRIYVKPILPLLEK-VLVKGMAHITGGGLPENLPRVLPEGLGAVIDLGSWE 238 (297)
T ss_pred HHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHCHHHHCCCCCEEEEECCCCC
T ss_conf 998744665446685-455609999710478888999999740-771137623785143131332568805998556679
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 86799999996698988987652467116999868989999999997799808999999
Q gi|254780569|r 282 VPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVT 340 (357)
Q Consensus 282 ~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~ 340 (357)
+||+|+|||+.|+++++|||||||||+||+++|+|++++++++.++++|++||+||+|+
T Consensus 239 ~p~iF~~i~~~g~i~~~Em~~tFNmGiGmvliv~~~~~~~v~~~l~~~g~~a~vIG~Vv 297 (297)
T cd02196 239 IPPIFKWIQKAGNVSEEEMYRTFNMGIGMVLIVSEEDADEVLEILEKLGEKAYVIGEVV 297 (297)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 98899999985898999999754787229999838999999999997699818987879
No 6
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=100.00 E-value=1.3e-42 Score=318.74 Aligned_cols=219 Identities=29% Similarity=0.508 Sum_probs=196.8
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 999568887899999982885501688888543467885411221100000332-0378999999999999986095221
Q gi|254780569|r 63 LVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 63 Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~-l~~~~~~~ii~gi~~~c~~~g~~li 141 (357)
|+.+|||++||+.+ .....|+++|+||+|||+||||+|++|+||+++++ .+++.++++++|+.++|+++||+++
T Consensus 2 l~~~tDg~~~~~~~-----dP~~~G~~av~~~~sDi~a~Ga~P~~~l~~l~~~~~~~~~~l~~i~~Gi~~~~~~~gv~iv 76 (222)
T cd00396 2 LAMSTDGINPPLAI-----NPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNGLEVDILEDVVDGVAEACNQLGVPIV 76 (222)
T ss_pred EEEEECCCCCCCCC-----CHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 59996688994001-----8888999999999888987599859999988834899878999999999999999698268
Q ss_pred CCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 43010000013655663368999974154211333455524899953865543232034444553115545667666663
Q gi|254780569|r 142 GGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEH 221 (357)
Q Consensus 142 GGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~ 221 (357)
||||+++|+... ..++++++++|.+++++++++++++|||+|+... +
T Consensus 77 GG~t~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~a~~GD~ii~~g--------~------------------------ 123 (222)
T cd00396 77 GGHTSVSPGTMG-HKLSLAVFAIGVVEKDRVIDSSGARPGDVLILTG--------V------------------------ 123 (222)
T ss_pred EEEEEECCCCCC-CCEEEEEEEEEEECCCCEECCCCCCCCCEEEEEC--------H------------------------
T ss_conf 135897588875-4617999999875565400656799999999989--------4------------------------
Q ss_pred CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 06687539720122688887630463222234542012201200254-43047871004898679999999669898898
Q gi|254780569|r 222 SLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIP-AHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300 (357)
Q Consensus 222 tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM 300 (357)
..++++++. ..||+|+|||+|||..+|.|+.. ++++++|+.++||+++.++|+++. ..|+
T Consensus 124 --------------~~~~~l~~~-~~v~a~~DiT~GGL~~~l~e~a~~s~~g~~i~~~~ip~~~~~~~~~~~----~~~~ 184 (222)
T cd00396 124 --------------DAVLELVAA-GDVHAMHDITDGGLLGTLPELAQASGVGAEIDLEAIPLDEVVRWLCVE----HIEE 184 (222)
T ss_pred --------------HHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHH----CHHH
T ss_conf --------------999987645-885699867987499999999987697699977657988789988550----3599
Q ss_pred HHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 76524671169998689899999999977998089999
Q gi|254780569|r 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGE 338 (357)
Q Consensus 301 ~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~ 338 (357)
+.+|||+.||+++|+|++++++++.++++|+++++||+
T Consensus 185 ~~~~~~~g~lli~v~~e~~~~v~~~l~~~gi~a~vIGr 222 (222)
T cd00396 185 ALLFNSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR 222 (222)
T ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 97522548699999789999999999966999797192
No 7
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=1.1e-39 Score=298.37 Aligned_cols=275 Identities=21% Similarity=0.329 Sum_probs=217.3
Q ss_pred HCCCCCCCC--CCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 267354366--777315756554468871899956888789999998288550168888854346788541122110000
Q gi|254780569|r 35 TKRAGTIGE--IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYL 112 (357)
Q Consensus 35 t~~~~v~~~--ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyi 112 (357)
+.+++|+-+ +|.-|++++++. ..||.+||-. ......+|+..|++|+|||+||||+|+++++.+
T Consensus 20 ~~~~~v~vg~~~gdDaavi~~~~-----~~lvvttDp~---------~~~~~~~G~~ava~~~sDI~amGa~P~~~l~~l 85 (298)
T cd06061 20 ADRDEVLVGPGGGEDAAVVDFGG-----KVLVVSTDPI---------TGAGKDAGWLAVHIAANDIATSGARPRWLLVTL 85 (298)
T ss_pred CCCCCEEECCCCCCEEEEEEECC-----CEEEEECCCC---------CCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHE
T ss_conf 99988877899985259998689-----8799984883---------058136999999987999998599828876121
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 033-2037899999999999998609522143010000013655663368999974154211333455524899953865
Q gi|254780569|r 113 ATS-QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSG 191 (357)
Q Consensus 113 a~~-~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG 191 (357)
.++ ..+.+.++++++||.++|+++||+++||||+..|++- .+.+++|++|.++++++++++++||||.|+...+.|
T Consensus 86 ~~p~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~---~~~i~~t~~G~~~~~~~~~~~~ak~GD~Iiltg~~G 162 (298)
T cd06061 86 LLPPGTDEEELKAIMREINEAAKELGVSIVGGHTEVTPGVT---RPIISVTAIGKGEKDKLVTPSGAKPGDDIVMTKGAG 162 (298)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEECCCCC---CCEEEEEEEEEECCCCEECCCCCCCCCEEEEECCCC
T ss_conf 18899999999999999999999839956443158647877---767999999995688663067799999999989840
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCC-CC
Q ss_conf 54323203444455311554566766666306687539720122688887630463222234542012201200254-43
Q gi|254780569|r 192 LHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIP-AH 270 (357)
Q Consensus 192 ~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiLp-~g 270 (357)
.|..|+ ......+....... .........++.+...+ +... +..+ ..+|+|.|||+|||..+|.||+. ++
T Consensus 163 ~~~~~l--~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~v~a~~Dis~gGL~~~L~e~~~~s~ 233 (298)
T cd06061 163 IEGTAI--LANDFEEELKKRLS----EEELREAAKLFYKISVV-KEAL-IAAE-AGVTAMHDATEGGILGALWEVAEASG 233 (298)
T ss_pred HHHHHH--HHHHHHHHHHCCCC----HHHHHHHHHHHCCCCHH-HHHH-HHHH-CCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 768999--99870665523467----58899878754022239-9999-7510-57559871675527778999997469
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 047871004898679999999669898898765246711699986898999999999779980899999
Q gi|254780569|r 271 LTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEV 339 (357)
Q Consensus 271 l~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V 339 (357)
++++|+.+++|++|.++++++..++++ |+.||+| +|+++|+|++++++++.++++|.++++||||
T Consensus 234 vg~~I~~~~iPi~~~~~~~~~~~~~dp---~~~~~~G-~ll~~v~~~~~~~v~~~l~~~g~~a~vIGeV 298 (298)
T cd06061 234 VGLRIEKDKIPIRQETKEICEALGIDP---LRLISSG-TLLITVPPEKGDELVDALEEAGIPASVIGKI 298 (298)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCH---HHHHHCC-EEEEEECHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 749997754688879999999749788---8897088-7999998899999999999649796999869
No 8
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00 E-value=3e-39 Score=295.25 Aligned_cols=285 Identities=19% Similarity=0.243 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988626735436677731575655446887189995688878999999828855016888885434678854
Q gi|254780569|r 23 RTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHG 102 (357)
Q Consensus 23 ~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~G 102 (357)
...+.|++++.+.+++.++ ++|.-++.++++.. .||.+||.. .+--..-....||+-.|++|+|||++||
T Consensus 5 ~~~~~i~~~~~~~~~~~~l-gigdDaAvi~~~~~-----~lvvttD~~----v~~p~~f~~~diG~~Av~~~~sDIaamG 74 (293)
T cd02197 5 LMQELIEELFLKAFDNPIL-EVLEDAAALLVGGG-----RLAFTTDSF----VVSPLFFPGGDIGKLAVCGTVNDLAMMG 74 (293)
T ss_pred HHHHHHHHHHHHHCCCCCC-CCCCCEEEECCCCC-----EEEEEECCC----CCCCCCCCCCCHHHHHHHCCHHHHHHCC
T ss_conf 5999999998863698667-88887698616998-----499993654----2277528984473787521287898659
Q ss_pred HHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 11221100000332-03789999999999999860952214301000001365566336899997415421133345552
Q gi|254780569|r 103 AEPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG 181 (357)
Q Consensus 103 A~Pl~fldyia~~~-l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~G 181 (357)
|+|++|+..+.++. .+.+.+++|++||.++|+++||+++||||+.+|.-.. +.+-++.|++|.++++++++.+++|||
T Consensus 75 a~P~~~l~sl~lp~~~~~~~l~~i~~Gi~~~~~~~gv~iVGGdT~v~~~~~~-~~l~is~t~iG~v~~~~~~~~~gA~pG 153 (293)
T cd02197 75 AKPLYLSLGFILEEGFPLEDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKA-DGIFINTTGIGVIPRGVIISPSNIRPG 153 (293)
T ss_pred CCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCC-CCEEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 9756763756558999999999999999999997197686166275147877-855998678898568855035789999
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 48999538655432320344445531155456676666630668753972012268888763046322223454201220
Q gi|254780569|r 182 DLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE 261 (357)
Q Consensus 182 D~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~ 261 (357)
|.|+...+-|.|..++.+.|.-+ .+... + ....+...+.+..++.....+|+|.|+|+|||..
T Consensus 154 D~iivTg~lG~~g~~il~~r~~~-----~~~~~--------~----~~d~~~~~~~~~~~l~~~~~v~Am~DiT~gGL~~ 216 (293)
T cd02197 154 DKIIVSGTIGDHGAAILAAREGL-----GFETD--------I----ESDCAPLNGLVEALLEAGPGIHAMRDPTRGGLAA 216 (293)
T ss_pred CEEEEECCHHHHHHHHHHHHCCC-----CCCCH--------H----HHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH
T ss_conf 99999686078899999852466-----64401--------4----6666666899999997078744741679755999
Q ss_pred CCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHC--CCCEEEEEE
Q ss_conf 120025-44304787100489867999999966989889876524671169998689899999999977--998089999
Q gi|254780569|r 262 NIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGE 338 (357)
Q Consensus 262 nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~--g~~a~iIG~ 338 (357)
.|.+|. .++++++|+.++||++|.++.+++..+++|.++. |+| +|+++|+|++++++++.|+++ |++|++|||
T Consensus 217 ~L~eia~aSgvg~~I~~~~iPv~~~v~~~~e~lg~DPl~~a---s~G-~ll~~v~~e~a~~vl~~l~~~~~G~~A~iIGe 292 (293)
T cd02197 217 VLNEIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLA---NEG-KFVAIVPPEDAEEVLEALRSHPLGKEAAIIGE 292 (293)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHH---CCC-EEEEEECHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999998599399940368888899999998593987883---485-39999878999999999972888998189866
Q ss_pred E
Q ss_conf 9
Q gi|254780569|r 339 V 339 (357)
Q Consensus 339 V 339 (357)
|
T Consensus 293 V 293 (293)
T cd02197 293 V 293 (293)
T ss_pred C
T ss_conf 9
No 9
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=8.9e-38 Score=284.91 Aligned_cols=286 Identities=23% Similarity=0.370 Sum_probs=220.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 90889899999999999998862673543667773157565544688718999568887899999982885501688888
Q gi|254780569|r 13 QAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVA 92 (357)
Q Consensus 13 ~aGVdi~~~~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlva 92 (357)
-.||.-.++-+-+.++....-+|.+++++-++|..|++++++. +..++..||+.-++.... +-| ..|+..||
T Consensus 12 ~~g~~~k~~~~~~~~~~~~~~~~~~~~~vvgpGdDAavi~i~~----~~~~~~~~d~~~~~~~~~---dPy-~gG~~aVa 83 (323)
T TIGR03267 12 FEGVTRKHPIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIGG----DDILLLAADGIWGKLLDA---DPW-WAGYCAVL 83 (323)
T ss_pred CCCCHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECC----CCEEEEEECCCCCCCCCC---CHH-HHHHHHHH
T ss_conf 8783100598999999864334558875424798606998789----858999976778875146---978-98999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCC-EEEEEEEEECCCC
Q ss_conf 543467885411221100000332037899999999999998609522143010000013655663-3689999741542
Q gi|254780569|r 93 MCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD-LAGFAVGAVERKE 171 (357)
Q Consensus 93 m~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~D-lag~~vG~v~k~~ 171 (357)
+|+|||+||||+|++++|+++++ +++.++++++||+++|+++|++++|||| .|+ ..|+ +..+++|++++++
T Consensus 84 ~~v~DIaamGA~Pla~ld~L~~~--~pe~~~~i~~Gi~~a~~~~gvpvVGG~t--~~~----~~~~~v~v~vvGiv~~~~ 155 (323)
T TIGR03267 84 VNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVLEGMREGAWKFGVPVVGGHT--HPD----TPYNALDVAIVGIAKEDC 155 (323)
T ss_pred HHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCEECCCC--CCC----CCCCEEEEEEEEEECCCC
T ss_conf 99888998087618863022679--8789999999999999874997766734--568----887705899999874111
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 11333455524899953865543232034444553115545667666663066875397201226888876304632222
Q gi|254780569|r 172 LLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKAL 251 (357)
Q Consensus 172 ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ 251 (357)
+++++.++|||.|+...+ |..+......+.+..... .. ..+++|. .+.++++.++ ..+++|
T Consensus 156 ~i~~~~a~~GD~ii~~~~---------l~g~~~~~~~~~~~~~~~-~~-----~~~~~~~---~~~~~~l~~~-~lv~a~ 216 (323)
T TIGR03267 156 IIRSDTAKPGDLIIFAID---------LDGRPYPSFPLNWDTTTM-KS-----PDYLRAQ---MDAVVEIAER-KLVKAG 216 (323)
T ss_pred EEECCCCCCCCEEEEEEC---------CCCCCCCCCCCCCCCCCC-CC-----HHHHHHH---HHHHHHHHHH-HHHHHH
T ss_conf 454478999999999964---------676116455344310134-67-----4777888---9989999986-678766
Q ss_pred CCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCC
Q ss_conf 3454201220120025-443047871004898679999999669898898765246711699986898999999999779
Q gi|254780569|r 252 AHITGGGLTENIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN 330 (357)
Q Consensus 252 ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g 330 (357)
.|||+|||+..|.+++ .++++++|+.++||.|+. +++.+++..|+ |.||+++|+|++.+++++++++++
T Consensus 217 ~DiS~gGL~~~l~em~~~s~~Ga~I~l~~iP~~~~---------~~~~~~l~~~~-~~~~l~tv~~~~~~~i~~~~~~~g 286 (323)
T TIGR03267 217 KDISNPGLIGTLGMLLEASRVGAEVDLESIPKPED---------VDMVTWLKMYP-GSGFVLTADPENVREIVRVLEDAG 286 (323)
T ss_pred HHCCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCCC---------CCHHHHHHHCC-CCCEEEEECHHHHHHHHHHHHHCC
T ss_conf 41264716779999986448837997531888889---------99999998489-983899986503999999999879
Q ss_pred CCEEEEEEEEECC
Q ss_conf 9808999999778
Q gi|254780569|r 331 ENIILIGEVTQRS 343 (357)
Q Consensus 331 ~~a~iIG~V~~~~ 343 (357)
+++++||+|++++
T Consensus 287 i~~~vIG~Vt~~~ 299 (323)
T TIGR03267 287 LTASVIGEVIEDG 299 (323)
T ss_pred CCEEEEEEEECCC
T ss_conf 9889999997598
No 10
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=100.00 E-value=3e-35 Score=267.25 Aligned_cols=288 Identities=20% Similarity=0.289 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHH-------HCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCC----CCHHHHH
Q ss_conf 9999999999886-------2673543667773157565544688718999568887899999982885----5016888
Q gi|254780569|r 22 NRTVTQIKSAVKS-------TKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKN----DTIGIDL 90 (357)
Q Consensus 22 ~~~v~~i~~~~~~-------t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~----~~ig~Dl 90 (357)
....+.|+++..+ -|....+.. -.-|+.+.++.. -|+.|||+ ...+-+ ..||.=+
T Consensus 11 ~~~~~Li~~lF~~R~l~~~R~f~n~~L~~-~eDaA~l~~~g~-----~la~sTDS--------fVv~PlFFpGGDIGkLA 76 (345)
T TIGR02124 11 KLMQQLIEELFLKRPLELKRAFGNEILAA-MEDAAVLELSGG-----RLAFSTDS--------FVVDPLFFPGGDIGKLA 76 (345)
T ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCCCC-CCCCCEECCCCC-----EEEEECCC--------EEECCCCCCCCCCCCEE
T ss_conf 99999988703468611201248750056-677413217896-----08998076--------37546336986711177
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCC---EEEE
Q ss_conf 88543467885411221100000332-----037899999999999998609522143010000013655663---3689
Q gi|254780569|r 91 VAMCVNDILTHGAEPLFFLDYLATSQ-----LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD---LAGF 162 (357)
Q Consensus 91 vam~vNDi~~~GA~Pl~fldyia~~~-----l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~D---lag~ 162 (357)
|+=-|||++++||||+ |++++. +.-+.+++|++||+++||++|+++|.|+| +|+++++.| |+.|
T Consensus 77 VcGTvNDvav~GA~P~----YLs~gfIlEEGfp~e~L~~iv~Sm~~~A~~aGV~iV~GDT----KVV~kG~~D~iFINTt 148 (345)
T TIGR02124 77 VCGTVNDVAVSGAKPL----YLSCGFILEEGFPIEDLERIVKSMAEAARKAGVKIVAGDT----KVVEKGKVDGIFINTT 148 (345)
T ss_pred EECCHHHHHHCCCHHH----HHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCC----CCCCCCCCCEEEEEEE
T ss_conf 7333246753384457----8507201340787678999999999999973976897573----5334577560588138
Q ss_pred EEEEECCC--CCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 99974154--2113334555248999538655432320344445531155456676666630668753972012268888
Q gi|254780569|r 163 AVGAVERK--ELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240 (357)
Q Consensus 163 ~vG~v~k~--~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ 240 (357)
++|+++.+ .-+..++++|||.||--.+-|-| |-++. -.++++.+..+.. ++.++|++ .|.+
T Consensus 149 GiG~~~~~~v~~~~~~~~~~GD~Ii~sG~iG~H--G~~Il---~~Regl~f~~~i~-SDCapL~~-----------lv~~ 211 (345)
T TIGR02124 149 GIGVVPSGGVIDISAHNIQPGDVIIVSGSIGDH--GAAIL---AVREGLGFETNIE-SDCAPLNG-----------LVEA 211 (345)
T ss_pred EEEEECCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHH---HHHHCCCCCCCCC-CHHHHHHH-----------HHHH
T ss_conf 888874784337653541457668981684067--89988---7650255256733-32776589-----------9999
Q ss_pred HHHCC---CCCCCCCCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECH
Q ss_conf 76304---6322223454201220120025-4430478710048986799999996698988987652467116999868
Q gi|254780569|r 241 ILRKT---GKIKALAHITGGGLTENIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHP 316 (357)
Q Consensus 241 ll~~~---~~i~~~ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~ 316 (357)
++... ..||+|+|.|+|||...|+++- .++.+++|+..++|+.+..+-+||..+++|.+.. |-|. +|++|+|
T Consensus 212 ll~~~g~~~~v~~~RD~TRGGLA~vLNE~A~~sg~~i~l~E~~iPV~eeV~gaCE~LGldPl~lA---NEG~-~v~~V~~ 287 (345)
T TIGR02124 212 LLAVGGYEPAVHAMRDATRGGLAAVLNEIAESSGVGIELEEEKIPVKEEVKGACELLGLDPLYLA---NEGK-LVLAVPP 287 (345)
T ss_pred HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHH---CCCE-EEEEECH
T ss_conf 98437987142376167855047899999996199279985247883789999986170325420---4762-8998283
Q ss_pred HHHHHHHHHHHHC--CCCEE-EEEEEEECCCCCCEEEEEEE
Q ss_conf 9899999999977--99808-99999977887200899631
Q gi|254780569|r 317 DNKDCIIKKFQEN--NENII-LIGEVTQRSEKSPPILYQGS 354 (357)
Q Consensus 317 e~a~~v~~~l~~~--g~~a~-iIG~V~~~~~~~~~V~~~G~ 354 (357)
|+|++++++||++ |.+|. +||+|++++++ +|+++..
T Consensus 288 E~A~~vLe~lk~hp~G~~A~YiIG~V~e~~~~--~V~l~t~ 326 (345)
T TIGR02124 288 EAAEKVLEILKSHPLGKDAAYIIGEVVEKKEG--LVVLKTA 326 (345)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC--EEEEEEC
T ss_conf 77999999986077643321563014737987--7999706
No 11
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=100.00 E-value=1.3e-32 Score=248.65 Aligned_cols=294 Identities=22% Similarity=0.274 Sum_probs=214.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCC--CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999886267354366777315756554468871899956888--7899999982885501688888543467885411
Q gi|254780569|r 27 QIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGV--GTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAE 104 (357)
Q Consensus 27 ~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGV--GTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~ 104 (357)
.|+.+.....++.+.-++|.-|++++++.. ..||.+||-. |+- .-........+|+-.|+.|+|||+||||+
T Consensus 8 lI~~~~~~~~~~~~~~giGDDaAvi~~~~~----~~lv~ttD~~ve~~H--F~~~~~~p~~iG~~av~~n~SDiaamGa~ 81 (320)
T PRK05731 8 LIARLFARRQRADVELGIGDDAALLDPPPG----QRLVVSTDTLVEGVH--FRPDWSSPEDLGYKALAVNLSDLAAMGAR 81 (320)
T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEECCC----CEEEEEECCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999997316798864689877799970899----879999556565767--78788999999999999878889971897
Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 22110000033-20378999999999999986095221430100000136556633689999741542113334555248
Q gi|254780569|r 105 PLFFLDYLATS-QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDL 183 (357)
Q Consensus 105 Pl~fldyia~~-~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~ 183 (357)
|++|+..++.+ +.+.+.++++++||.++|+++|++++||||...| .+.++.|++|.++++++++.++++|||.
T Consensus 82 P~~~~~sl~lP~~~~~~~l~~i~~Gi~~~~~~~gv~lvGGdt~~~~------~~~i~vt~iG~~~~~~~l~r~ga~~GD~ 155 (320)
T PRK05731 82 PAAFLLALALPKDVDEAWLEALADGLFALADRYGAELIGGDTTRGP------DLSISVTAIGEVPGGRALRRSGAKPGDL 155 (320)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC------CCEEEEEEEEECCCCCEEECCCCCCCCE
T ss_conf 2278885026886439999999999999999839569604312588------7179999996117996562367898987
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC
Q ss_conf 99953865543232034444553115545667666663066875397201226888876304632222345420122012
Q gi|254780569|r 184 ILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI 263 (357)
Q Consensus 184 IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL 263 (357)
|+....-|.+.-||.+.++ ...... ......+.+.+++|+..+ ..... +.. .+++|.|||+ ||...|
T Consensus 156 I~vTG~lG~s~~gl~~l~~-----~~~~~~---~~~~~~~~~~~~~p~~~~-~~~~~-l~~--~~~a~~DiSd-GL~~~L 222 (320)
T PRK05731 156 VAVTGTLGDSAAGLALLLN-----GGQASA---NEDAAALISRHLRPQPRV-GLGQA-LRG--LASAAMDISD-GLAADL 222 (320)
T ss_pred EEECCCCCHHHHHHHHHHC-----CCCCCC---CHHHHHHHHHHHCCCCCH-HHHHH-HHH--HHHHHCCCCH-HHHHHH
T ss_conf 8972774277889999847-----877784---055799999962898438-99999-776--5555320416-799999
Q ss_pred CCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCC---CCEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 0025-4430478710048986799999996698988987652467---11699986898999999999779980899999
Q gi|254780569|r 264 PRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG---IGMVIIVHPDNKDCIIKKFQENNENIILIGEV 339 (357)
Q Consensus 264 ~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmG---iGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V 339 (357)
.++. .++++++|+.+.+|+++..+.+. .++.|+. ..| ..|+++|+|++++++++.++++|.++++||+|
T Consensus 223 ~eia~~Sgvg~~I~~~~iP~~~~~~~~~----~~~~~~~---l~gGedyeLl~tv~~~~~~~~~~~~~~~gi~~~~IG~v 295 (320)
T PRK05731 223 GHIAEASGVGADIDADALPVSAALAALG----EDALRWA---LSGGEDYELLFTVPPENRGALLAAAKKLGVGVTIIGRV 295 (320)
T ss_pred HHHHHHCCCCEEEEHHHCCCCHHHHHHH----HHHHHHH---HCCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999986993998588789875665535----5499983---16787336999988999999999999759896999999
Q ss_pred EECCCCCCEEEEEEE
Q ss_conf 977887200899631
Q gi|254780569|r 340 TQRSEKSPPILYQGS 354 (357)
Q Consensus 340 ~~~~~~~~~V~~~G~ 354 (357)
++++. ..+..+|+
T Consensus 296 ~~~~g--v~l~~~g~ 308 (320)
T PRK05731 296 AGGEG--VLLDRDGK 308 (320)
T ss_pred ECCCC--EEEEECCC
T ss_conf 84884--79993998
No 12
>PRK00943 selenophosphate synthetase; Provisional
Probab=100.00 E-value=7.5e-32 Score=243.40 Aligned_cols=294 Identities=19% Similarity=0.258 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHCCCCCCC--CCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999988626735436--677731575655446887189995688878999999828855016888885434678854
Q gi|254780569|r 25 VTQIKSAVKSTKRAGTIG--EIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHG 102 (357)
Q Consensus 25 v~~i~~~~~~t~~~~v~~--~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~G 102 (357)
.+.++++-....+++++- +.+.-|+.++++.. ..||++||.-= -..+.-..+|+=.+++++|||++||
T Consensus 27 ~~~L~~~~~~~~~~~~lvg~~~~dDaavi~~~~~----~~lv~T~D~f~------piv~Dp~~~G~IAa~~alsDi~AmG 96 (347)
T PRK00943 27 ETILKGEQAKFLDPDLLVGNETRDDAAVYDLNNG----QAIVSTTDFFM------PIVDDPFDFGRIAATNAISDVYAMG 96 (347)
T ss_pred HHHHHHCCCCCCCCCEECCCCCCCCEEEEEECCC----EEEEEEECCCC------CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999736455789430117998775589972898----08999804666------7756878889999998576898838
Q ss_pred HHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 1122110000033--20378999999999999986095221430100000136556633689999741542113334555
Q gi|254780569|r 103 AEPLFFLDYLATS--QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180 (357)
Q Consensus 103 A~Pl~fldyia~~--~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~ 180 (357)
|+|+++|..+..+ ++..+.+++|++|+.++|+++||+|+||||.+-|.. . +.++++|+++++++++..+++|
T Consensus 97 a~P~~aL~~~~~p~~~l~~e~l~~il~g~~~~~~e~gv~ivGGHT~~~~e~----~--ig~~v~G~~~~~~~~~~~~a~~ 170 (347)
T PRK00943 97 GKPIMALAILGWPINVLPPEVAREVLEGGRDVCREAGIPLAGGHSIDAPEP----I--FGLAVTGVVHPERVKRNAGAKA 170 (347)
T ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCC----E--EEEEEEEEECCCCCCCCCCCCC
T ss_conf 948899988430202167999999999999999985990534656754665----2--5568986774632302688888
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 24899953865543232034444553115545667666663066875397201226888876304632222345420122
Q gi|254780569|r 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLT 260 (357)
Q Consensus 181 GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~ 260 (357)
||+||-..--|.| .-++ ...+..+. . +.-....+.+.+ +- ....++..+ ..+|+|.|||||||.
T Consensus 171 GD~liLTKplGtg---i~~~--a~~~~~~~---~---~~~~~a~~~m~~---ln-~~aa~l~~~-~~v~A~tDvTgfGL~ 234 (347)
T PRK00943 171 GDVLILTKPLGIG---VLTA--AEKKSLLD---P---EHQGLAIEVMCE---LN-TPGARFALL-PGVHAMTDVTGFGLL 234 (347)
T ss_pred CCEEEEECCCCCH---HHHH--HHHCCCCC---H---HHHHHHHHHHHH---CC-HHHHHHHHH-CCCCEEECCCCCHHH
T ss_conf 8889982575014---9999--98736899---9---999999999985---35-899999753-499622214533589
Q ss_pred HCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHH----------------------CCCCCEEEEECHH
Q ss_conf 0120025-4430478710048986799999996698988987652----------------------4671169998689
Q gi|254780569|r 261 ENIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTF----------------------NCGIGMVIIVHPD 317 (357)
Q Consensus 261 ~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtF----------------------NmGiGmvlvV~~e 317 (357)
++|.+|. .++++++|+.+++|+.|-...+.+.|-++.. .+|-| ..| |++++|+|+
T Consensus 235 GhL~Ema~~S~v~~~i~~~~iPv~~~v~~l~~~g~~~~~-~~~N~~~~~~~~~~~~~~~~~ll~DPQTSG-GLLiaV~~e 312 (347)
T PRK00943 235 GHLLEMARGSGVQARIDYAAIPRLPGVEELIALGCVPGG-TGRNFASYGHLMGELPREQRALLCDPQTSG-GLLVAVAPE 312 (347)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCC-HHHHHHHHHHCCCCCCHHHHHHCCCCCCCC-CEEEEECHH
T ss_conf 999998725896599974887665459999986898752-177898763214456646675343855777-679998599
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEE
Q ss_conf 89999999997799808999999778872008996
Q gi|254780569|r 318 NKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQ 352 (357)
Q Consensus 318 ~a~~v~~~l~~~g~~a~iIG~V~~~~~~~~~V~~~ 352 (357)
+++++++.|++.|+++++||+|+++..+.+.|.++
T Consensus 313 ~a~~~l~~L~~~G~~aa~IG~V~e~~~g~~~i~~~ 347 (347)
T PRK00943 313 AEDEVLATFAEFGIELAAIGELVEARGGRARVEVR 347 (347)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEC
T ss_conf 99999999996799967999999679994579859
No 13
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=100.00 E-value=3.3e-32 Score=245.88 Aligned_cols=257 Identities=21% Similarity=0.338 Sum_probs=191.1
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 26735436677731575655446887189995688878999999828855016888885434678854112211000003
Q gi|254780569|r 35 TKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLAT 114 (357)
Q Consensus 35 t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~ 114 (357)
+-++.|.-++|.-|++++++.. .++.+||++-+.. ....-..+|+-.|++|+|||+||||+|++|+++++.
T Consensus 25 ~~~~~V~~giGDDaAVi~~~~~-----~~v~~td~~~~~~----~~~dP~~~G~~ava~nlsDIaAMGa~P~~~l~~l~~ 95 (283)
T cd02192 25 FDSLGVAADLGDDAAAIPDGDG-----YLLLAADGIWPSL----VEADPWWAGYCSVLVNVSDIAAMGGRPLAMVDALWS 95 (283)
T ss_pred CCCCCCCCCCCCCEEEEEECCC-----EEEEEECCCCCCC----CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9888857579976589970897-----4999978546887----667979999999998888898707767988644258
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCC-EEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 32037899999999999998609522143010000013655663-36899997415421133345552489995386554
Q gi|254780569|r 115 SQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD-LAGFAVGAVERKELLSPENVCAGDLILGLPSSGLH 193 (357)
Q Consensus 115 ~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~D-lag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~H 193 (357)
+ +++.++++++|+.++|+++||+++||||... ..+. ++.+++|.++++. +..+.+||||.|+.....|
T Consensus 96 p--~~e~~~~i~~Gi~~~~~~~gv~lVGGdT~~~------~~~~~i~vt~~G~~~~~~-~~~~gAk~GD~i~vt~~l~-- 164 (283)
T cd02192 96 P--SAEAAAQVLEGMRDAAEKFGVPIVGGHTHPD------SPYNALSVAILGRARKDL-LISFGAKPGDRLILAIDLD-- 164 (283)
T ss_pred C--CHHHHHHHHHHHHHHHHHCCCCEECCCCCCC------CCCCEEEEEEEEECCCCC-EECCCCCCCCEEEEEEECC--
T ss_conf 9--8899999999999999875985765544567------888736899997407774-3227899999899998667--
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-CCCEE
Q ss_conf 32320344445531155456676666630668753972012268888763046322223454201220120025-44304
Q gi|254780569|r 194 SNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAI-PAHLT 272 (357)
Q Consensus 194 sNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiL-p~gl~ 272 (357)
|- ........+.. .......+++|. .+...++.. ...+++|.|||+|||...|.+++ .++++
T Consensus 165 --g~-----~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~l~~-~~~~~A~~DiSdgGL~~~l~eia~aSgvG 227 (283)
T cd02192 165 --GR-----VHPSPPPNWDA------TTMKSPALLRRQ---IALLPELAE-RGLVHAAKDISNPGIIGTLGMLLEASGVG 227 (283)
T ss_pred --CC-----CCCCCCCCCCC------CCCCCHHHHHHH---HHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf --53-----05344234231------012467777768---899999998-64788886213112788999999976980
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 787100489867999999966989889876524671169998689899999999977998089999
Q gi|254780569|r 273 ASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGE 338 (357)
Q Consensus 273 a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~ 338 (357)
++|+.+++|+|+ +++++|++..|+ +.+|+++|+|++++++++.++++|+++++|||
T Consensus 228 a~I~~~~iP~~~---------~~~~~~~L~~~~-~~~ll~tv~pe~~~~v~~~~~~~gv~~~~IGE 283 (283)
T cd02192 228 AEIDLDAIPRPE---------GVDLERWLKCFP-GFGFLLTARPENADEVVAVFAAVGITAAVIGE 283 (283)
T ss_pred EEEECCCCCCCC---------CCCHHHHHHCCC-CCCEEEEECHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999702387889---------999899987199-86159998851399999999986998898395
No 14
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=99.97 E-value=9.8e-31 Score=235.59 Aligned_cols=262 Identities=20% Similarity=0.268 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999998862673543--667773157565544688718999568887899999982885501688888543467885
Q gi|254780569|r 24 TVTQIKSAVKSTKRAGTI--GEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTH 101 (357)
Q Consensus 24 ~v~~i~~~~~~t~~~~v~--~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~ 101 (357)
+.+.++++. ...+++++ .++|.-+++++++. +.+||.+||.- -.-.+.-..+|+=.|++++|||++|
T Consensus 19 L~~~l~~~~-~~~~~~vlvg~~~gdDaAvi~~~~----~~~lv~t~D~f------~~~v~dp~~~G~~Av~~alsDiaam 87 (287)
T cd02195 19 LSQLLAGLP-LPTDPNLLVGLGTGDDAAVYRLPG----GLALVQTTDFF------PPIVDDPYLFGRIAAANALSDIYAM 87 (287)
T ss_pred HHHHHHHCC-CCCCCCCCCCCCCCCCEEEEEECC----CEEEEEECCCC------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999997377-878955023899877548997189----81899975787------7766598999999999866469884
Q ss_pred HHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 411221100000332----0378999999999999986095221430100000136556633689999741542113334
Q gi|254780569|r 102 GAEPLFFLDYLATSQ----LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPEN 177 (357)
Q Consensus 102 GA~Pl~fldyia~~~----l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~ 177 (357)
||+|++++..+..+. .+.+.++++++|+.++|+++||+|+||||.+-|+ ..++.+++|.+++++++..++
T Consensus 88 Ga~P~~~l~~l~lP~~~~~~~~~~l~~i~~Gi~~~~~~~gv~ivGGhT~~~~~------~~i~~tv~G~~~~~~~i~~~~ 161 (287)
T cd02195 88 GAKPLSALAIVTLPRKLPALQEEVLREILAGGKDKLREAGAVLVGGHTIEGPE------PKYGLSVTGLVHPNKILRNSG 161 (287)
T ss_pred CCCHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEECCCC------CEEEEEEEEEECCCCCEECCC
T ss_conf 58769999880277777511299999999999999998299577553320888------668888998875776254268
Q ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55524899953865543232034444553115545667666663066875397201226888876304632222345420
Q gi|254780569|r 178 VCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGG 257 (357)
Q Consensus 178 i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGG 257 (357)
+||||.|+-...-|. |.-+... .. ... +...-....+.+.+|.+ ....++.+ ..+|+|.|||+|
T Consensus 162 ak~GD~IivTk~lG~---g~~~~a~--~~---~~~---~~~~~~~~~~~~~~~~~----~~~~l~~~-~~v~Am~DiT~g 225 (287)
T cd02195 162 AKPGDVLILTKPLGT---GILFAAE--MA---GLA---RGEDIDAALESMARLNR----AAAELLRK-YGAHACTDVTGF 225 (287)
T ss_pred CCCCCEEEEECCCCH---HHHHHHH--HC---CCC---CHHHHHHHHHHHHHHHH----HHHHHHHH-CCCCEEECCCCC
T ss_conf 999999999578758---9999998--72---667---86889999999853139----99999865-587333236554
Q ss_pred HHHHCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 1220120025-443047871004898679999999669898898765246711699986898999999999779980899
Q gi|254780569|r 258 GLTENIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILI 336 (357)
Q Consensus 258 Gl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iI 336 (357)
||..+|.+|+ .++++++|+.+.+|+. | +.| ||+++|+|++++++++.|++.|.+|++|
T Consensus 226 GL~g~L~ema~aSgvg~~i~~~~IPv~------q--------------tsG-~ll~~v~~~~a~~~~~~l~~~g~~a~iI 284 (287)
T cd02195 226 GLLGHLLEMARASGVSAEIDLDKLPLL------Q--------------TSG-GLLAAVPPEDAAALLALLKAGGPPAAII 284 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCEE------E--------------ECC-CEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf 789999999997799099970448779------7--------------158-2599986899999999999669984999
Q ss_pred EEE
Q ss_conf 999
Q gi|254780569|r 337 GEV 339 (357)
Q Consensus 337 G~V 339 (357)
|+|
T Consensus 285 G~V 287 (287)
T cd02195 285 GEV 287 (287)
T ss_pred EEC
T ss_conf 779
No 15
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.1e-30 Score=230.00 Aligned_cols=293 Identities=20% Similarity=0.272 Sum_probs=210.0
Q ss_pred HHHHHHHHHHCC--C-CCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999886267--3-5436677731575655446887189995688878999999828855016888885434678854
Q gi|254780569|r 26 TQIKSAVKSTKR--A-GTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHG 102 (357)
Q Consensus 26 ~~i~~~~~~t~~--~-~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~G 102 (357)
+.|++.+.+.+. . .+.-..|.-++.+++.. -+|+.+||.+=-.= ....=..||+=+|+-++||++++|
T Consensus 16 ~li~~~il~~~~~~~~~v~~~~g~D~~~i~l~~-----~~la~tTD~~~i~P----~ff~~~diG~lAV~gt~NDlav~G 86 (339)
T COG0309 16 ELINKVILPNFGRRDVNVGLANGEDAAIIDLGD-----GVLAFTTDPFVIDP----LFFPGGDIGKLAVHGTANDVAVSG 86 (339)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC-----CEEEEEECCEEECC----CCCCCCCEEEEEEEEEHHHHHHCC
T ss_conf 999999775168666654865566411340378-----46999818807546----645788628999998622544058
Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 1122110000-033203789999999999999860952214301000001365566336899997415421133345552
Q gi|254780569|r 103 AEPLFFLDYL-ATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG 181 (357)
Q Consensus 103 A~Pl~fldyi-a~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~G 181 (357)
|+|.+|.--+ --..++.+.+++|+++|.++|+++||++++|||...|+.- ...-+..+++|+++++..++.+++|||
T Consensus 87 A~P~~l~~~lil~eg~~~e~l~~i~~si~e~a~~~Gv~IvtGdTkV~~~~~--~~~vi~tT~iG~~~~~~~v~~~~~~~G 164 (339)
T COG0309 87 AKPRYLSVGLILPEGLPIEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGK--DPIVINTTGIGIIDKEILVSPSGARPG 164 (339)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCC--CCCEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 986002677735899987899999999999999839749826766615998--772898646775137760145789988
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 48999538655432320344445531155456676666630668753972012268888763046322223454201220
Q gi|254780569|r 182 DLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE 261 (357)
Q Consensus 182 D~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~ 261 (357)
|.||-..|-|+| |.|+.-+..... + +....++...+++.+.+- ...+.+.+.. .+++|+|.|+|||..
T Consensus 165 D~vI~tg~~g~h--ga~ila~~~~~~---l-~~~l~sD~~~~~~~~~~~----l~~~~~~~~~--~vtAMhDaTrGGla~ 232 (339)
T COG0309 165 DAVIVTGTIGIH--GASILAHRFGEE---L-ETELGSDCAPLAKLVKAL----LSVVGEALAA--AVTAMHDATRGGLAG 232 (339)
T ss_pred CEEEECCCHHHH--HHHHHHHHCCHH---H-CCCHHHHHHHHHHHHHHH----HHCCHHHHHH--HHHHCCCCCHHHHHH
T ss_conf 889981881688--999998752022---0-332356678889999988----6200577665--676503875367889
Q ss_pred CCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCC-CCEEEEEEE
Q ss_conf 120025-443047871004898679999999669898898765246711699986898999999999779-980899999
Q gi|254780569|r 262 NIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN-ENIILIGEV 339 (357)
Q Consensus 262 nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g-~~a~iIG~V 339 (357)
.|.++- .+++++.|+.+++|+.+..+-+|+..+++|.++. |-|. ++++|+|++++++++.|++++ .+|.+||+|
T Consensus 233 aLnEmA~aSgvgi~I~ee~Ipv~~eVr~vce~lGiDPl~~a---nEG~-lv~~V~~~~a~~~l~~L~~~~~~~A~iIGeV 308 (339)
T COG0309 233 ALNEMAEASGVGISIEEEKIPVREEVRGVCELLGLDPLELA---NEGK-LVIAVPPEHAEEVLEALRSHGLKDAAIIGEV 308 (339)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHH---CCCE-EEEEECHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999997498499962466664899999998398878872---5860-9999788999999999986499542268998
Q ss_pred EECCCC
Q ss_conf 977887
Q gi|254780569|r 340 TQRSEK 345 (357)
Q Consensus 340 ~~~~~~ 345 (357)
++++..
T Consensus 309 ~~~~~~ 314 (339)
T COG0309 309 VEEKGG 314 (339)
T ss_pred ECCCCC
T ss_conf 326883
No 16
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=99.97 E-value=6.1e-29 Score=223.02 Aligned_cols=285 Identities=21% Similarity=0.289 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999998862673543667773157565544688718999568887899999982885501688888543467885
Q gi|254780569|r 22 NRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTH 101 (357)
Q Consensus 22 ~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~ 101 (357)
.++++++.+... ..+.++-++|.-|++++.+. ..+|.+||+.--....-..+ ....+|+-.|+.|+|||+||
T Consensus 3 ~~lI~~~~~~~~--~~~~~~~g~GDDaavi~~~~-----~~lv~ttD~~~e~~hf~~~~-~p~~iG~~av~~nlSDIaam 74 (291)
T cd02194 3 FELIDRLFKRLG--AGPGVLLGIGDDAAVLKPPG-----GRLVVTTDTLVEGVHFPPDT-TPEDIGWKALAVNLSDLAAM 74 (291)
T ss_pred HHHHHHHHHHCC--CCCCCCCCCCCCEEEEEECC-----CEEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHC
T ss_conf 899999960347--99985358988879996099-----76999966654666689999-98999999999888889873
Q ss_pred HHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 411221100000332-0378999999999999986095221430100000136556633689999741542113334555
Q gi|254780569|r 102 GAEPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180 (357)
Q Consensus 102 GA~Pl~fldyia~~~-l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~ 180 (357)
||+|++++..+..++ .+.+.++++++||.++|++.|++++||+|..-+ .+-++.|++|.+++++++..++++|
T Consensus 75 Ga~P~~~~~sl~lp~~~~~~~l~~i~~Gi~~~~~~~gv~ivGGdt~~~~------~~~i~vt~iG~~~~~~~i~r~~ak~ 148 (291)
T cd02194 75 GARPLGFLLSLGLPPDTDEEWLEEFYRGLAEAADRYGVPLVGGDTTSGS------ELVISVTALGEVEKGKPLRRSGAKP 148 (291)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC------CEEEEEEEEEEECCCCEEECCCCCC
T ss_conf 8961235776506899989999999999999999869806613412356------5489999999976884341157998
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 24899953865543232034444553115545667666663066875397201226888876304632222345420122
Q gi|254780569|r 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLT 260 (357)
Q Consensus 181 GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~ 260 (357)
||.|+-...-|.+..|+.+.. .... .+......+.+.+++|...+ ..... +.+ ..+++|.|||+ ||.
T Consensus 149 GD~i~vtg~~G~~~~gl~~~~-----~~~~----~~~~~~~~~~~~~~~p~~~i-~~~~~-l~~-~~v~a~~DiSd-GL~ 215 (291)
T cd02194 149 GDLLYVTGTLGDAAAGLALLL-----GGLK----LPEELYEELIERHLRPEPRL-ELGRA-LAE-GLATAMIDISD-GLL 215 (291)
T ss_pred CCEEEEECCCCHHHHHHHHHH-----CCCC----CCCHHHHHHHHHHHCCCCHH-HHHHH-HHH-HHHHHHHCCCH-HHH
T ss_conf 997999467427799999996-----6887----77225799999864888529-99999-985-00044521005-799
Q ss_pred HCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCC--CCEEEEECHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 01200254-430478710048986799999996698988987652467--116999868989999999997799808999
Q gi|254780569|r 261 ENIPRAIP-AHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG--IGMVIIVHPDNKDCIIKKFQENNENIILIG 337 (357)
Q Consensus 261 ~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmG--iGmvlvV~~e~a~~v~~~l~~~g~~a~iIG 337 (357)
..|.++.. ++++++|+.+.+|+++.++- ...+.++.|+.- +.| ..|+++|+|+++++ .+++.+.++.+||
T Consensus 216 ~~l~eia~~S~vg~~I~~~~ip~~~~~~~--~~~~~~~~~~~l--~gGedy~ll~tv~~~~~~~---~~~~~~~~~~~IG 288 (291)
T cd02194 216 ADLGHIAEASGVGAVIDLDKLPLSPALRA--AELGEDALELAL--SGGEDYELLFTVPPENAEA---AAAKLGVPVTVIG 288 (291)
T ss_pred HHHHHHHHHCCCEEEEEHHHCCCCHHHHH--HHCCCCHHHHHH--HCCCCEEEEEEECHHHHHH---HHHHCCCCEEEEE
T ss_conf 99999999849809985886899989998--762999999997--0997407999977899999---9987398958998
Q ss_pred EEE
Q ss_conf 999
Q gi|254780569|r 338 EVT 340 (357)
Q Consensus 338 ~V~ 340 (357)
+|+
T Consensus 289 ~vt 291 (291)
T cd02194 289 RVT 291 (291)
T ss_pred EEC
T ss_conf 869
No 17
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=99.97 E-value=6.7e-29 Score=222.72 Aligned_cols=297 Identities=17% Similarity=0.201 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999998862673543667773157565544688718999568887899999982885501688888543467885
Q gi|254780569|r 22 NRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTH 101 (357)
Q Consensus 22 ~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~ 101 (357)
-..++.|.++.++++. .++...+.-++.+..+ +-.++.+|||+=.++..- -++ +|.-.|.-++||+++|
T Consensus 14 ~~~~~~i~~~~~~~~~-~~~l~~~dDaa~~~~~-----~~~iv~ttDg~~~~~~~f----P~~-~G~~av~~tvnDla~m 82 (346)
T cd02691 14 FYVHEKLAELIGKTGE-VSIVAQDDDAGVDAAD-----VEYIVVAIDGIHSRLSDF----PFL-AGFHATRAALRDVMVM 82 (346)
T ss_pred HHHHHHHHHHHHHCCC-CCCCCCCCCEEEECCC-----CCEEEEEECCEEECCCCC----CCC-CHHHEEEEEHHHHHHC
T ss_conf 4999999999865368-6444567864675379-----957999947778556668----511-2133476556667764
Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCC-CCCCCCCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf 41122110000033-20378999999999999986095221430100000-13655663368999974154211333455
Q gi|254780569|r 102 GAEPLFFLDYLATS-QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPG-LYHDRDYDLAGFAVGAVERKELLSPENVC 179 (357)
Q Consensus 102 GA~Pl~fldyia~~-~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~-vy~~~~~Dlag~~vG~v~k~~ii~~~~i~ 179 (357)
||+|++++.-+..+ ..+.+.++++++||.++|+++|++|+||+|..+++ .+.....-....++|+.++. .+..+++|
T Consensus 83 GA~P~~l~~~~~l~eg~~~~~L~~i~~~m~~aa~~~gV~iV~GdT~vv~gd~v~g~~i~~~v~~iGv~~~~-~~~~~~Ar 161 (346)
T cd02691 83 GARPVALLSDIHLADDGDVGKLFDFTAGVTAVSEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKSD-PSRRKNAE 161 (346)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCEEEEEEEEEEEEEEECCCC-CCCCCCCC
T ss_conf 88433038999966999999999999999999998599897147368369946643689988887740477-64114799
Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 52489995386554323203444455311554566766666306687539720122688887630463222234542012
Q gi|254780569|r 180 AGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGL 259 (357)
Q Consensus 180 ~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl 259 (357)
|||+|+-..+.|=|+=.-+.+|.-.+ +.. ..++.-..+.+ ...+.+... ...||+|.|+|.|||
T Consensus 162 pGD~IlvsggiGg~~ia~~a~~~g~~-------~~~----~et~~~~~~~~----~~~l~~~~l-~~~IhaMrD~TrGGL 225 (346)
T cd02691 162 PGDLILMTEGAGGGTITTTAIYHGMP-------DVV----EETLNVDFIKA----CEALRDSGL-VSKVHSMTDVTNGGI 225 (346)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCC-------CCC----HHCCCHHHHHH----HHHHHHHHH-HCCCEEEECCCCHHH
T ss_conf 99999997887841788999871464-------321----00012046788----999998531-047338776862458
Q ss_pred HHCCCCCC-CCCEEEEECCCCC--CCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 20120025-4430478710048--98679999999669898898765246711699986898999999999779980899
Q gi|254780569|r 260 TENIPRAI-PAHLTASINLNSV--EVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILI 336 (357)
Q Consensus 260 ~~nL~RiL-p~gl~a~Id~~~~--p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iI 336 (357)
...|+++. .++++++||.+++ |+.|..+-.++..++++... =|- |+++++||++++++++.|++.|..+.+|
T Consensus 226 a~~LnEiA~~SgVgi~Idee~I~~pv~p~V~~~cE~LgiDPL~v---ane--g~Lii~p~e~~~~i~~~l~~~Gv~a~~I 300 (346)
T cd02691 226 RGDALEISKTAGVSLVFDEEKVRSLINPKVLKMLEELGIDPLGV---SLD--SLMIIAPEEDAVDIIRTLREAGVRADEV 300 (346)
T ss_pred HHHHHHHHHHCCCEEEEEHHHCCCCCCHHHHHHHHHHCCCHHHC---CCC--CEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88999999866975999767704656889999999859870102---556--2699966778899999998769973899
Q ss_pred EEEEECCCCCCEEEEEE
Q ss_conf 99997788720089963
Q gi|254780569|r 337 GEVTQRSEKSPPILYQG 353 (357)
Q Consensus 337 G~V~~~~~~~~~V~~~G 353 (357)
|+|++++.. .++.+|
T Consensus 301 G~V~~g~~~--~l~~~g 315 (346)
T cd02691 301 GRVEEGRGV--PLVVTG 315 (346)
T ss_pred EEEEECCCC--EEEECC
T ss_conf 999848961--786389
No 18
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II; InterPro: IPR010074 Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most bacteria. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=99.95 E-value=4.9e-29 Score=223.71 Aligned_cols=277 Identities=22% Similarity=0.400 Sum_probs=213.4
Q ss_pred CCCCCCCCCC-CCEEEEECCCCC--------CCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6735436677-731575655446--------8871899956888789999998288550168888854346788541122
Q gi|254780569|r 36 KRAGTIGEIG-GFGGLFDLKKAG--------FVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPL 106 (357)
Q Consensus 36 ~~~~v~~~ig-~f~~~~~l~~~~--------~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl 106 (357)
..++|+.|+| .-||+.|++... .++|--|-=-+|..|= |.=-|=||+||||+|+
T Consensus 55 k~~~Vi~GPGWeDAGVV~i~D~~avV~k~ESHNHPSaiePY~GAATG-----------------VGGI~RDvlsMGArPI 117 (763)
T TIGR01736 55 KAPNVIQGPGWEDAGVVDIDDGYAVVFKIESHNHPSAIEPYNGAATG-----------------VGGIVRDVLSMGARPI 117 (763)
T ss_pred CCCCEEECCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCCC-----------------CCEEEEEEEEECCEEE
T ss_conf 68725864553686068875977999999655889742588870002-----------------1606876776366301
Q ss_pred HHHHHHCCCCHHHH-------H----HHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 11000003320378-------9----999999999999860952214301000001365566336899997415421133
Q gi|254780569|r 107 FFLDYLATSQLNPD-------Q----ATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSP 175 (357)
Q Consensus 107 ~fldyia~~~l~~~-------~----~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~ 175 (357)
++||-|-+|.++.+ . ++.||+||++.-...|||.|||||.-.+ -|..|.+ +..+|||+|++++|+++
T Consensus 118 ALlD~LrFG~l~~~k~ekL~~k~ryL~~gVV~GI~dYGNriGVPTVgGE~~FD~-~Y~~NpL-VNv~CvGlv~~d~I~~g 195 (763)
T TIGR01736 118 ALLDSLRFGPLDSPKTEKLLRKNRYLFEGVVKGISDYGNRIGVPTVGGEVEFDE-SYNGNPL-VNVMCVGLVRKDDIVTG 195 (763)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEECCCCCEEEECC-CCCCCCC-EEEEEEEEECCCCEEEE
T ss_conf 001653478688754477401040011022300457766421013672777766-7788982-55589887456760330
Q ss_pred CCCCCCEEEEEECC----CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 34555248999538----65543232034444553115545667666663066875397201226888876304632222
Q gi|254780569|r 176 ENVCAGDLILGLPS----SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKAL 251 (357)
Q Consensus 176 ~~i~~GD~IIgl~S----sG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ 251 (357)
.--+|||.||-..| +||| |=|.|=+-|.++ ........-.+||.+++ |+-..++++++++ +.|+||
T Consensus 196 ~A~~~G~~lvl~G~~TGRDGig--GA~FAS~eL~E~-----~eee~RPAVQvGDPF~E--K~LieA~LEa~~~-g~V~g~ 265 (763)
T TIGR01736 196 KAKGPGNKLVLVGSKTGRDGIG--GATFASEELSEE-----AEEEDRPAVQVGDPFTE--KLLIEATLEAVDT-GLVKGI 265 (763)
T ss_pred CCCCCCCEEEEEECCCCCCCCC--CCEECCCCCCCC-----HHHHCCCCEEECCCHHH--HHHHHHHHHHHHC-CCEEEE
T ss_conf 0258984499941377877657--512224212722-----00332884110771123--5799999988724-926887
Q ss_pred CCCCCCHHHHCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHH----HHHCCCCCEEEEECHHHHHHHHHHH
Q ss_conf 34542012201200254-430478710048986799999996698988987----6524671169998689899999999
Q gi|254780569|r 252 AHITGGGLTENIPRAIP-AHLTASINLNSVEVPQIISWLSKKAHVKPAEVL----RTFNCGIGMVIIVHPDNKDCIIKKF 326 (357)
Q Consensus 252 ahITGGGl~~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~----rtFNmGiGmvlvV~~e~a~~v~~~l 326 (357)
-|.=||||+.-..+|-. .+++++|++++.|. +|. ++++.||. |= .|+++|.|++.|++++++
T Consensus 266 kDLGaaGLt~a~~EMa~~gg~G~~~~LDkVPl-------RE~-gM~P~EimlSESQE-----RML~vv~P~~v~~~~~i~ 332 (763)
T TIGR01736 266 KDLGAAGLTSASSEMAAKGGLGAEIDLDKVPL-------REE-GMTPYEIMLSESQE-----RMLLVVAPEDVEEVLEIF 332 (763)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEECCCCC-------CCC-CCCHHHHHHHHCCC-----CEEEEECCCCHHHHHHHH
T ss_conf 31187137899999971588726999733354-------698-87488888752100-----117850478789999999
Q ss_pred HHCCCCEEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 977998089999997788720089963151
Q gi|254780569|r 327 QENNENIILIGEVTQRSEKSPPILYQGSLI 356 (357)
Q Consensus 327 ~~~g~~a~iIG~V~~~~~~~~~V~~~G~~~ 356 (357)
+|++.++.+||+||+ ++.-++.|+|..+
T Consensus 333 ~KyeL~~sVvG~vT~--~~~~~~~~~Ge~v 360 (763)
T TIGR01736 333 EKYELDASVVGEVTD--EGRIRVKYKGEVV 360 (763)
T ss_pred HHHCCCEEEEEEEEC--CCEEEEEECCEEE
T ss_conf 972898499989934--8669999938399
No 19
>TIGR01379 thiL thiamine-monophosphate kinase; InterPro: IPR006283 This family represents thiamine-monophosphate kinase, an enzyme that converts thiamine monophosphate into thiamine pyrophosphate (TPP, coenzyme B1), an enzyme cofactor. Thiamine monophosphate may be derived from de novo synthesis or from unphosphorylated thiamine, known as vitamin B1. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step. ; GO: 0009030 thiamin phosphate kinase activity, 0009228 thiamin biosynthetic process.
Probab=99.95 E-value=2.4e-26 Score=204.88 Aligned_cols=307 Identities=20% Similarity=0.270 Sum_probs=225.2
Q ss_pred HHHHHHH---HHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988---6267354366777315756554468871899956888789999998288550168888854346788541
Q gi|254780569|r 27 QIKSAVK---STKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103 (357)
Q Consensus 27 ~i~~~~~---~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA 103 (357)
.|+.+.+ ..+++.+..+||.-|+++..+.. --||.|||-.=-..-.-..+-.-+.+||-.||+|+-||++|||
T Consensus 5 lI~~~~~~~~~~~~~~~~~~~GDDAA~~~~~~~----~~lv~t~D~Lve~~HF~~~~~~Pe~~G~K~~avNlSDlAAmGA 80 (336)
T TIGR01379 5 LIKRLLRRRVLVKDDSVALGIGDDAALVSPPEG----EDLVLTTDTLVEGVHFPPDTTPPEDLGWKAVAVNLSDLAAMGA 80 (336)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCC----CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 666521441114787633247641231157999----6389987023247578867789899999999974999973057
Q ss_pred HHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCE
Q ss_conf 1221100000332-037899999999999998609522143010000013655663368999974154211333455524
Q gi|254780569|r 104 EPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGD 182 (357)
Q Consensus 104 ~Pl~fldyia~~~-l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD 182 (357)
+|.+|+=-++.+. .+.+.++++.+||.+.|++.+|.||||+|-. . +-++.|++|.+++++.+..+++||||
T Consensus 81 ~P~~~~~s~~~P~~~~~~~~~~f~~G~~~~~~~Y~~~LiGGDT~~-------~-~~~~~T~iG~~~~~~~~~RsgAk~GD 152 (336)
T TIGR01379 81 TPKWFLLSLGLPSDLDEAWLEAFYDGLFELAKQYGVDLIGGDTVK-------S-LVVTVTAIGEAPKGRALLRSGAKPGD 152 (336)
T ss_pred CHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC-------E-EEEEEEEEEEECCCCEEECCCCCCCC
T ss_conf 023223100168898889999999999998755398787244002-------1-31434578975689733236787776
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCHH
Q ss_conf 899953865543232034444553115545-6676666630668753972012268888763046322--2234542012
Q gi|254780569|r 183 LILGLPSSGLHSNGFALVRKIISLSQLSWK-DPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIK--ALAHITGGGL 259 (357)
Q Consensus 183 ~IIgl~SsG~HsNGySLvRkil~~~~~~~~-~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~--~~ahITGGGl 259 (357)
.|.....-|-=.=|+.| +......+. ...+.+....+.+.+++|+-=+ ... ..|.+....+ ||.||+ -||
T Consensus 153 ~v~VTG~lG~saaGL~l----l~~G~~~~~~~~~~~~~~~~~~~r~l~P~PR~-~~G-~~l~~~~~a~W~Aa~D~S-DGL 225 (336)
T TIGR01379 153 LVFVTGTLGDSAAGLEL----LLKGKEEGKKKEVDEEDDEALLQRHLRPEPRV-EEG-LALARASLANWVAAIDVS-DGL 225 (336)
T ss_pred EEEEECCCCHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCH-HHH-HHHHHCCHHHEHHHHCCC-HHH
T ss_conf 78995883268999999----97346640256778514799999863899828-999-999745433231212204-779
Q ss_pred HHCCCCCC-CCCEEEEECCCCCCCCHHHHHHHH--HCCCCHHHHHHHHCCCC--CEEEEECHHHHHHHHHHHHHCCCCEE
Q ss_conf 20120025-443047871004898679999999--66989889876524671--16999868989999999997799808
Q gi|254780569|r 260 TENIPRAI-PAHLTASINLNSVEVPQIISWLSK--KAHVKPAEVLRTFNCGI--GMVIIVHPDNKDCIIKKFQENNENII 334 (357)
Q Consensus 260 ~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~--~g~I~~~EM~rtFNmGi--GmvlvV~~e~a~~v~~~l~~~g~~a~ 334 (357)
..-|.++. .++++++|+.++.|.-+.+.-+.+ .-.-.+.|.. .+-|= =+|..++|+..+++...+.+.+++..
T Consensus 226 ~~dL~hIa~AS~vg~~i~~~~LP~~~~~~~~~~~~~~~~~~~~~a--L~gGEDyELvfT~~~~~~~~l~~~~~~~~v~~~ 303 (336)
T TIGR01379 226 ASDLGHIAEASGVGIRIDLDKLPLSSELKEIADTEELGKQPLEWA--LSGGEDYELVFTVPPERREALLDALKALGVPLT 303 (336)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHH--HHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 999999997289629985264787089998863063100279999--872883324551586678899999975587668
Q ss_pred EEEEEEECCCCCCEEEEEEE
Q ss_conf 99999977887200899631
Q gi|254780569|r 335 LIGEVTQRSEKSPPILYQGS 354 (357)
Q Consensus 335 iIG~V~~~~~~~~~V~~~G~ 354 (357)
+||+|+++...+..+..+|+
T Consensus 304 ~IG~v~~g~~~~~~~~~~g~ 323 (336)
T TIGR01379 304 RIGRVTEGEGGSVVLLADGE 323 (336)
T ss_pred EEEEEEECCCEEEEEEECCC
T ss_conf 99999864870599986685
No 20
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=99.94 E-value=1e-26 Score=207.36 Aligned_cols=260 Identities=24% Similarity=0.369 Sum_probs=192.7
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 26735436677731575655446887189995688878999999828855016888885434678854112211000003
Q gi|254780569|r 35 TKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLAT 114 (357)
Q Consensus 35 t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~ 114 (357)
.++-.+.-..|.-|+..+.+ +-.|+.+.||.=-||.=|.-.+ +|+-.|-.|+||+++||+||++++|-+..
T Consensus 33 ~~~~~~~l~~GDDAavI~v~-----~~~lliaadGi~g~l~~~dPw~----aG~csvLVn~~DV~amGG~Pv~~vd~isa 103 (324)
T COG2144 33 FYGAEVILDFGDDAAVIRVG-----DGKLLIAADGIWGKLIDADPWW----AGYCSVLVNVNDVAAMGGEPVGAVDAISA 103 (324)
T ss_pred HCCCCCCCCCCCCEEEEEEC-----CCEEEEECCCCCCCCCCCCCHH----HHCEEEEEEEHHHHHHCCCCEEEEEEEEC
T ss_conf 33555311147834799608-----9679996577643234557233----30206998601335517961488886434
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEE-EEEEECCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 320378999999999999986095221430100000136556633689-9997415421133345552489995386554
Q gi|254780569|r 115 SQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF-AVGAVERKELLSPENVCAGDLILGLPSSGLH 193 (357)
Q Consensus 115 ~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~-~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~H 193 (357)
. +++...++++||.++++..|++++|||| +|++- |+.... +.|++.++.+++..++||||.+|-+.-
T Consensus 104 ~--s~d~~~ei~eglr~~a~kfgvpivGGht--hpd~~----y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d---- 171 (324)
T COG2144 104 K--SEDQAREILEGLRKGARKFGVPIVGGHT--HPDTP----YCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGD---- 171 (324)
T ss_pred C--CHHHHHHHHHHHHHHHHHCCCCEECCCC--CCCCC----CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEC----
T ss_conf 8--7899999999999888854985346715--88877----7644468740236542303689886877999961----
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHCCCCCC-CCCE
Q ss_conf 32320344445531155456676666630668753972012268888763046-322223454201220120025-4430
Q gi|254780569|r 194 SNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTG-KIKALAHITGGGLTENIPRAI-PAHL 271 (357)
Q Consensus 194 sNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~-~i~~~ahITGGGl~~nL~RiL-p~gl 271 (357)
|.-|.-....++++. ++..+ +-+.+.-++++.+.. .++|..+++.||+.+||..+| .+.+
T Consensus 172 -----~~g~~~p~~P~~wDt-------tt~ka------~~~~~~~~e~l~e~a~l~~AgKDvS~gG~iGtl~mlle~S~~ 233 (324)
T COG2144 172 -----LDGKPYPNFPLNWDT-------TTMKA------KEKFRAQLELLREGAKLVKAGKDVSNGGLLGTLLMLLEKSRV 233 (324)
T ss_pred -----CCCCCCCCCCCCCCC-------EEECC------HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf -----478748898855531-------23106------888998999999999987540456675078999999986236
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 478710048986799999996698988987652467116999868989999999997799808999999778
Q gi|254780569|r 272 TASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 (357)
Q Consensus 272 ~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~~ 343 (357)
++.+|++++|.|.-..|.| |--||. |.||++.|+|++++++.+.+.+.|.++.+||+|++++
T Consensus 234 ga~vdl~siP~p~~vd~~~------wlk~yp----g~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie~~ 295 (324)
T COG2144 234 GAGVDLDSIPYPADVDFRQ------WLKRYP----GSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEP 295 (324)
T ss_pred CCEEEECCCCCCCCCCHHH------HHHHCC----CCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 8436523468865554778------998389----9747999688999999999987599658788860376
No 21
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=99.93 E-value=4.7e-24 Score=188.80 Aligned_cols=292 Identities=23% Similarity=0.306 Sum_probs=214.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998862673543667773157565544688718999568887899999982885501688888543467885411221
Q gi|254780569|r 28 IKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLF 107 (357)
Q Consensus 28 i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~ 107 (357)
|+.+.+...+..+..++|.-+++++.+... .||.+||..=-+...-..+. .+.+|+-.+|+|+-||++|||+|.+
T Consensus 9 I~~~~~~~~~~~~~~~~GDDaA~v~~~~~~----~lvvttD~lv~~~hF~~~~~-p~d~G~Ka~a~NlSDlAAMGa~P~~ 83 (317)
T COG0611 9 IKRYFKRRQREDVVLGIGDDAALVDAPEGQ----RLVVTTDMLVEGTHFPPDMT-PEDLGWKALAVNLSDLAAMGARPKA 83 (317)
T ss_pred HHHHHHHCCCCCCCCCCCCCEEEEECCCCC----EEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 999984037655332577764798158886----48999612125355699999-9998789999888899974887653
Q ss_pred HHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 10000033-20378999999999999986095221430100000136556633689999741542113334555248999
Q gi|254780569|r 108 FLDYLATS-QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILG 186 (357)
Q Consensus 108 fldyia~~-~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIg 186 (357)
|+--++.+ .++.+.++++.+||.+.|+..+|.+|||+|-+ +...+++|++|.+++++.+..+++||||.|..
T Consensus 84 ~~lsl~lP~~~d~~~~~~~~~Gi~e~~~~y~~~lIGGDt~~-------~~l~is~t~iG~~~~~~~l~R~gAkpGD~v~v 156 (317)
T COG0611 84 FLLSLGLPPDLDEEWLEALADGIFEAAKKYGVKLIGGDTNR-------GPLSISVTAIGVLPKGRALLRSGAKPGDLVAV 156 (317)
T ss_pred HEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCC-------CCEEEEEEEEEECCCCCCEECCCCCCCCEEEE
T ss_conf 42655289999999999999999999998298086433678-------73589999999617874100469999999999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 53865543232034444553115545667666663066875397201226888876304632222345420122012002
Q gi|254780569|r 187 LPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA 266 (357)
Q Consensus 187 l~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~Ri 266 (357)
....|--..||.|. .+ .........+.+.+++|+.-+. .-+ .+.+ ..+++.+|. -||..-|.++
T Consensus 157 tG~lG~saagl~ll-----~~------~~~~~~~~~l~~r~~~P~Prv~-~g~-~l~~--~a~aa~DiS-DGL~~dL~~i 220 (317)
T COG0611 157 TGTLGRSAAGLELL-----LN------VLGPEDEEELIERHLRPTPRVE-LGL-ALAK--LASAAMDIS-DGLAADLGHI 220 (317)
T ss_pred CCCCCHHHHHHHHH-----HC------CCCCCHHHHHHHHHCCCCCCHH-HHH-HHHH--HHHHHEECC-HHHHHHHHHH
T ss_conf 18876648999999-----61------4675303899998449999756-789-9998--877751230-6599999999
Q ss_pred CC-CCEEEEECCCCCC-CCHHHHHHHHHCCCCHHHHHHHHCCCC--CEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 54-4304787100489-867999999966989889876524671--1699986898999999999779980899999977
Q gi|254780569|r 267 IP-AHLTASINLNSVE-VPQIISWLSKKAHVKPAEVLRTFNCGI--GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342 (357)
Q Consensus 267 Lp-~gl~a~Id~~~~p-~p~iF~~I~~~g~I~~~EM~rtFNmGi--GmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~ 342 (357)
.. ++++++|+.+.+| .+.++++..+.+ ++.+-. .+-|= =+|.++++++.+++...+++.+ ..+||+|+++
T Consensus 221 ~~aS~vg~~I~~~~lp~~~~~~~~~~~~~--~~~~~a--L~gGEDyEL~ft~p~~~~~~~~~~~~~~~--~~~IG~v~~~ 294 (317)
T COG0611 221 ARASGVGIVIDEDLLPLSDAVLEALDELG--DPLEWA--LSGGEDYELVFTVPEENREALLDALRSLG--VTIIGRVTEG 294 (317)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHCCC--CHHHHH--HCCCCCEEEEEEECCHHHHHHHHHHHHCC--CEEEEEEEEC
T ss_conf 99829819998433788677898775447--789998--63687448999837024799999987549--6699999625
Q ss_pred CCCCCEEEEEEEE
Q ss_conf 8872008996315
Q gi|254780569|r 343 SEKSPPILYQGSL 355 (357)
Q Consensus 343 ~~~~~~V~~~G~~ 355 (357)
. + ..+..+|+-
T Consensus 295 ~-g-~~~~~dgk~ 305 (317)
T COG0611 295 E-G-VVVLVDGKE 305 (317)
T ss_pred C-C-EEEEECCCE
T ss_conf 8-7-389841856
No 22
>pfam02769 AIRS_C AIR synthase related protein, C-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The function of the C-terminal domain of AIR synthase is unclear, but the cleft formed between N and C domains is postulated as a sulphate binding site.
Probab=99.88 E-value=7.8e-23 Score=180.25 Aligned_cols=144 Identities=35% Similarity=0.543 Sum_probs=121.0
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 55248999538655432320344445531155456676666630668753972012268888763046322223454201
Q gi|254780569|r 179 CAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGG 258 (357)
Q Consensus 179 ~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGG 258 (357)
||||+||+++|+|+|+|+|+++|+.+.. ....+..+.+++|+++|+. +.+... ..|++|+|||+||
T Consensus 1 k~GD~ii~~g~~g~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~l~~~-~~i~a~~Dis~GG 66 (150)
T pfam02769 1 KPGDVLILLGSSGLGGSGLSLVRKGLEE-----------DGAVPLGDPLLEPTLIYVV--LLLAAL-GLVKAAHDITGGG 66 (150)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCC-----------CCCCCCCCHHHCCHHHHHH--HHHHHC-CCEEEEEECCCCC
T ss_conf 9998999989977289999999731100-----------5998424832062689999--998866-9967998559973
Q ss_pred HHHCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 2201200254-430478710048986799999996698988987652467116999868989999999997799808999
Q gi|254780569|r 259 LTENIPRAIP-AHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIG 337 (357)
Q Consensus 259 l~~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG 337 (357)
|..++.||++ ++++++|+.++ +|+|.|+ +++.||+.+||||.++ ++|+|++++++++.+++++.++++||
T Consensus 67 L~~~l~e~~~~~~~g~~i~~~~---~~~~~~~-----~~~~e~l~~e~~G~~~-v~v~~~~~~~v~~~~~~~~~~~~~IG 137 (150)
T pfam02769 67 LAGALAEMAPASGVGAEIDLDK---VPIFDEL-----LLPLEMLFSENQGRGL-VVVVPEEAEAVLAILEEEGLPAAVIG 137 (150)
T ss_pred HHHHHHHHHHCCCEEEEEECCC---CCCCCCC-----CCHHHHCCCCCCCEEE-EEECHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999987633256168975677---8603555-----6545512324786389-99868899999999998798949999
Q ss_pred EEEECCCC
Q ss_conf 99977887
Q gi|254780569|r 338 EVTQRSEK 345 (357)
Q Consensus 338 ~V~~~~~~ 345 (357)
+|++++..
T Consensus 138 ~v~~~~~~ 145 (150)
T pfam02769 138 EVTAGGGL 145 (150)
T ss_pred EEEECCCE
T ss_conf 99908979
No 23
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.87 E-value=1.2e-21 Score=171.96 Aligned_cols=281 Identities=20% Similarity=0.332 Sum_probs=201.6
Q ss_pred CCCCCCCCCCCCEEEEECCCC--------CCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 673543667773157565544--------688718999568887899999982885501688888543467885411221
Q gi|254780569|r 36 KRAGTIGEIGGFGGLFDLKKA--------GFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLF 107 (357)
Q Consensus 36 ~~~~v~~~ig~f~~~~~l~~~--------~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~ 107 (357)
..++|+.+.|.-||.++++.. ...+|.-+.--.|.-| .|.=-+-|++||||+|++
T Consensus 74 ~~~~vi~g~gdnAgvvdi~d~~~v~fKvESHNHPSaIePy~GAAT-----------------GvGGiIRDv~smGArPiA 136 (743)
T COG0046 74 TGEYVLSGPGDNAGVVDIGDGWAVVFKVESHNHPSAIEPYQGAAT-----------------GVGGIIRDVLSMGARPIA 136 (743)
T ss_pred CCCEEEECCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCCC-----------------CCCCEEECCCCCCCEEEE
T ss_conf 887178752677635886796799998546789886688797304-----------------657656224346760001
Q ss_pred HHHHHCCCCHHH----HHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 100000332037----8999999999999986095221430100000136556633689999741542113334555248
Q gi|254780569|r 108 FLDYLATSQLNP----DQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDL 183 (357)
Q Consensus 108 fldyia~~~l~~----~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~ 183 (357)
.||-+.+|.++. .++..++.||+..-.+.|+|-+|||+.-.|. |..+.+ +..+|+|+++++++..+...+|||.
T Consensus 137 ~l~~l~fG~~~~~~~~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~-y~~npL-vna~~vG~i~~~~i~~~~a~~~G~~ 214 (743)
T COG0046 137 LLDSLRFGIPDIEKTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDES-YVGNPL-VNAGCVGLIRKEHIVKGEAIGPGDK 214 (743)
T ss_pred EECCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCC-CCCCCE-EEEEEEECCCHHHEEECCCCCCCCE
T ss_conf 01021247999730567874006403323763465544248997444-378960-7878862011444110467899987
Q ss_pred EEEECC----CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 999538----6554323203444455311554566766666306687539720122688887630463222234542012
Q gi|254780569|r 184 ILGLPS----SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGL 259 (357)
Q Consensus 184 IIgl~S----sG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl 259 (357)
||-+.+ .|+|. -|.+-+-+.++.... +. ..-..|+.+++ |.-...++++.+ ...|++|.|.-+|||
T Consensus 215 li~~Gg~TgrDGigG--at~aS~~~~~~~~e~-dr----~aVQvGdPf~E--k~l~ea~le~~~-~~~I~~i~DlGAgGL 284 (743)
T COG0046 215 LILLGGKTGRDGIGG--ATFASMELGEESEEE-DR----PSVQVGDPFME--KRLQEAILECVQ-TGLIKGIQDLGAGGL 284 (743)
T ss_pred EEEECCCCCCCCCCC--HHHHHHHHCCCHHHH-CC----CCCCCCCHHHH--HHHHHHHHHHHH-CCCEEEEECCCCCHH
T ss_conf 999747756566573--323104427451553-47----75012785888--999999999873-197688741687313
Q ss_pred HHCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 201200254-4304787100489867999999966989889876524671169998689899999999977998089999
Q gi|254780569|r 260 TENIPRAIP-AHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGE 338 (357)
Q Consensus 260 ~~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~ 338 (357)
...++++.. .+++++++++..|. ++-++++.||+=.= -==.|+++|.|++.+++.+++++.+.++.+||+
T Consensus 285 s~A~~Ela~~gg~G~~i~Ld~VP~--------rE~gMsp~Ei~~SE-SQERMllvv~p~~~e~~~~i~~k~~l~~aVVG~ 355 (743)
T COG0046 285 SCAISELAAKGGLGAEIDLDKVPL--------REPGMSPYEIWLSE-SQERMLLVVAPEDVEEFLEICEKERLPAAVVGE 355 (743)
T ss_pred HHHHHHHHHCCCCEEEEEHHCCCC--------CCCCCCHHHHHHHC-CCHHEEEEECCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 223899973369706998000834--------67999889988731-101058998513499999999971898079999
Q ss_pred EEECCCCCCEEEEEEEEC
Q ss_conf 997788720089963151
Q gi|254780569|r 339 VTQRSEKSPPILYQGSLI 356 (357)
Q Consensus 339 V~~~~~~~~~V~~~G~~~ 356 (357)
|++. +..++.|+|..+
T Consensus 356 vT~~--~~~~~~~~ge~v 371 (743)
T COG0046 356 VTDE--PRLVVDWKGEPV 371 (743)
T ss_pred EECC--CEEEEEECCCEE
T ss_conf 9437--659999789678
No 24
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.86 E-value=4.2e-21 Score=168.14 Aligned_cols=241 Identities=22% Similarity=0.381 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHH------------HHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCE
Q ss_conf 8543467885411221100000332037------------8999999999999986095221430100000136556633
Q gi|254780569|r 92 AMCVNDILTHGAEPLFFLDYLATSQLNP------------DQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDL 159 (357)
Q Consensus 92 am~vNDi~~~GA~Pl~fldyia~~~l~~------------~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dl 159 (357)
.=.+.|++||||+|++.+|.+.+|.++. .++..+++|+++.+.+.|+|.+||++.-.+. |..+.. +
T Consensus 52 GGiiRDi~~~GA~pia~~d~l~fG~~~~~~~~~~~~~~~~~i~~~vv~GisdyGN~~GvP~v~G~~~f~~~-y~~nPl-v 129 (313)
T cd02203 52 GGIIRDILSMGARPIALLDGLRFGDLDIPGYEPKGKLSPRRILDGVVAGISDYGNCIGIPTVGGEVRFDPS-YYGNPL-V 129 (313)
T ss_pred CCEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCEEEEEEEECCC-CCCCCE-E
T ss_conf 63002545668667776546520699887655545668989987751356653865576235579998665-467843-7
Q ss_pred EEEEEEEECCCCCCCCCCCCCCEEEEEECC----CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHH
Q ss_conf 689999741542113334555248999538----6554323203444455311554566766666306687539720122
Q gi|254780569|r 160 AGFAVGAVERKELLSPENVCAGDLILGLPS----SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235 (357)
Q Consensus 160 ag~~vG~v~k~~ii~~~~i~~GD~IIgl~S----sG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~ 235 (357)
...|+|++++++++.....++||.||-+.+ +|+|.--|| -..+.+...... ...-..++..++ |.-.
T Consensus 130 ~~~~vG~v~~~~~~~~~~~~~G~~iv~vGg~tgrdGigGasfs--S~~~~~~~~~~~-----~~aVQ~gdP~~e--k~l~ 200 (313)
T cd02203 130 NVGCVGIVPKDHIVKSKAPGPGDLVVLVGGRTGRDGIGGATFS--SKELSENSSELD-----RPAVQVGDPFME--KKLQ 200 (313)
T ss_pred EEEEEEEEEHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEE--EHHHCCCCCCCC-----CCCCCCCCHHHH--HHHH
T ss_conf 8754775337770256689999889999078666652210354--032046643346-----554322866888--8999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCC-CCEEEE
Q ss_conf 68888763046322223454201220120025-4430478710048986799999996698988987652467-116999
Q gi|254780569|r 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG-IGMVII 313 (357)
Q Consensus 236 ~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmG-iGmvlv 313 (357)
..+++++++ ..|.++.|...|||...+.++. ..+++++||+++.|... -++++.|.+ |+-- =.|+++
T Consensus 201 e~~le~~~~-~li~~ihD~GaGGl~~a~~Ema~~~~~G~~i~Ld~vp~~~--------~~m~p~Eil--~SESQERm~~~ 269 (313)
T cd02203 201 EAILEARET-GLIVGIQDLGAGGLSSAVSEMAAKGGLGAEIDLDKVPLRE--------PGMSPWEIW--ISESQERMLLV 269 (313)
T ss_pred HHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC--------CCCCHHHEE--EECCHHCEEEE
T ss_conf 999988854-9868888658850654237776148973999903470577--------999864713--30561108999
Q ss_pred ECHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 8689899999999977998089999997788720089963151
Q gi|254780569|r 314 VHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLI 356 (357)
Q Consensus 314 V~~e~a~~v~~~l~~~g~~a~iIG~V~~~~~~~~~V~~~G~~~ 356 (357)
|+|++.+++.+++++++.++.+||+|++ ++.-+|.++|+.+
T Consensus 270 v~~~~~~~~~~i~~k~~~~~~vIG~vt~--~~~~~v~~~~e~v 310 (313)
T cd02203 270 VPPEDLEEFLAICKKEDLEAAVIGEVTD--DGRLRLYYKGEVV 310 (313)
T ss_pred ECHHHHHHHHHHHHHCCCCEEEEEEEEC--CCEEEEEECCEEE
T ss_conf 8864699999999987999799999936--9869999999898
No 25
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.79 E-value=2.2e-18 Score=149.08 Aligned_cols=277 Identities=19% Similarity=0.360 Sum_probs=191.4
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 673543667773157565544688718999568887899999982885-------5016888885434678854112211
Q gi|254780569|r 36 KRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKN-------DTIGIDLVAMCVNDILTHGAEPLFF 108 (357)
Q Consensus 36 ~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~-------~~ig~Dlvam~vNDi~~~GA~Pl~f 108 (357)
..+.|+.+.|.=||+.+++.. ..++-... ...| .+. --.|.=.+-|+++|||+|++.
T Consensus 63 ~~~~vl~~~~dnAgvv~~~~~----~~~~fK~E-----------THNHPsaIePf~GA-aTGvGG~iRD~~~~GA~Pia~ 126 (736)
T PRK01213 63 KGPRVLQGPGENAGVVDIGDG----QAVVFKIE-----------SHNHPSAVEPYQGA-ATGVGGILRDIFTMGARPIAL 126 (736)
T ss_pred CCCCEEEECCCCEEEEEECCC----EEEEEEEC-----------CCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCEEEC
T ss_conf 899567854886059995798----69999978-----------88999877887961-016687001787668741552
Q ss_pred HHHHCCCCHHHH----HHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 000003320378----9999999999999860952214301000001365566336899997415421133345552489
Q gi|254780569|r 109 LDYLATSQLNPD----QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI 184 (357)
Q Consensus 109 ldyia~~~l~~~----~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~I 184 (357)
+|.+-+|.++.. ++..++.|++..-.+.|+|.++|||--.|+ |..+.. +..+|+|+++++++......++||.|
T Consensus 127 ~d~l~fG~~~~~~~~~i~~gvv~G~s~YGN~~G~Ptv~G~~~F~~~-y~~npl-v~a~~vG~v~~~~i~~~~~~~~G~~v 204 (736)
T PRK01213 127 LNSLRFGELDHPKTRYLVEGVVAGIGGYGNCVGVPTVGGEVYFDPS-YNGNPL-VNAMCVGLVEHDDIVKGKASGVGNPV 204 (736)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCC-CCCCEE-EEEEEEEEEEHHHCEECCCCCCCCEE
T ss_conf 4555568989863534432124432105744465753338897156-477623-67557887415443025689999889
Q ss_pred EEECC----CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 99538----65543232034444553115545667666663066875397201226888876304632222345420122
Q gi|254780569|r 185 LGLPS----SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLT 260 (357)
Q Consensus 185 Igl~S----sG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~ 260 (357)
|-+.+ .|+|. =|.+-+.+.+... .+. ..-..|+..++ |.-.+.++++.+ ...|.+|.|.-.|||.
T Consensus 205 v~lGg~tgrdGigG--as~sS~~~~~~s~--~~~----~aVQ~GdP~~e--k~li~ac~el~~-~~~I~~i~D~GAGGls 273 (736)
T PRK01213 205 VYVGAKTGRDGIGG--ATFASAELSEESE--EKR----PAVQVGDPFME--KLLIEACLELFA-TGAVVGIQDMGAAGLT 273 (736)
T ss_pred EEECCCCCCCCCCC--HHHHHHHCCCCCH--HHC----CCEECCCHHHH--HHHHHHHHHHHH-CCCEEEEEECCCCHHH
T ss_conf 99347555456775--0121233245554--435----66012886788--899999998740-6987899856996177
Q ss_pred HCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHH----HHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEE
Q ss_conf 01200254-430478710048986799999996698988987----6524671169998689899999999977998089
Q gi|254780569|r 261 ENIPRAIP-AHLTASINLNSVEVPQIISWLSKKAHVKPAEVL----RTFNCGIGMVIIVHPDNKDCIIKKFQENNENIIL 335 (357)
Q Consensus 261 ~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~----rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~i 335 (357)
..++++.. .+++++||++..|.. + -++++.|++ +- .|+++|+|++.+++.+++++.+.++.+
T Consensus 274 ~a~~Ela~~~g~G~~i~Ld~Vpl~-------~-~gmsp~EI~~SESQE-----Rm~l~v~p~~~~~~~~i~~re~~~~~v 340 (736)
T PRK01213 274 CSSSEMAAKGGLGIELDLDKVPLR-------E-EGMTPYEIMLSESQE-----RMLLVVKPGKEEEVLAIFEKWDLDAAV 340 (736)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCC-------C-CCCCHHHHHHHHHHH-----HEEEEECCHHHHHHHHHHHHCCCCEEE
T ss_conf 628998742797899991247289-------9-998889977761343-----159998834689999999885998899
Q ss_pred EEEEEECCCCCCEEEEEEEEC
Q ss_conf 999997788720089963151
Q gi|254780569|r 336 IGEVTQRSEKSPPILYQGSLI 356 (357)
Q Consensus 336 IG~V~~~~~~~~~V~~~G~~~ 356 (357)
||+|++. +.-++.++|+.+
T Consensus 341 VG~vt~~--~~l~v~~~g~~v 359 (736)
T PRK01213 341 IGEVTDT--GRLRVYHKGEVV 359 (736)
T ss_pred EEEEECC--CEEEEEECCCEE
T ss_conf 9999338--829999899779
No 26
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=99.66 E-value=3.3e-16 Score=133.78 Aligned_cols=264 Identities=21% Similarity=0.293 Sum_probs=189.0
Q ss_pred CCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHH--HHHHHH-HHHHHHHHHHHHHHHHHHC--CCCH
Q ss_conf 6777315756554468871899956888789999998288550168--888854-3467885411221100000--3320
Q gi|254780569|r 43 EIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGI--DLVAMC-VNDILTHGAEPLFFLDYLA--TSQL 117 (357)
Q Consensus 43 ~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~--Dlvam~-vNDi~~~GA~Pl~fldyia--~~~l 117 (357)
..+.-++.|++++ ...++++||= .+...+.-++ -.+|-| +-|+.+||++|+--+.-.. ...+
T Consensus 47 ~~~dda~vy~ig~----g~~iIsT~df---------~mpivddp~dfG~IaAtNaIsDv~amgg~pi~AiAI~g~~~~~l 113 (346)
T COG0709 47 ETGDDAAVYDLGN----GHSIISTTDF---------FMPIVDDPFDFGRIAATNAISDVFAMGGKPIMAIAILGFPNDLL 113 (346)
T ss_pred CCCCCCEEEEECC----CEEEEEECCE---------EEECCCCCCHHHHHHHCCCCCCHHHCCCCCHHHHHHCCCCCCCC
T ss_conf 5467621688469----8089983440---------22421582322021111210346650896122221117842225
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCC--CCC
Q ss_conf 378999999999999986095221430100000136556633689999741542113334555248999538655--432
Q gi|254780569|r 118 NPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGL--HSN 195 (357)
Q Consensus 118 ~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~--HsN 195 (357)
+++++++|++|-...||+++.++.|||+-+-| +..|-++ ++|++..+++...+++++|+.|+-..--|+ -++
T Consensus 114 ~~~i~~ei~~gg~~~~rea~i~lagGhsIdap----EP~fGla--v~G~~~~~k~~~n~~a~~G~~lilTKPlG~gil~t 187 (346)
T COG0709 114 DKEIAQEVIEGGRDACREAGIALAGGHSIDAP----EPIFGLA--VTGIVPTGKVKRNSTAKAGCKLILTKPLGIGILTT 187 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCEE--EECCCCHHHHCCCCCCCCCCEEEEECCCCCCEEHH
T ss_conf 88999999975478998718422488323788----8430415--64043566612256667786899914755523214
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCC-CCEEEE
Q ss_conf 3203444455311554566766666306687539720122688887630463222234542012201200254-430478
Q gi|254780569|r 196 GFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIP-AHLTAS 274 (357)
Q Consensus 196 GySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiLp-~gl~a~ 274 (357)
.| ....+ ..+...-.-+.+.+|.++ .-.+.. ...|++|.|+||.||.+++.+|.. ++++++
T Consensus 188 a~-------k~~~L------~~e~~~~ale~M~~lN~~----~~~~~~-~~gv~A~TDVTGfGLlghl~E~ae~s~v~~~ 249 (346)
T COG0709 188 AE-------KKGLL------KEEHKGLALENMCTLNKI----GAQFAP-DFGVAAMTDVTGFGLLGHLKEMAEGAGVDAR 249 (346)
T ss_pred HH-------HHHCC------CHHHHHHHHHHHHHHHHH----HHHHCC-CCCCCEEECCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 54-------44115------888999999998633477----897376-6785024326574089999999843598579
Q ss_pred ECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC-----------------------CCCEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 71004898679999999669898898765246-----------------------7116999868989999999997799
Q gi|254780569|r 275 INLNSVEVPQIISWLSKKAHVKPAEVLRTFNC-----------------------GIGMVIIVHPDNKDCIIKKFQENNE 331 (357)
Q Consensus 275 Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNm-----------------------GiGmvlvV~~e~a~~v~~~l~~~g~ 331 (357)
+..+.+|.++.-++..+.+-++.. -+|+|+- | |+++.|.++...++..+.++.+.
T Consensus 250 lf~~~ip~l~~~e~~~e~g~iP~g-t~~n~~s~~~~~~~~l~e~~~~lL~dpqtsg-glliav~~~~~~~~~~i~~e~~~ 327 (346)
T COG0709 250 LFDSPIPFLDGVEFYIENGIIPGG-TARNFGSYGIFAGKDLPEEQKLLLCDPQTSG-GLLIAVVPEGKGEGLEIAPELGI 327 (346)
T ss_pred EEECCCCCCHHHHHHHHCCCCCCC-CCCCHHHHHHHCCCCCCHHHHHHHCCCCCCC-CEEEEEECCCCCCHHEECCHHCC
T ss_conf 972667871779999975887685-4433267888603455189998704887788-66999804665332023413126
Q ss_pred CEEEEEEEEECCCC
Q ss_conf 80899999977887
Q gi|254780569|r 332 NIILIGEVTQRSEK 345 (357)
Q Consensus 332 ~a~iIG~V~~~~~~ 345 (357)
+.+.||++.+....
T Consensus 328 ~~~~i~~l~~k~~~ 341 (346)
T COG0709 328 QLIIIGELVAKQRA 341 (346)
T ss_pred CEEHHHHHHHHCCC
T ss_conf 41045668874267
No 27
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.65 E-value=5.2e-15 Score=125.45 Aligned_cols=222 Identities=21% Similarity=0.264 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCC-----
Q ss_conf 6888885434678854--11221100000332037---8999999999999986095221430100000136556-----
Q gi|254780569|r 87 GIDLVAMCVNDILTHG--AEPLFFLDYLATSQLNP---DQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD----- 156 (357)
Q Consensus 87 g~Dlvam~vNDi~~~G--A~Pl~fldyia~~~l~~---~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~----- 156 (357)
+.-.|+-++-|++|+| |+|++.+|-+-++..++ .++.+.++||+++|+..++++++|-. .+|....
T Consensus 22 a~~av~Ea~RNi~~~G~~a~pia~~dn~~~~~~~p~~~~~l~~av~Gi~d~c~~l~iPvvsGnv----Slyn~~~~~~~~ 97 (272)
T cd02193 22 AATGVGGAIRDIAATGIDAKPIALSANWMASAGHPGEDAILYDAVKGVAELCNQLGLPIPVGKD----RMSMKTRWQEGN 97 (272)
T ss_pred HHHHHHHHHHCCHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCC----CEECEEECCCCC
T ss_conf 9999999997605108887225898503668979318899999999999998862988505623----130004425788
Q ss_pred --------CCEEEEEEEEECCCCCCCCCCCCCCEEEEEEC--C--CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf --------63368999974154211333455524899953--8--65543232034444553115545667666663066
Q gi|254780569|r 157 --------YDLAGFAVGAVERKELLSPENVCAGDLILGLP--S--SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLG 224 (357)
Q Consensus 157 --------~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~--S--sG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~ 224 (357)
--+.-.++|.++..+.......++||.|+-+. . .+++ |-++........... ...+...+ +.
T Consensus 98 ~~~~~~~~Pt~~i~~vG~i~d~~~~~~~~~~~g~~i~liG~~~~~~~lg--Gs~~~~~~~~~~~~g--~~~~~~~d--~~ 171 (272)
T cd02193 98 EQREMTHPPSLVISAFGRVRDDRHTLPQLSTEGNALLLIGGGKGHNGLG--GTALASVALSYRQLG--DKSAQVRD--PA 171 (272)
T ss_pred CCEEEEEEEEEEEEEEECCCCCCEECCCCCCCCCEEEEEECCCCCCCCC--HHHHHHHHHCCCCCC--CCCCCCCC--HH
T ss_conf 3016887124776675203564044477778999899991578878753--268999874024379--99998689--99
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCC-----HHHHHHHHHCCCCHH
Q ss_conf 8753972012268888763046322223454201220120025-4430478710048986-----799999996698988
Q gi|254780569|r 225 ETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAI-PAHLTASINLNSVEVP-----QIISWLSKKAHVKPA 298 (357)
Q Consensus 225 e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p-----~iF~~I~~~g~I~~~ 298 (357)
.+ -++ .+.+++++++ ..|++++|+..|||.-.|.+|. ..++++.||++..|.- +...|+-+
T Consensus 172 ~e----k~~-~~~~~~~i~~-glI~s~HDvS~GGL~vaLaEma~~g~~G~~idL~~v~~~~~~~~~~~~lfsE------- 238 (272)
T cd02193 172 QE----KGF-YEAMQALVAA-GKLLAWHDRGAGGLLVALAELVFAGHCGVQVDLAALGDDEPDMEPLEIALFE------- 238 (272)
T ss_pred HH----HHH-HHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHC-------
T ss_conf 99----999-9999999983-9944886658860888899998547964999805675889998789998716-------
Q ss_pred HHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9876524671169998689899999999977998089999
Q gi|254780569|r 299 EVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGE 338 (357)
Q Consensus 299 EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~ 338 (357)
---+|++.|+|++.+++.++++.++..+.+||+
T Consensus 239 -------sq~R~vv~V~~e~~~~~~~i~~~~~~~~~viG~ 271 (272)
T cd02193 239 -------SQERGVIQVRAEDRDAVEEAQYGLADCVHVLGQ 271 (272)
T ss_pred -------HHHCEEEEECHHHHHHHHHHHCCCCCCEEEECC
T ss_conf -------735829998676599999996168983488257
No 28
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II; InterPro: IPR010074 Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most bacteria. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=99.65 E-value=7.7e-15 Score=124.25 Aligned_cols=262 Identities=21% Similarity=0.287 Sum_probs=174.2
Q ss_pred CCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HH---H
Q ss_conf 7315756554468871899956888789999998288550168888854346788541122110000033203-78---9
Q gi|254780569|r 46 GFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLN-PD---Q 121 (357)
Q Consensus 46 ~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~-~~---~ 121 (357)
+-|++.++...+..+--|+.++|+==. .-.++-|. =|.-.||=++=-|+|+||+||+++|.|-+|... || +
T Consensus 448 ~DAAVlr~~~~~~~~~glA~t~D~NPr----~~~~dPy~-Ga~~~vaEa~RNLa~vGA~PLa~vDcLNFGNPErPEvywQ 522 (763)
T TIGR01736 448 ADAAVLRIKETGKLDKGLALTADCNPR----YVYLDPYA-GAAAAVAEAYRNLAAVGAEPLAIVDCLNFGNPERPEVYWQ 522 (763)
T ss_pred CCEEEEEECCCCCCCCEEEEEECCCCC----CEEECHHH-HHHHHHHHHHHCEEEECCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 541346640568775278997078766----03316035-5889777431125640875488884056898887036789
Q ss_pred HHHHHHHHHHHHHHCCCEECCC------CHHH----CCCCCCCCCCCEEEEEEEEEC-CCCCCC-CCCCCCCEEEEEECC
Q ss_conf 9999999999998609522143------0100----000136556633689999741-542113-334555248999538
Q gi|254780569|r 122 ATSIIKGIAAGCCQAGCALIGG------ETAE----MPGLYHDRDYDLAGFAVGAVE-RKELLS-PENVCAGDLILGLPS 189 (357)
Q Consensus 122 ~~~ii~gi~~~c~~~g~~liGG------ETAe----mP~vy~~~~~Dlag~~vG~v~-k~~ii~-~~~i~~GD~IIgl~S 189 (357)
+.+-++||+++||..++|+||| ||-+ .| +++... | .+||+++ -+++.+ ....++||.|+-+.-
T Consensus 523 f~~~v~Gl~daa~~l~~PVVgGNVSLYNE~~~~~~~~~-i~PTP~--i--~~VG~~~Dv~~~~~~~~~~~~Gd~~~l~Ge 597 (763)
T TIGR01736 523 FVEAVKGLGDAARALGTPVVGGNVSLYNETNGEDAKVP-IAPTPT--I--GMVGLVEDVEKLLTSLNFKKEGDAIYLIGE 597 (763)
T ss_pred HHHHHHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCC-CCCCCE--E--EEEEEECCCCCCCCCCHHHHCCCEEEEECC
T ss_conf 99999999999986388988211000231037872435-378515--8--999884274212564205447976999314
Q ss_pred CC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-
Q ss_conf 65-5432320344445531155456676666630668753972012268888763046322223454201220120025-
Q gi|254780569|r 190 SG-LHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAI- 267 (357)
Q Consensus 190 sG-~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiL- 267 (357)
+- -+= |=|.--+.+... .....|.-+ +..+ +-+...+++++++ +.|.+.+||..|||+=.|.+|.
T Consensus 598 t~~~El-GGS~Y~~~~~g~---~~G~~P~vD---l~~e-----~~~~d~v~~~i~~-g~v~~ahDvS~GGLAvaLAem~~ 664 (763)
T TIGR01736 598 TKKDEL-GGSEYLKVVHGI---VSGQVPAVD---LEEE-----KELADAVREAIRE-GLVSAAHDVSRGGLAVALAEMAI 664 (763)
T ss_pred CCCCCC-CHHHHHHHHCCC---CCCCCCCCC---HHHH-----HHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHHH
T ss_conf 323666-476787777884---478688878---6888-----9999999999740-68205544335238999999997
Q ss_pred CCCEEEEECCCCCCCC--HHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHH-HHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 4430478710048986--799999996698988987652467116999868989-999999997799808999999778
Q gi|254780569|r 268 PAHLTASINLNSVEVP--QIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNK-DCIIKKFQENNENIILIGEVTQRS 343 (357)
Q Consensus 268 p~gl~a~Id~~~~p~p--~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a-~~v~~~l~~~g~~a~iIG~V~~~~ 343 (357)
.+|+++.|+.+..+-. -.+..|-.+.+ | ++++.|+++++ .+.+..+...+.++.+||+.+.+.
T Consensus 665 ~~G~Ga~~~~~~~~~~~~r~~~~LFSEs~------------g-R~iv~~~~~~~v~~~~~ff~~~~~~a~~~G~~~~~~ 730 (763)
T TIGR01736 665 ASGIGAEVDIDEIASETARADELLFSESN------------G-RAIVAVREEKAVEEAVKFFESKGVPAKVIGEKTGGE 730 (763)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHCCCCC------------C-CEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf 44862599725788500002688706778------------8-669995797999999987312365067774786486
No 29
>TIGR00476 selD selenide, water dikinase; InterPro: IPR004536 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide, water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring above the trusted cut-off but not aligning to the beginning of the HMM is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence.; GO: 0004756 selenide water dikinase activity, 0005524 ATP binding.
Probab=99.65 E-value=4.3e-16 Score=133.01 Aligned_cols=280 Identities=19% Similarity=0.243 Sum_probs=165.1
Q ss_pred CCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHH----H
Q ss_conf 731575655446887189995688878999999828855016888885434678854112211000--0033203----7
Q gi|254780569|r 46 GFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDY--LATSQLN----P 119 (357)
Q Consensus 46 ~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldy--ia~~~l~----~ 119 (357)
+-|++|+..+ +. ++|.+||=.= -.-=+-|. -|.=.-|=..-||++||..|+--+-. ....||+ +
T Consensus 58 DdA~v~~~~n-G~---~~v~T~D~~~-----PiVddPY~-~G~IAaaN~~SDiYAMG~~~i~~~l~~~~~~~kL~drer~ 127 (372)
T TIGR00476 58 DDAAVYERHN-GL---SLVKTVDVIT-----PIVDDPYL-FGRIAAANALSDIYAMGGLPIVALLILVGVSNKLSDRERI 127 (372)
T ss_pred CCCEEEECCC-CE---EEEEEEEEEE-----EEECCHHH-HHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCC
T ss_conf 4311353179-88---9999633898-----32568355-4489987567777743773210143330356668754442
Q ss_pred HHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 89999999999999860952214301000001365566336899997415421133345552489995386554323203
Q gi|254780569|r 120 DQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFAL 199 (357)
Q Consensus 120 ~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySL 199 (357)
+++.+|++|..++||+++.+|+||||-.=|- ..| -|.+.|+++.++.+..+++++||++|-..-=|... -.++
T Consensus 128 ~v~Rev~~G~~d~~reakt~~~GGhtil~pw----p~~--Gg~vtgv~~~~~~~~~~~a~~G~~L~LTKPLGtqv-~~~~ 200 (372)
T TIGR00476 128 EVVREVIKGFKDACREAKTALVGGHTILNPW----PVF--GGAVTGVCPEEEVITKSGAQVGDVLILTKPLGTQV-LVAV 200 (372)
T ss_pred CHHHHHHHHHHHHHHHCCEEEECCEEECCCC----CCC--CCEEEEECCCCCEECCCCCCCCCEEEEECCCHHHH-HHHH
T ss_conf 0106877658888876890797362112762----000--54063102788475258874241678517516899-9987
Q ss_pred HHH--HHHH-HCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCCCHHHHCCCCCC-CCC
Q ss_conf 444--4553-115545667666663066875397201226888876-----3046322223454201220120025-443
Q gi|254780569|r 200 VRK--IISL-SQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKIL-----RKTGKIKALAHITGGGLTENIPRAI-PAH 270 (357)
Q Consensus 200 vRk--il~~-~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll-----~~~~~i~~~ahITGGGl~~nL~RiL-p~g 270 (357)
-|+ ++++ +++...=.. .+.+--..++...=+|+=--.+..+. ......||+.||||.||.++...|. .++
T Consensus 201 ~~~~~~~~~~nkik~~i~~-ee~~~~~~~A~e~M~~~Nryalkal~~A~~~~~~~~~~A~TDvTGFGlLGH~~~~ak~~~ 279 (372)
T TIGR00476 201 EKKLDIFKDLNKIKLSILK-EERELIINEAIENMARLNRYALKALRKAAELMNSKDAKALTDVTGFGLLGHAQEMAKNSN 279 (372)
T ss_pred HHCCCCHHCCCCEEEEEEC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6311200110414678607-527889989999999888999999999887664418715311456545688999874078
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEE-CHHHHHHHHHHHHHC----CCCEEEEEEEEECC
Q ss_conf 04787100489867999999966989889876524671169998-689899999999977----99808999999778
Q gi|254780569|r 271 LTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIV-HPDNKDCIIKKFQEN----NENIILIGEVTQRS 343 (357)
Q Consensus 271 l~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV-~~e~a~~v~~~l~~~----g~~a~iIG~V~~~~ 343 (357)
..++|+.+..|..+-..-+.+....+.-.|+.+--.|-|.++.. +.+..+.+.+..++. ...+|++++|.++.
T Consensus 280 ~~~~~~~e~lP~l~~~~~~~k~~~~~~G~~~g~~~~~~G~L~~~~~~~~~~ll~~~~~S~~y~~~~~~~~~~~v~~G~ 357 (372)
T TIGR00476 280 VEARIVYEKLPVLKKVEELSKLKGVPLGAIEGLETAGSGLLLSELPREKAALLCDPVKSGGYLFEVQKEVKEKVEKGT 357 (372)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 669999530887354578898632433121354212674221357078986426101051357766688851110101
No 30
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.9e-14 Score=118.06 Aligned_cols=306 Identities=19% Similarity=0.279 Sum_probs=191.1
Q ss_pred CCHHHHCCCHH--------HHHHHH-HHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 88889088989--------999999-999999886267354366777315756554468871899956888789999998
Q gi|254780569|r 9 LTYGQAGVNIE--------AGNRTV-TQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIE 79 (357)
Q Consensus 9 ~tY~~aGVdi~--------~~~~~v-~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~ 79 (357)
+.|-.|||.-- .+|.+| +.|..++.+| ..-|-+.--.-||..++.+ -++|.+.||.-+.|.
T Consensus 67 l~~p~sgV~mGe~GvGSRG~GDf~VH~kl~e~~~~t-ga~vs~ee~DDaGvvr~~~-----~yivvaiDGiHSRLS---- 136 (449)
T COG1973 67 LGYPKSGVGMGEMGVGSRGEGDFFVHEKLAELAGKT-GAVVSPEELDDAGVVRIEN-----DYIVVAIDGIHSRLS---- 136 (449)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCCCHHHCCCCCEEEECC-----CEEEEEECCHHHHHH----
T ss_conf 268867775302466767666334999999997304-6406887847777277358-----669999413343311----
Q ss_pred HCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCC-CCCCCCC
Q ss_conf 288550-16888885434678854112211000003-32037899999999999998609522143010000-0136556
Q gi|254780569|r 80 TGKNDT-IGIDLVAMCVNDILTHGAEPLFFLDYLAT-SQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMP-GLYHDRD 156 (357)
Q Consensus 80 ~~~~~~-ig~Dlvam~vNDi~~~GA~Pl~fldyia~-~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP-~vy~~~~ 156 (357)
.|-- .|.-.--...-|+.+|||+|++++.-+-. ..-|.-.+-....|+..-|+..++||++|-|--.. +++-...
T Consensus 137 --efPFLaGFhvtRAalRDv~vmGa~p~alisDiHlaDDgDVgklfDf~AGvtaVsea~~vPl~aGSTLRiGGDmVlGdR 214 (449)
T COG1973 137 --EFPFLAGFHVTRAALRDVYVMGARPVALISDIHLADDGDVGKLFDFTAGVTAVSEAVGVPLLAGSTLRIGGDMVLGDR 214 (449)
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCEEECCEEEEECH
T ss_conf --275122468779999889872764303356556336754656301221265788874885433652577472676040
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHH
Q ss_conf 63368999974154211333455524899953865543232034444553115545667666663066875397201226
Q gi|254780569|r 157 YDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVS 236 (357)
Q Consensus 157 ~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~ 236 (357)
.-=+--|||+.+ +++-...+++|||+|+-..-+|=. +..-..+- ..+.| +-++-|. .-+.+
T Consensus 215 l~~~Vg~iGi~k-~~~t~Rr~~~~Gd~IlmTEGaGGG----Ti~TTAiY---~Gm~D---------Vv~ETln--v~fi~ 275 (449)
T COG1973 215 LVGAVGAIGISK-SELTPRRRAEPGDVILMTEGAGGG----TIATTAIY---HGMHD---------VVEETLN--VDFIR 275 (449)
T ss_pred HHCCCCEEEEEC-CCCCHHCCCCCCCEEEEECCCCCC----EEEHHHHH---CCCHH---------HHHHHCC--HHHHH
T ss_conf 103210256505-888701038888779994278885----53314445---16278---------8887627--48999
Q ss_pred HHHHHHHCC--CCCCCCCCCCCCHHHHCCCCCC-CCCEEEEECCCCC---CCCHHHHHHHHHCCCCHHHHHHHHCCCC--
Q ss_conf 888876304--6322223454201220120025-4430478710048---9867999999966989889876524671--
Q gi|254780569|r 237 PLLKILRKT--GKIKALAHITGGGLTENIPRAI-PAHLTASINLNSV---EVPQIISWLSKKAHVKPAEVLRTFNCGI-- 308 (357)
Q Consensus 237 ~i~~ll~~~--~~i~~~ahITGGGl~~nL~RiL-p~gl~a~Id~~~~---p~p~iF~~I~~~g~I~~~EM~rtFNmGi-- 308 (357)
.+..+++.. ..||+|.++|.||+.+.-.++- -.+++.++|.++. -.|.+.+.|++. +|++ +|+
T Consensus 276 a~eai~~s~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lvfDeekv~sliNpkVl~MLeel-~ID~--------lGvSi 346 (449)
T COG1973 276 ACEAIVRSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFDEEKVRSLINPKVLKMLEEL-NIDP--------LGVSI 346 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEECHHHHHHHCCHHHHHHHHHC-CCCC--------CCCCC
T ss_conf 99999985056653454305477614437876553272699718999864098999999971-8884--------30202
Q ss_pred C-EEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEE
Q ss_conf 1-6999868989999999997799808999999778872008996315
Q gi|254780569|r 309 G-MVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSL 355 (357)
Q Consensus 309 G-mvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~~~~~~~V~~~G~~ 355 (357)
- +++++|++.++.+.+.++..|..+-++|+|+++.+. +.+++.|..
T Consensus 347 Dslmii~ped~a~~v~k~~~~agvr~~~vG~Vee~~~~-~~l~~~gee 393 (449)
T COG1973 347 DSLMIIAPEDVADLVKKALRGAGVRAEEVGRVEEGGQG-VILVDGGEE 393 (449)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-EEEEECCEE
T ss_conf 01789666131699999987458623688666327842-199879975
No 31
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.59 E-value=2.6e-14 Score=120.52 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=159.2
Q ss_pred EEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HH----HH
Q ss_conf 15756554468871899956888789999998288550168888854346788541122110000033203-78----99
Q gi|254780569|r 48 GGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLN-PD----QA 122 (357)
Q Consensus 48 ~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~-~~----~~ 122 (357)
|++.+++. ..+--++.++|.-..+..+ +-|. =+.-.|+=++-+|+|+||+|++..|.+-++..+ ++ .+
T Consensus 2 a~V~~~~~--~~~~g~a~s~g~~p~~~~~----dP~~-ga~~aV~Ea~rni~~~Ga~p~ai~~~lnf~~p~~~~~~~~~l 74 (264)
T cd02204 2 AAVLRIPG--ETDKGLAMSTGENPRYSLL----DPYA-GAALAVAEAVRNLVAVGADPLAITDCLNFGNPEKPEGEMGQL 74 (264)
T ss_pred CEEEEECC--CCCEEEEEECCCCCCCEEE----CHHH-HHHHHHHHHHHHHHCCCCCHHHHEECHHCCCCCCCCCHHHHH
T ss_conf 55998638--9985999974799961434----8999-999999999988752698389951001102877785078889
Q ss_pred HHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCC-C----CEEEEEEEEECC-CCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 9999999999986095221430100000136556-6----336899997415-421133345552489995386554323
Q gi|254780569|r 123 TSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD-Y----DLAGFAVGAVER-KELLSPENVCAGDLILGLPSSGLHSNG 196 (357)
Q Consensus 123 ~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~-~----Dlag~~vG~v~k-~~ii~~~~i~~GD~IIgl~SsG~HsNG 196 (357)
.+.++|+.++|++.|++++||.. .+|.... . -+.-+++|.++. .+.+++.--++||.|+-++.+.-+.-|
T Consensus 75 ~~av~g~~~~~~~lgiP~v~G~~----Sl~n~~~~~~ippTlvi~~vg~v~~~~~~~t~~~k~~g~~i~lig~~~~~~gg 150 (264)
T cd02204 75 VEAVLGLGDACRALGTPVIGGKD----SLYNETEGVAIPPTLVIGAVGVVDDVRKIVTLDFKKEGDLLYLIGETKDELGG 150 (264)
T ss_pred HHHHHHHHHHHHHCCCCEECCEE----EEECCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 99999999999970996203446----65146678667885289999732573002415434799879995788455787
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC-CCCCEEEEE
Q ss_conf 2034444553115545667666663066875397201226888876304632222345420122012002-544304787
Q gi|254780569|r 197 FALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA-IPAHLTASI 275 (357)
Q Consensus 197 ySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~Ri-Lp~gl~a~I 275 (357)
-.+.+ .+... ....+ +..+-.... + ..+.+++++++ ..|.++++|..|||...|.+| +..++++.|
T Consensus 151 s~~~~-~~~~~--~~~~~-~~~d~~~~k-------~-~~~~i~~l~~~-~li~s~hDvS~GGL~~al~EMa~~~~~G~~i 217 (264)
T cd02204 151 SEYAL-AYHGL--GGGAP-PLVDLEREK-------A-LFDAVQELIKE-GLVLSAHDVSDGGLAVALAEMAFAGGLGAEV 217 (264)
T ss_pred CHHHH-HHCCC--CCCCC-CCCCHHHHH-------H-HHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 79999-97087--88985-658999999-------9-99999899865-9612787678781999999998428965999
Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC-EEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 1004898679999999669898898765246711-699986898999999999779980899999
Q gi|254780569|r 276 NLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIG-MVIIVHPDNKDCIIKKFQENNENIILIGEV 339 (357)
Q Consensus 276 d~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiG-mvlvV~~e~a~~v~~~l~~~g~~a~iIG~V 339 (357)
+.+..+.|. ++| |+---| |++.|++++.+.+. .++.+.++..||+|
T Consensus 218 ~l~~~~~~~--~~L--------------FsEs~gr~vv~v~~~~~~~~~--~~~~~v~~~~IG~v 264 (264)
T cd02204 218 DLSKDDAED--ELL--------------FSESLGRVLVEVKPENEEVFE--AEEAGVPATVIGTV 264 (264)
T ss_pred ECCCCCCHH--HHE--------------ECCCCCEEEEEECCCHHHHHH--HHHCCCCEEEEEEC
T ss_conf 838999825--750--------------378888699998724299999--98889996998769
No 32
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.56 E-value=3.7e-13 Score=112.44 Aligned_cols=259 Identities=20% Similarity=0.267 Sum_probs=170.8
Q ss_pred CCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHH
Q ss_conf 77731575655446887189995688878999999828855016888885434678854112211000003320-37899
Q gi|254780569|r 44 IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQL-NPDQA 122 (357)
Q Consensus 44 ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l-~~~~~ 122 (357)
-++-+++.++... +.-++.++|.-.....+ +-|. =+.-.|+=++--|+|+||+|++.+|-+..+.. +++..
T Consensus 436 P~~DaaVi~i~~s---~~g~a~s~g~~p~~~~~----dP~~-ga~~aV~Ea~rNlva~Ga~plai~d~lnfgnPe~pe~~ 507 (736)
T PRK01213 436 PGGDAAVVRIEGT---GKGLAMTTDCNPRYVYL----DPYE-GAKLAVAEAYRNVAAVGAEPLAITDCLNFGNPEKPEVM 507 (736)
T ss_pred CCCCEEEEEECCC---CEEEEEECCCCCHHHCC----CHHH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 8987179985589---75899955878515206----9999-99999999997788617861322125323897787787
Q ss_pred ---HHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCC---C--CEEEEEEEEEC-CCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf ---9999999999986095221430100000136556---6--33689999741-5421133345552489995386554
Q gi|254780569|r 123 ---TSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD---Y--DLAGFAVGAVE-RKELLSPENVCAGDLILGLPSSGLH 193 (357)
Q Consensus 123 ---~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~---~--Dlag~~vG~v~-k~~ii~~~~i~~GD~IIgl~SsG~H 193 (357)
.+-++|+.++|++.+++++||-- .+|.+.. . -+.-+++|.++ -++.++++--++||.|+-+..+--+
T Consensus 508 ~~l~~av~g~~dac~~l~ipvv~Gkd----Slyne~~~~~I~PTpvI~~vg~v~Dv~~~vt~~~k~~g~~i~lig~~~~~ 583 (736)
T PRK01213 508 WQFVEAVRGIAEACRALGTPVVGGNV----SLYNETNGTAIYPTPVIGMVGLIDDVTKAITSGFKEEGDLIYLLGETKGE 583 (736)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEE----CCCCCCCCCCCCCCCEEEEEEEEECCHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf 88999999999999981999675753----77366699357875159987775060002373335789749997178776
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC-CCCCEE
Q ss_conf 3232034444553115545667666663066875397201226888876304632222345420122012002-544304
Q gi|254780569|r 194 SNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA-IPAHLT 272 (357)
Q Consensus 194 sNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~Ri-Lp~gl~ 272 (357)
-.|-.+.+.+.... ....|..+-.... + ..+.+.+++++ ..|.+.++|.-|||.-.|.+| +..+++
T Consensus 584 LGGS~~~~~~~~~~----~~~~P~vd~~~~~-------~-~~~~i~~li~~-~~I~s~HDiSdGGL~~aLaEMaf~~~~G 650 (736)
T PRK01213 584 LGGSEYLKVVHGRV----GGRPPAVDLAAEK-------R-LGELLREAIRA-GLVSSAHDVSDGGLAVALAEMAIASGLG 650 (736)
T ss_pred CCCCHHHHHHHCCC----CCCCCCCCHHHHH-------H-HHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 56219999972755----8989987999999-------9-99999999977-9869998886158999999998569973
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC-EEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 7871004898679999999669898898765246711-699986898999999999779980899999977
Q gi|254780569|r 273 ASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIG-MVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342 (357)
Q Consensus 273 a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiG-mvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~ 342 (357)
+.|+++..... ... .-|+--.| +++-|++++.+++.+.+++.|.++.+||+|...
T Consensus 651 ~~i~l~~~~~~-~~~--------------~LFsE~~gr~vveV~~~~~~~~~~~~~~~gi~~~~IG~v~~~ 706 (736)
T PRK01213 651 ATVDLSSDGGR-PDA--------------LLFSESQGRYVVSVPPENEEAFEELAEALGVPATVIGVVGGD 706 (736)
T ss_pred EEEECCCCCCC-HHH--------------HHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 79962888887-677--------------612888865999985889999999998779988998899885
No 33
>pfam00586 AIRS AIR synthase related protein, N-terminal domain. This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=99.51 E-value=1.4e-14 Score=122.31 Aligned_cols=94 Identities=36% Similarity=0.559 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHH
Q ss_conf 773157565544688718999568887899999982885501688888543467885411221100000332-0378999
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LNPDQAT 123 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~-l~~~~~~ 123 (357)
|..+++++++. +..|+.+||++.++.... ..+..+|+.++++|+|||+||||+|+++++++..++ .+++.++
T Consensus 1 GdDaavi~~~~----~~~lv~ttD~~~~~~~f~---~~p~~~g~~av~~~~sDi~a~Ga~P~~~~~~l~~~~~~~~~~l~ 73 (95)
T pfam00586 1 GDDAAVIRLGE----GPALVVTTDGVVTHVHFA---ADPYDGGATAVAGNLSDLAAMGAKPLAFLDGLALGEGLDPEWLE 73 (95)
T ss_pred CCEEEEEEECC----CCEEEEEECCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCHHHHH
T ss_conf 97059997099----988999967778888678---89899999999999861997499916507989769975236899
Q ss_pred HHHHHHHHHHHHCCCEECCCCH
Q ss_conf 9999999999860952214301
Q gi|254780569|r 124 SIIKGIAAGCCQAGCALIGGET 145 (357)
Q Consensus 124 ~ii~gi~~~c~~~g~~liGGET 145 (357)
++++|+.++|++.|++++||||
T Consensus 74 ~~~~g~~~~~~~~g~~ivGGdT 95 (95)
T pfam00586 74 EIVRGIAEAANEFGVPLVGGDT 95 (95)
T ss_pred HHHHHHHHHHHHHCCEEECCCC
T ss_conf 9999999999992998837079
No 34
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.22 E-value=5.6e-11 Score=97.21 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=124.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHCCCCHH--------------HHH-------HHHHHHHHHHHHHHCCCEECCCCH--
Q ss_conf 8854346788--541122110000033203--------------789-------999999999999860952214301--
Q gi|254780569|r 91 VAMCVNDILT--HGAEPLFFLDYLATSQLN--------------PDQ-------ATSIIKGIAAGCCQAGCALIGGET-- 145 (357)
Q Consensus 91 vam~vNDi~~--~GA~Pl~fldyia~~~l~--------------~~~-------~~~ii~gi~~~c~~~g~~liGGET-- 145 (357)
+.=.+-|+.+ +||+|++-++-+.++.+. |+. +.+-..|.++.-.+.|.|.++|..
T Consensus 311 ~GG~IRD~~atG~Ga~P~Ag~~gy~~~~lripg~~~Pwe~~~~~P~~i~s~l~I~~~a~~G~s~yGN~fG~P~i~Gy~rt 390 (1294)
T PRK05297 311 SGGEIRDEGATGRGSKPKAGLTGFSVSNLRIPGFEQPWEEDYGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGYFRT 390 (1294)
T ss_pred CCCEECCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCEECCEEEE
T ss_conf 57612356667876442035312540466688878875334688643468300464100014102851377330534566
Q ss_pred HHC--CC-----C--CCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECC----CCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 000--00-----1--36556633689999741542113334555248999538----65543232034444553115545
Q gi|254780569|r 146 AEM--PG-----L--YHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPS----SGLHSNGFALVRKIISLSQLSWK 212 (357)
Q Consensus 146 Aem--P~-----v--y~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~S----sG~HsNGySLvRkil~~~~~~~~ 212 (357)
=|+ +. + |.+ ..=++| ++|.++++++.. ..+++||.||-|+. .|+|.--+|-.- ..+......
T Consensus 391 fe~~~~~~~~~e~~gy~k-pim~aG-gvG~i~~~~v~k-~~~~~G~~vi~lGG~tgrdGiGGat~SS~~--~~~~s~~ld 465 (1294)
T PRK05297 391 FEQKVNSHNGGEVRGYHK-PIMLAG-GIGNIRADHVQK-GEIPVGAKLIVLGGPAMRIGLGGGAASSMA--SGQSSEDLD 465 (1294)
T ss_pred EEEECCCCCCCEEECCCC-CEEEEE-EEEECCHHHCCC-CCCCCCCEEEEECCCCCCCCCCCHHHHHHH--CCCCCCCCC
T ss_conf 322025567752620357-769986-677046665414-589999999997896554577850121232--167642345
Q ss_pred CCCCCCCCCCHHHHHCCCCCHH--HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCCHHHHHH
Q ss_conf 6676666630668753972012--268888763046322223454201220120025-4430478710048986799999
Q gi|254780569|r 213 DPSPISSEHSLGETLLTPTRIY--VSPLLKILRKTGKIKALAHITGGGLTENIPRAI-PAHLTASINLNSVEVPQIISWL 289 (357)
Q Consensus 213 ~~~~~~~~~tl~e~LL~PtriY--~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I 289 (357)
- ..-..|+..++- |+. .+.++++ .....|.+|.|.-.||+...++++. +.+++++||++..|.-
T Consensus 466 -~----~sVQrGnp~mEr-r~qevi~~c~el-~~~npI~~IhD~GAGGlsnai~Ela~~~~~G~~i~Ld~Vp~~------ 532 (1294)
T PRK05297 466 -F----ASVQRGNPEMER-RCQEVIDRCWQL-GDNNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKVPSD------ 532 (1294)
T ss_pred -C----CCCCCCCHHHHH-HHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCHHHHHHCCCCEEEEEHHHCCCC------
T ss_conf -4----110248878999-999999999971-689877999855887311012877613687189992107167------
Q ss_pred HHHCCCCHHHHHHHHCC-CCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 99669898898765246-7116999868989999999997799808999999778
Q gi|254780569|r 290 SKKAHVKPAEVLRTFNC-GIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 (357)
Q Consensus 290 ~~~g~I~~~EM~rtFNm-GiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~~ 343 (357)
+ -++++.|++= |- ==.|+++|+|++.+++.+++++.+.++.+||+|++.+
T Consensus 533 -~-~glsp~EIw~--sESQERm~l~v~~~~~~~f~~i~~rE~~~~~vVG~vT~~~ 583 (1294)
T PRK05297 533 -E-PGMSPLEIWC--NESQERYVLAIAPEDLELFEAICERERCPFAVVGEATEER 583 (1294)
T ss_pred -C-CCCCHHHHHH--HCCCHHEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf -8-9988899866--4330007999887569999999998099836899872586
No 35
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.20 E-value=1.3e-09 Score=87.59 Aligned_cols=259 Identities=19% Similarity=0.280 Sum_probs=165.1
Q ss_pred CCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HH---H
Q ss_conf 7315756554468871899956888789999998288550168888854346788541122110000033203-78---9
Q gi|254780569|r 46 GFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLN-PD---Q 121 (357)
Q Consensus 46 ~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~-~~---~ 121 (357)
.-+++.+++...+...-++.++|.=..=.+ .+-| .=|.-.||=++--|+|+||+|++..|-+-.+... ++ +
T Consensus 448 ~DaaV~r~~~~~~~~~g~A~t~~~np~~~~----ldpy-~Ga~~aVaEa~rNl~a~Ga~pla~~d~lnfg~pe~pE~~~q 522 (743)
T COG0046 448 ADAAVLRISEDSGTGKGLAMTTGENPRYAL----LDPY-AGAKLAVAEALRNLAATGAKPLALTDNLNFGNPEKPEVMGQ 522 (743)
T ss_pred CCEEEEEECCCCCCCCEEEEECCCCCCCEE----ECHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHH
T ss_conf 664799850467876248997488986067----7766-77999999999778760870041200320579998015667
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCC-----CEEEEEEEEEC-CCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 999999999999860952214301000001365566-----33689999741-542113334555248999538655432
Q gi|254780569|r 122 ATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDY-----DLAGFAVGAVE-RKELLSPENVCAGDLILGLPSSGLHSN 195 (357)
Q Consensus 122 ~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~-----Dlag~~vG~v~-k~~ii~~~~i~~GD~IIgl~SsG~HsN 195 (357)
+.+.++|+.++|+..+++++||-- .+|.+..+ -++-+++|.|+ -.+++++.--+.||.|+-++..--+ =
T Consensus 523 ~~~a~~g~~eac~~l~~pvv~Gnv----Slynet~~~~i~PTpvi~~vg~v~dv~k~~~~~~~~~g~~i~llG~~~~~-l 597 (743)
T COG0046 523 FVAAVAGLAEACRALGIPVVGGNV----SLYNETNGQPIPPTPVIGAVGLVEDVRKVLTPELKKAGLLLYLLGETKDE-L 597 (743)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEE----EEEECCCCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCCEEEEECCCCCC-C
T ss_conf 999999999999980998003423----00200179646996569999986232342375546688689990897566-6
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC-CCCCEEEE
Q ss_conf 32034444553115545667666663066875397201226888876304632222345420122012002-54430478
Q gi|254780569|r 196 GFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA-IPAHLTAS 274 (357)
Q Consensus 196 GySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~Ri-Lp~gl~a~ 274 (357)
|=|.--+++.... ....|..+-..+ |.+...+++++++ ..|.+.+++.-|||.-.|.+| +..++++.
T Consensus 598 ggS~~~~~~~~~~---~g~~p~~dl~~e--------k~~~~~i~~~i~~-~~v~aahD~s~GGL~~aLaemaf~~~~G~~ 665 (743)
T COG0046 598 GGSELAQVYHGLG---DGPPPVVDLAEE--------KKFFDAIRALIAD-GKVLAAHDVSDGGLAVALAEMAFAGGIGLE 665 (743)
T ss_pred CHHHHHHHHHCCC---CCCCCCCCHHHH--------HHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEE
T ss_conf 5549999985113---799997798999--------9999999999756-965799873656099999999851587227
Q ss_pred ECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC-EEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 71004898679999999669898898765246711-699986898999999999779980899999977
Q gi|254780569|r 275 INLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIG-MVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342 (357)
Q Consensus 275 Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiG-mvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~ 342 (357)
|+.+...-+..+. .-||--.| +++.++++++. ....++.+....++|.+...
T Consensus 666 i~~~~~~~~~~~~--------------~LFsE~~gr~i~~~~~~~~~--~~~~~~~~~~~~~~G~~~~~ 718 (743)
T COG0046 666 IDLDELGDDRLDA--------------LLFSESLGRVIVVVAEEEAE--VEGAEAVGVPLKVIGLVGGD 718 (743)
T ss_pred EECCCCCCCCHHH--------------HHHCCCCCCEEEEECCHHHH--HHHHHHCCCEEEEEEECCCC
T ss_conf 8755456531466--------------75276787389995631444--43201027524563201465
No 36
>KOG3939 consensus
Probab=99.02 E-value=2.1e-08 Score=79.17 Aligned_cols=269 Identities=19% Similarity=0.244 Sum_probs=148.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCC-H-HH---HHHHHHHHHHHHH
Q ss_conf 871899956888789999998288550168888854346788541122-1100000332-0-37---8999999999999
Q gi|254780569|r 59 VDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPL-FFLDYLATSQ-L-NP---DQATSIIKGIAAG 132 (357)
Q Consensus 59 ~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl-~fldyia~~~-l-~~---~~~~~ii~gi~~~ 132 (357)
..-.||.+||=.=.-+.=-+++ |.=.-|-...|+++||..-- -+|..++++. . +. .++--+++|..++
T Consensus 11 ~gl~lvqttdffyp~vddpy~m------griacanvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~pl~~~gfkda 84 (312)
T KOG3939 11 GGLLLVQTTDFFYPLVDDPYMM------GRIACANVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIPLIIQGFKDA 84 (312)
T ss_pred CCEEEEEEECEEEECCCCHHHH------HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 9768998503044525786776------5789988888888725321052302224411102565332068888876778
Q ss_pred HHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH-HHHHCCCC
Q ss_conf 98609522143010000013655663368999974154211333455524899953865543232034444-55311554
Q gi|254780569|r 133 CCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKI-ISLSQLSW 211 (357)
Q Consensus 133 c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRki-l~~~~~~~ 211 (357)
++++|-++.||.|-.-|-. -+-|-+.-+..++++|-++++.|||+++-..+-|-. ++..-+. +....-.+
T Consensus 85 a~e~gt~v~ggqtv~npw~------~igGVatsVcq~ne~i~pdnAvpGdvlvLTkplg~q---vAv~~h~wi~~~~ek~ 155 (312)
T KOG3939 85 AEEAGTPVTGGQTVINPWC------IIGGVATSVCQPNEIIMPDNAVPGDVLVLTKPLGGQ---VAVNAHQWIDNQPEKW 155 (312)
T ss_pred HHHCCCCEECCEEECCCCE------EECCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCE---EEHHHHHHHHCCCCEE
T ss_conf 9735984466705417403------445541233374310055677776369993267752---1127988876175101
Q ss_pred CCCCCCCC----CCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH---CCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 56676666----630668753972012268888763046322223454201220---12002544304787100489867
Q gi|254780569|r 212 KDPSPISS----EHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE---NIPRAIPAHLTASINLNSVEVPQ 284 (357)
Q Consensus 212 ~~~~~~~~----~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~---nL~RiLp~gl~a~Id~~~~p~p~ 284 (357)
......-. .+.+-++...-+ |.+..-+.|......|+..+|||.|+.+ ||.+...+++.+.|. +.|+-.
T Consensus 156 ~~~~l~vs~~die~ay~~a~~~M~--~Lnr~aA~lmhkynaHaaTDItGFgllGHaqnLa~qqk~~v~f~i~--~LPiI~ 231 (312)
T KOG3939 156 NKLKLEVSDEDIEKAYEEAMKSMA--RLNRNAAGLMHKYNAHAATDITGFGLLGHAQNLAKQQKNEVSFQIH--KLPIIA 231 (312)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHH--HHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC--CCHHHH
T ss_conf 124555258889999999974564--3044665432110223222423311134577899986246302102--570566
Q ss_pred HHHHHHHHCCCCHHHHHHHH------CCCCCEEEEECHHHHHHHHHHHHHC--CC-CEEEEEEEEECCCCCCEEEEE
Q ss_conf 99999996698988987652------4671169998689899999999977--99-808999999778872008996
Q gi|254780569|r 285 IISWLSKKAHVKPAEVLRTF------NCGIGMVIIVHPDNKDCIIKKFQEN--NE-NIILIGEVTQRSEKSPPILYQ 352 (357)
Q Consensus 285 iF~~I~~~g~I~~~EM~rtF------NmGiGmvlvV~~e~a~~v~~~l~~~--g~-~a~iIG~V~~~~~~~~~V~~~ 352 (357)
-...+.+.++ +|++-. --| |+++..|.|++++..+.+++. |+ .||+||.|++++ +..+|.=+
T Consensus 232 km~~vska~G----~~f~l~qGts~ETsG-GlLIclP~eqaakfcaei~s~k~gegqAWIIGiVekgn-~tArIidk 302 (312)
T KOG3939 232 KMAEVSKACG----NMFKLRQGTSAETSG-GLLICLPREQAAKFCAEIKSPKNGEGQAWIIGIVEKGN-STARIIDK 302 (312)
T ss_pred HHHHHHHHCC----CCCEECCCCCCCCCC-CEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC-CCEEECCC
T ss_conf 5889987526----420001477766778-55997358899999987458766887347999985487-41373177
No 37
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.72 E-value=5.2e-06 Score=62.38 Aligned_cols=237 Identities=17% Similarity=0.254 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HH-HCCCCHH-HHHHHHHHHHHH-HHHHHCCCEECCCCH-HHCCCCCCCCC----C
Q ss_conf 88854346788541122110----00-0033203-789999999999-999860952214301-00000136556----6
Q gi|254780569|r 90 LVAMCVNDILTHGAEPLFFL----DY-LATSQLN-PDQATSIIKGIA-AGCCQAGCALIGGET-AEMPGLYHDRD----Y 157 (357)
Q Consensus 90 lvam~vNDi~~~GA~Pl~fl----dy-ia~~~l~-~~~~~~ii~gi~-~~c~~~g~~liGGET-AemP~vy~~~~----~ 157 (357)
.|+=.+--|++.|..++.=+ +. .+++... ...+-+-++.+. +.|++.|+++++|-- --|...|.++. +
T Consensus 714 AVaEAltNLvaa~i~~l~~i~LSaNWM~a~g~pgE~a~Ly~av~Ai~~e~c~~Lgi~ip~GKDSlSm~~~~~e~~~~~~v 793 (1294)
T PRK05297 714 AVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGEDAGLYDAVKAVGMELCPALGITIPVGKDSLSMKTKWQEGGEDKEV 793 (1294)
T ss_pred HHHHHHHHHHHCCCCCHHHEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
T ss_conf 99999998663456667663744100445799853689999999999988998398634576666755265218975243
Q ss_pred ----CEEEEEEEEEC-CCCCCCCCCCCCCEEEEEEC-CCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHCCC
Q ss_conf ----33689999741-54211333455524899953-86554323203444455311554566766-6663066875397
Q gi|254780569|r 158 ----DLAGFAVGAVE-RKELLSPENVCAGDLILGLP-SSGLHSNGFALVRKIISLSQLSWKDPSPI-SSEHSLGETLLTP 230 (357)
Q Consensus 158 ----Dlag~~vG~v~-k~~ii~~~~i~~GD~IIgl~-SsG~HsNGySLvRkil~~~~~~~~~~~~~-~~~~tl~e~LL~P 230 (357)
-|.-+++|.|+ -.+.+++.=-++|+.|+-+. +.|-+.=|=|..-.++.+. .+..|. .+...+..
T Consensus 794 ~~P~TLVisa~a~v~Dv~~~vTPelK~~gs~L~lIdl~~~~~~LGGS~laqv~~~~----g~~~Pdvd~~~~lk~----- 864 (1294)
T PRK05297 794 TSPLSLIISAFAPVEDVRKTLTPQLRTDDTVLLLIDLGRGKNRLGGSALAQVYNQL----GDEAPDVDDPEDLKG----- 864 (1294)
T ss_pred CCCCCEEEEEEEEECCCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHCCC----CCCCCCCCCHHHHHH-----
T ss_conf 37887799999971471103264431599879999768996752144999985656----798969778999999-----
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 201226888876304632222345420122012002-5443047871004898679999999669898898765246711
Q gi|254780569|r 231 TRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA-IPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIG 309 (357)
Q Consensus 231 triY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~Ri-Lp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiG 309 (357)
....+.+++++ ..|.+.+++.-|||...|.+| +..++++.|+.+... .+-+-.-||-=.|
T Consensus 865 ---~f~~iq~Li~~-glI~S~HDvSDGGL~~alaEMaFag~~G~~I~l~~~~---------------~d~~~~LFsEe~G 925 (1294)
T PRK05297 865 ---FFNAIQALVAE-GLLLAYHDRSDGGLFATLAEMAFAGHCGLDIDLDALG---------------DDLLAALFNEELG 925 (1294)
T ss_pred ---HHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC---------------HHHHHHHHCCCCE
T ss_conf ---99999999977-9878983177780999999998467851489667652---------------3578887451753
Q ss_pred EEEEECHHHHHHHHHHHHHCCCC--EEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 69998689899999999977998--089999997788720089963151
Q gi|254780569|r 310 MVIIVHPDNKDCIIKKFQENNEN--IILIGEVTQRSEKSPPILYQGSLI 356 (357)
Q Consensus 310 mvlvV~~e~a~~v~~~l~~~g~~--a~iIG~V~~~~~~~~~V~~~G~~~ 356 (357)
.|+-|++++.+.+.+.|++.|.. +.+||+++.. .+..|..+|+.+
T Consensus 926 ~Viqv~~~~~~~V~~~l~~~gl~~~~~~IG~~~~~--~~i~I~~~~~~i 972 (1294)
T PRK05297 926 AVIQVRAADRDAVEAILAEAGLSDCSHVIGKPNAG--DRIEITRNGKTV 972 (1294)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCC--CCEEEEECCEEE
T ss_conf 89997134289999999875985204897537678--728999899987
No 38
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase; InterPro: IPR010077 This entry describes a family of large proteins of herpes virus. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). The protein shows homology to eukaryotic FGAM-synthase. ; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0005198 structural molecule activity, 0019033 viral tegument.
Probab=98.15 E-value=0.00023 Score=50.87 Aligned_cols=226 Identities=15% Similarity=0.221 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHCCCEECCC--------CHHHCCCC-CCCCC---CC-E
Q ss_conf 34678854112211000003320--37899999999999998609522143--------01000001-36556---63-3
Q gi|254780569|r 95 VNDILTHGAEPLFFLDYLATSQL--NPDQATSIIKGIAAGCCQAGCALIGG--------ETAEMPGL-YHDRD---YD-L 159 (357)
Q Consensus 95 vNDi~~~GA~Pl~fldyia~~~l--~~~~~~~ii~gi~~~c~~~g~~liGG--------ETAemP~v-y~~~~---~D-l 159 (357)
+.|++.+++ ++++.- ..+.+.+.+.-=++-|++.||++.=. .++-.|.- -++.+ +- +
T Consensus 712 l~~~~iT~s--------vtw~~~~~~~~~L~~~l~~ck~FC~~LGV~~~~~~A~~~~~~~~~~~~~~~~~~~~vl~~~~I 783 (1313)
T TIGR01739 712 LEDVIITLS--------VTWSPEDHVYSLLKEALRACKDFCEELGVSFTVTSAASSPTQSSRSAPTTIQRESKVLTFNSI 783 (1313)
T ss_pred CCCEEEEEE--------EECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEE
T ss_conf 242479888--------854841004899999999999999749916987025788888878888578865324301208
Q ss_pred EEE--EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHCCCCCHHH
Q ss_conf 689--99974154211333455524899953865543232034444553115545--66766666306687539720122
Q gi|254780569|r 160 AGF--AVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWK--DPSPISSEHSLGETLLTPTRIYV 235 (357)
Q Consensus 160 ag~--~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~--~~~~~~~~~tl~e~LL~PtriY~ 235 (357)
+.+ |-|...-.+.|++.==++|..||-|+-+ +.++|+--|+++-...-. ...+..+...+...|
T Consensus 784 Vfsa~~~~~~~~~~~iTPdlk~~Gs~L~~l~~~----~~~~laGSif~~i~~~~~~~~~~~~~~~~~l~~ll-------- 851 (1313)
T TIGR01739 784 VFSASAPVKLGSAKKITPDLKKHGSHLIWLSIH----QKLTLAGSIFEQILGLSATIHRLPELSPESLKKLL-------- 851 (1313)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC----CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH--------
T ss_conf 999987413666664575544788889999428----97201767999862103577656556889999999--------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEE
Q ss_conf 6888876304632222345420122012002-544304787100489867999999966989889876524671169998
Q gi|254780569|r 236 SPLLKILRKTGKIKALAHITGGGLTENIPRA-IPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIV 314 (357)
Q Consensus 236 ~~i~~ll~~~~~i~~~ahITGGGl~~nL~Ri-Lp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV 314 (357)
..+..++++ ..|-.++||.=|||.--+-+| |.-+-+++|..-+ ..+..++++.-+.- |+|+=|
T Consensus 852 ~~~~~L~~~-~~I~SgHDvSDGGL~ac~~EMAlaG~kgv~i~~P~-~~~~~~~~l~SETP--------------G~viEV 915 (1313)
T TIGR01739 852 KALQELVKE-GVIVSGHDVSDGGLVACVAEMALAGGKGVRITLPA-HITDPLEFLLSETP--------------GVVIEV 915 (1313)
T ss_pred HHHHHHHHC-CCEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHCCCC--------------CEEEEE
T ss_conf 999877656-73588754361368999999996389648997176-43556887530589--------------569997
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEEE-CCCCCCEEEEEEEEC
Q ss_conf 689899999999977998089999997-788720089963151
Q gi|254780569|r 315 HPDNKDCIIKKFQENNENIILIGEVTQ-RSEKSPPILYQGSLI 356 (357)
Q Consensus 315 ~~e~a~~v~~~l~~~g~~a~iIG~V~~-~~~~~~~V~~~G~~~ 356 (357)
+++..++|+..|++.+.-+++||+|.+ +.+....|.-+++.|
T Consensus 916 ~~~~~~~v~~~l~~~~~~~~~iG~V~~~g~~~~~~v~h~~~~l 958 (1313)
T TIGR01739 916 EPESLKEVLQFLRSEGLVAAVIGRVGEEGESSTFSVVHNSTVL 958 (1313)
T ss_pred CCCCHHHHHHHHHHCCCCEEECCEEECCCCCCEEEEEECCCEE
T ss_conf 7740889999998679714440174425799727999788268
No 39
>KOG1907 consensus
Probab=97.81 E-value=0.0028 Score=43.24 Aligned_cols=208 Identities=20% Similarity=0.301 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHCCCEECCCCH-HHCC------CCCCCCCCCEEEEEEEEECCCCCCCCC--CCCCCEE--E--EE
Q ss_conf 89999999999999860952214301-0000------013655663368999974154211333--4555248--9--99
Q gi|254780569|r 120 DQATSIIKGIAAGCCQAGCALIGGET-AEMP------GLYHDRDYDLAGFAVGAVERKELLSPE--NVCAGDL--I--LG 186 (357)
Q Consensus 120 ~~~~~ii~gi~~~c~~~g~~liGGET-AemP------~vy~~~~~Dlag~~vG~v~k~~ii~~~--~i~~GD~--I--Ig 186 (357)
..+-+-++-+..+.++.||++=||-- --|. -+-.++.+-|++|+- .-+-.+..+++ +..+|+. + |-
T Consensus 769 arlydAv~aL~~~L~eLgiAIdgGKDSlSMa~k~~ge~VkaPgtLvIsayap-c~dv~k~vtP~Lk~~~~gs~~~Ll~i~ 847 (1320)
T KOG1907 769 ARLYDAVQALCLGLCELGIAIDGGKDSLSMAMKWDGEVVKAPGTLVISAYAP-CPDVTKTVTPDLKANVDGSKTSLLWID 847 (1320)
T ss_pred HHHHHHHHHHHHHHHHHCEEECCCCCCHHHHEEECCEEEECCCEEEEEEECC-CCCCCEEECCCCCCCCCCCCEEEEEEE
T ss_conf 4799999999999998153103785201100015880871575389986135-787310425122477899721799998
Q ss_pred ECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 5386554323203444455311554566766-666306687539720122688887630463222234542012201200
Q gi|254780569|r 187 LPSSGLHSNGFALVRKIISLSQLSWKDPSPI-SSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPR 265 (357)
Q Consensus 187 l~SsG~HsNGySLvRkil~~~~~~~~~~~~~-~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~R 265 (357)
++++ -..=|=|-.-.+..+.+ +..|. .+-..+... ...+..++.. ..|-|-++|.-|||.-.+.+
T Consensus 848 l~~~-k~rLGgSaLaQvy~QiG----~d~Pdl~~~~~lk~~--------f~~vqqL~~~-~ii~AgHD~SDGGLlvt~lE 913 (1320)
T KOG1907 848 LANS-KMRLGGSALAQVYSQIG----DDCPDLDNFDELKKF--------FSVVQQLLNE-GIILAGHDISDGGLLVTLLE 913 (1320)
T ss_pred CCCC-CCCCCHHHHHHHHHHHC----CCCCCCCCHHHHHHH--------HHHHHHHHHC-CCEEECCCCCCCCHHHHHHH
T ss_conf 4553-22354589999999737----889985334889889--------9999999756-73342553567720088999
Q ss_pred C-CCCCEEEEECCCCCCCC-HHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 2-54430478710048986-799999996698988987652467116999868989999999997799808999999778
Q gi|254780569|r 266 A-IPAHLTASINLNSVEVP-QIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 (357)
Q Consensus 266 i-Lp~gl~a~Id~~~~p~p-~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~~ 343 (357)
| +..+.+.+||+++...- .+|.. -||--.|.|+-|+..+.+++++++++.|..++.||++....
T Consensus 914 MAfag~~gi~idl~~~~~~~~~~~~--------------LF~EElG~v~evs~~dl~~v~~~~~~~gv~~~~ig~~~~~~ 979 (1320)
T KOG1907 914 MAFAGNVGIEIDLDSPNQNIKLFDI--------------LFAEELGAVLEVSDTDLEKVLEIFSEAGVKCEYIGKASAVF 979 (1320)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHH--------------HHHHHHCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 8760466227854774345618889--------------98986171778626539999999986498612541100344
Q ss_pred CCCCE--EEEEEEEC
Q ss_conf 87200--89963151
Q gi|254780569|r 344 EKSPP--ILYQGSLI 356 (357)
Q Consensus 344 ~~~~~--V~~~G~~~ 356 (357)
..... +...|+++
T Consensus 980 g~~~~i~~~~~g~~~ 994 (1320)
T KOG1907 980 GQDAHIKISVNGHLI 994 (1320)
T ss_pred CCCCEEEEECCCEEE
T ss_conf 777459995188578
No 40
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=97.81 E-value=6.1e-05 Score=54.88 Aligned_cols=195 Identities=22% Similarity=0.321 Sum_probs=110.1
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHCCCEECCCCHH--HCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEE-----
Q ss_conf 320378-99999999999998609522143010--0000136556633689999741542113334555248999-----
Q gi|254780569|r 115 SQLNPD-QATSIIKGIAAGCCQAGCALIGGETA--EMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILG----- 186 (357)
Q Consensus 115 ~~l~~~-~~~~ii~gi~~~c~~~g~~liGGETA--emP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIg----- 186 (357)
|||... +...=..|-+..-.+-|. ..|--- -|||-..+ .-. +|.+|+..+++++++ ....|||.||-
T Consensus 386 GKLPQ~ki~~tAA~GYSSYGNQIGL--AT~~V~EiYHpGY~AK-RME-vGAVvAAtP~~nV~R-~~P~~GD~iILLGGkT 460 (1279)
T TIGR01857 386 GKLPQRKITTTAAHGYSSYGNQIGL--ATGQVSEIYHPGYVAK-RME-VGAVVAATPKENVVR-EKPEPGDVIILLGGKT 460 (1279)
T ss_pred CCCCCHHHHHHHCCCCCHHHHHHHH--HHCCEEEEECCCCEEE-EEE-ECCEEEECCCCCCEE-CCCCCCCEEEEECCCC
T ss_conf 8874113322011321012224655--3161347765785012-453-001445058887352-6789887899817852
Q ss_pred --------ECCCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC---CCCCCCCCC
Q ss_conf --------5386554323203444455311554-5667666663066875397201226888876304---632222345
Q gi|254780569|r 187 --------LPSSGLHSNGFALVRKIISLSQLSW-KDPSPISSEHSLGETLLTPTRIYVSPLLKILRKT---GKIKALAHI 254 (357)
Q Consensus 187 --------l~SsG~HsNGySLvRkil~~~~~~~-~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~---~~i~~~ahI 254 (357)
.+||=-|+. =| ++..+... +-.+|.+ +-|+.|.++. ..||=+-|-
T Consensus 461 GRDGiGGATGSSK~h~~-eS-----~~~~GAEVQKGNAp~E-----------------RKiQRLFRn~~v~~LIKkcNDF 517 (1279)
T TIGR01857 461 GRDGIGGATGSSKEHTV-ES-----LELCGAEVQKGNAPEE-----------------RKIQRLFRNGNVTRLIKKCNDF 517 (1279)
T ss_pred CCCCCCCCCCCCHHHHH-HH-----HHHCCCEEECCCCCCC-----------------CCCCCCCCCHHHHHHHHHCCCC
T ss_conf 77755677688566636-86-----8646860303887431-----------------1110004674145561203765
Q ss_pred CCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHH-----HHHCCCCCEEEEECHHHHHHHHHHHHHC
Q ss_conf 42012201200254430478710048986799999996698988987-----6524671169998689899999999977
Q gi|254780569|r 255 TGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVL-----RTFNCGIGMVIIVHPDNKDCIIKKFQEN 329 (357)
Q Consensus 255 TGGGl~~nL~RiLp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~-----rtFNmGiGmvlvV~~e~a~~v~~~l~~~ 329 (357)
=-||..=.+-+ |.+|+ .||++..|. |+-+++-.|+. . .|.++|++|++|+.++..++.
T Consensus 518 GAGGVSVAiGE-LAdG~--~vdLn~VP~--------KYeGLdGTELAISESQE------RMAVvv~~Ed~d~F~~~~~eE 580 (1279)
T TIGR01857 518 GAGGVSVAIGE-LADGL--EVDLNKVPK--------KYEGLDGTELAISESQE------RMAVVVSKEDVDKFLKYAEEE 580 (1279)
T ss_pred CCCCEEEEEEE-CCCCE--EEECCCCCC--------CEECCCCCEEEEECCCC------CCEEECCCCCHHHHHHHHHHC
T ss_conf 88732686522-02740--751575874--------21078851331201455------114672865657899875323
Q ss_pred CCCEEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 998089999997788720089963151
Q gi|254780569|r 330 NENIILIGEVTQRSEKSPPILYQGSLI 356 (357)
Q Consensus 330 g~~a~iIG~V~~~~~~~~~V~~~G~~~ 356 (357)
+++|.+|++||+.+ .-+..|+|+-|
T Consensus 581 NL~AtvvA~VTd~~--rL~m~W~G~~I 605 (1279)
T TIGR01857 581 NLEATVVATVTDKP--RLVMNWKGKTI 605 (1279)
T ss_pred CCCEEEEEEEECCC--CEEEEECCCEE
T ss_conf 85228999995699--70671178657
No 41
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=97.39 E-value=0.017 Score=37.80 Aligned_cols=269 Identities=18% Similarity=0.247 Sum_probs=166.8
Q ss_pred HHHCCCCCHHHHH--HHHHHHH----HHHHHHH-HHHHHHHHCCCCH---------------------------------
Q ss_conf 9828855016888--8854346----7885411-2211000003320---------------------------------
Q gi|254780569|r 78 IETGKNDTIGIDL--VAMCVND----ILTHGAE-PLFFLDYLATSQL--------------------------------- 117 (357)
Q Consensus 78 ~~~~~~~~ig~Dl--vam~vND----i~~~GA~-Pl~fldyia~~~l--------------------------------- 117 (357)
|+.|.|.+===|| +++.-++ -.++|=+ |+++||--|.+++
T Consensus 720 QmVGP~Q~PlADvAVt~~sf~~y~GeA~A~GE~p~~aLLD~~A~ARlAVgEAiTNl~~A~v~~L~~vKlSaNWM~AA~~~ 799 (1401)
T TIGR01735 720 QMVGPWQIPLADVAVTAASFDTYTGEAMAIGERPPLALLDPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHP 799 (1401)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCC
T ss_conf 00066156567789887210212210111144110233385688889999999887530400110324450279746899
Q ss_pred -HHHHHHHHHHHH-HHHHHHCCCEECCC----------CHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCC--C---CCC
Q ss_conf -378999999999-99998609522143----------010000013655663368999974154211333--4---555
Q gi|254780569|r 118 -NPDQATSIIKGI-AAGCCQAGCALIGG----------ETAEMPGLYHDRDYDLAGFAVGAVERKELLSPE--N---VCA 180 (357)
Q Consensus 118 -~~~~~~~ii~gi-~~~c~~~g~~liGG----------ETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~--~---i~~ 180 (357)
+...+-+=++-| .+.|.+.|+++=+| .+-|--.|..|..+-|++|+. +-+=.+-+|++ . +..
T Consensus 800 GEda~LYdav~A~G~e~c~aLgi~IpvGKDSLSM~~~w~~ge~~~V~aP~SLvISAfa~-v~Dvr~tvTP~Lk~~~~v~~ 878 (1401)
T TIGR01735 800 GEDAALYDAVKAVGSELCPALGIAIPVGKDSLSMKTRWQDGEKKSVTAPVSLVISAFAP-VPDVRKTVTPDLKLDKDVGD 878 (1401)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEEEEEE-CCCCCCCCCCCCCCCCCCCC
T ss_conf 96178999999999999886486147777762113210488740888067317875563-36643357854457887664
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHH--CCCCCCCCC-CCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 248999538655432320344445531--155456676-66663066875397201226888876304632222345420
Q gi|254780569|r 181 GDLILGLPSSGLHSNGFALVRKIISLS--QLSWKDPSP-ISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGG 257 (357)
Q Consensus 181 GD~IIgl~SsG~HsNGySLvRkil~~~--~~~~~~~~~-~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGG 257 (357)
++++.-=-+.|=|==|=|..--++.+. .-.+.+..| .++...|... | +.+..++++ .++-|-+|+.=|
T Consensus 879 s~Ll~vdL~~Gk~RLGGsaLAQV~~dsaalP~lG~~~PDlD~~~~Lk~f-------F-~~~Q~L~a~-~~llAyHDrSDG 949 (1401)
T TIGR01735 879 SELLLVDLGKGKNRLGGSALAQVFGDSAALPQLGGDCPDLDDVERLKAF-------F-AVIQGLVAE-DLLLAYHDRSDG 949 (1401)
T ss_pred CEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCCHHHHHHH-------H-HHHHHHHHC-CCEEECCCCCHH
T ss_conf 3146887434765414434332100024334406788898886789999-------9-999999766-870401511425
Q ss_pred HHHHCCCCC-CCCCEEEEECCCCCCCCHHHHH----HHHHCC-------CCHHH--HHHHHCCCCCEEEEECHHHHHHHH
Q ss_conf 122012002-5443047871004898679999----999669-------89889--876524671169998689899999
Q gi|254780569|r 258 GLTENIPRA-IPAHLTASINLNSVEVPQIISW----LSKKAH-------VKPAE--VLRTFNCGIGMVIIVHPDNKDCII 323 (357)
Q Consensus 258 Gl~~nL~Ri-Lp~gl~a~Id~~~~p~p~iF~~----I~~~g~-------I~~~E--M~rtFNmGiGmvlvV~~e~a~~v~ 323 (357)
||.-.|.+| +..+++..||.+..-..- |.. +.+... -+|.| +---||-=.|.||=|.+++.++|+
T Consensus 950 GL~~~l~EMAFAG~cGl~~d~~~~~~~~-~~~nhtalsqslrteevkalaewqeti~~~LF~EELGaV~qV~~~~~~~v~ 1028 (1401)
T TIGR01735 950 GLVTTLLEMAFAGHCGLDVDLDALGDSL-EILNHTALSQSLRTEEVKALAEWQETILAVLFNEELGAVIQVAEEDLAAVL 1028 (1401)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH
T ss_conf 8999999987513686576134420136-677667777665467889998889999986302254536883241178999
Q ss_pred HHHHHCCCCEEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 9999779980899999977887200899631519
Q gi|254780569|r 324 KKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357 (357)
Q Consensus 324 ~~l~~~g~~a~iIG~V~~~~~~~~~V~~~G~~~~ 357 (357)
+.+++++..+.+++..+...+...+|..+|..++
T Consensus 1029 ~~~~~~~L~~~~~~~~~~~~~~~i~i~~~~~~~~ 1062 (1401)
T TIGR01735 1029 ELLRAAGLTALILGIGTPTDEPSIEISVNGATLL 1062 (1401)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEEEECCEEEE
T ss_conf 9998648713331314015677789860884650
No 42
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=96.84 E-value=0.002 Score=44.24 Aligned_cols=216 Identities=22% Similarity=0.352 Sum_probs=134.3
Q ss_pred HHHHHHH--HHHHHHHHHHCCCCHHH---------------HH----HHHHHH---HHHHHHHHCCCEECCCC------H
Q ss_conf 4678854--11221100000332037---------------89----999999---99999986095221430------1
Q gi|254780569|r 96 NDILTHG--AEPLFFLDYLATSQLNP---------------DQ----ATSIIK---GIAAGCCQAGCALIGGE------T 145 (357)
Q Consensus 96 NDi~~~G--A~Pl~fldyia~~~l~~---------------~~----~~~ii~---gi~~~c~~~g~~liGGE------T 145 (357)
=|-=|+| |+|.+=|.=+.++.|.- +. ++=.|+ |-++.-.++|=|.+-|= -
T Consensus 334 RDegATGRGa~pkAGl~Gf~VsNL~IPg~~~PWE~~S~~~P~~~aspLdImieap~G~aafnNeFGrP~L~GYfRtfe~~ 413 (1401)
T TIGR01735 334 RDEGATGRGAKPKAGLTGFCVSNLNIPGLEQPWEDPSFQKPERIASPLDIMIEAPLGAAAFNNEFGRPALLGYFRTFELK 413 (1401)
T ss_pred ECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 43664488771433345610202517788878875421365224576787640676524327765773022233203332
Q ss_pred HHCCCCCCCCCCC----EEEEEEEEECCCCCCCCCCCCCCEEEEEE-------------CCCCCCCCCCCHHHHHHHHHC
Q ss_conf 0000013655663----36899997415421133345552489995-------------386554323203444455311
Q gi|254780569|r 146 AEMPGLYHDRDYD----LAGFAVGAVERKELLSPENVCAGDLILGL-------------PSSGLHSNGFALVRKIISLSQ 208 (357)
Q Consensus 146 AemP~vy~~~~~D----lag~~vG~v~k~~ii~~~~i~~GD~IIgl-------------~SsG~HsNGySLvRkil~~~~ 208 (357)
+..|+- +..+|+ ||| .+|-++.++| ....+++|+.||-| +||=.- -|-|-. -|+-..
T Consensus 414 ~~~P~~-~~R~y~KPIMlaG-GiG~I~~~hi-~K~e~~~G~~~i~lGGPam~IGlGGGAASSvm~-~G~n~~--~LDF~s 487 (1401)
T TIGR01735 414 VSLPGG-EVRGYHKPIMLAG-GIGSIDAEHI-QKGEIEVGALLIVLGGPAMLIGLGGGAASSVMV-SGTNDA--DLDFAS 487 (1401)
T ss_pred HCCCCC-CCCCCCCCHHHHH-HHCCHHHHCC-CCCCCCCCCEEEEECCCEEECCCCCCCHHCEEE-CCCCCH--HHCCCC
T ss_conf 116775-5444335124431-0100012121-057878886899857862254565410000010-578815--524333
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCCHHHH
Q ss_conf 55456676666630668753972012268888763046322223454201220120025-44304787100489867999
Q gi|254780569|r 209 LSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAI-PAHLTASINLNSVEVPQIIS 287 (357)
Q Consensus 209 ~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~ 287 (357)
....+++- .+..-++ ++.+.+ +.+...|-.++|+=-||+...+|+++ |.+.+++||+..++.-
T Consensus 488 VQR~nPEM---err~qeV--------Id~C~~-lG~~NPI~siHDvGAGGlsNa~pEL~~d~~~Ga~i~lr~v~~~---- 551 (1401)
T TIGR01735 488 VQRGNPEM---ERRCQEV--------IDRCVQ-LGEKNPIISIHDVGAGGLSNALPELINDGGRGAVIDLRAVPLD---- 551 (1401)
T ss_pred CCCCCHHH---HHHHHHH--------HHHHHH-CCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECC----
T ss_conf 57788688---7688899--------999985-8798684677125757200100100061447855888465258----
Q ss_pred HHHHHCCCCHHHHH----HHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 99996698988987----65246711699986898999999999779980899999977
Q gi|254780569|r 288 WLSKKAHVKPAEVL----RTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342 (357)
Q Consensus 288 ~I~~~g~I~~~EM~----rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~ 342 (357)
+ =.+++.|.+ +- -.||.|.+++.|-+.+++++.--+..+||+++..
T Consensus 552 ---d-~~lspLEIWcnEsQE-----ryvL~v~~~~l~~f~~iC~RERcPfAvvG~at~~ 601 (1401)
T TIGR01735 552 ---D-PGLSPLEIWCNESQE-----RYVLLVKAEDLEIFTAICERERCPFAVVGTATGD 601 (1401)
T ss_pred ---C-CCCCHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf ---8-887767663004555-----5776327200799998856406983789878668
No 43
>KOG1907 consensus
Probab=94.24 E-value=0.29 Score=29.09 Aligned_cols=264 Identities=18% Similarity=0.291 Sum_probs=132.0
Q ss_pred CCEEEEEE----CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-H---HHHHH--HHCCCCHHHHHHHHHHHH
Q ss_conf 87189995----68887899999982885501688888543467885411-2---21100--000332037899999999
Q gi|254780569|r 59 VDPILVSS----SDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAE-P---LFFLD--YLATSQLNPDQATSIIKG 128 (357)
Q Consensus 59 ~~p~Lv~~----tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~-P---l~fld--yia~~~l~~~~~~~ii~g 128 (357)
..|.-|+- |-|.|-.+.=-...+|=.-.---+..-||-|+..-|-+ | +-|-- .||.+ .+++-+--.|
T Consensus 314 N~PtAVsPfpGA~TGtGGrIRD~~atGrGs~~~agtaGysvg~LnipG~~qPwE~l~f~yP~~iA~p---l~ImIEAsnG 390 (1320)
T KOG1907 314 NHPTAVSPFPGATTGTGGRIRDEGATGRGSYEIAGTAGYSVGDLNIPGYKQPWEDLDFGYPYHIASP---LDIMIEASNG 390 (1320)
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHCCCC
T ss_conf 7875357888874687863522554466642330344422013567888788742355886444787---7877227577
Q ss_pred HHHHHHHCCCEECC--------------CCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECC----C
Q ss_conf 99999860952214--------------30100000136556633689999741542113334555248999538----6
Q gi|254780569|r 129 IAAGCCQAGCALIG--------------GETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPS----S 190 (357)
Q Consensus 129 i~~~c~~~g~~liG--------------GETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~S----s 190 (357)
-++.-.++|=+.|- ||.-| |.+. +=.+| .+|.+++..... ..+.||..+|-|+- -
T Consensus 391 aSdygNkFGeP~I~Gy~rtfg~~v~~~~gerre----y~KP-IMfsg-GiG~i~~~~~~K-~~~apg~~likiGGp~yrI 463 (1320)
T KOG1907 391 ASDYGNKFGEPVISGYARTFGMRVLLENGERRE----YHKP-IMFSG-GIGTIRKQHARK-EPIAPGQLLIKIGGPVYRI 463 (1320)
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCC----CCCC-EEEEC-CCCCCCHHHHHC-CCCCCCCEEEEECCCEEEE
T ss_conf 044435236624555666541123566743001----1245-37605-657668777523-7999997799966826898
Q ss_pred CCCCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 5543232034444553---1155456676666630668753972012268888763046322223454201220120025
Q gi|254780569|r 191 GLHSNGFALVRKIISL---SQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAI 267 (357)
Q Consensus 191 G~HsNGySLvRkil~~---~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~RiL 267 (357)
|+..---|. +..- ..+++. ..-..+..+..-|- | -++++.++-. ...|-++++.--||....|+++.
T Consensus 464 G~GGGAASS---v~~G~g~aeLDFa--aVQRGdaEM~~kl~---r-VvrAC~~lge-~NpI~sIHDqGAGGn~NvlkELV 533 (1320)
T KOG1907 464 GVGGGAASS---VVQGEGSAELDFA--AVQRGDAEMERKLQ---R-VVRACAELGE-NNPIQSIHDQGAGGNGNVLKELV 533 (1320)
T ss_pred ECCCCHHHH---HHCCCCCCCCCHH--HHHCCCHHHHHHHH---H-HHHHHHHHCC-CCCEEEEECCCCCCCCCCCHHHC
T ss_conf 326624445---5437984234568--76348988988999---9-9999997347-99626762257786431208661
Q ss_pred -CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
Q ss_conf -4430478710048986799999996698988987652467116999868989999999997799808999999778872
Q gi|254780569|r 268 -PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKS 346 (357)
Q Consensus 268 -p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~~~~~ 346 (357)
|.+++|+++...++.-+ . .+++.|.+-.= .-=-.++-|++++.+-..+++++..-+..++|+|+. +
T Consensus 534 ~~~~~Ga~~~~r~~~~gd-------p-smS~~EiW~aE-yQE~~allv~a~~l~~le~IckRERcp~svVG~vt~----e 600 (1320)
T KOG1907 534 EDNDLGATFDSRTFQLGD-------P-SMSPMEIWCAE-YQENYALLVKAEDLDILESICKRERCPVSVVGEVTG----E 600 (1320)
T ss_pred CCCCCCCEEEEEEEECCC-------C-CCCHHHHHHHH-HHHCCEEEECHHHHHHHHHHHHHCCCCEEEEEEECC----C
T ss_conf 666776179741354079-------8-77799986454-421523443798999999998742687268998726----7
Q ss_pred CEEEEEEEE
Q ss_conf 008996315
Q gi|254780569|r 347 PPILYQGSL 355 (357)
Q Consensus 347 ~~V~~~G~~ 355 (357)
.++.+.+++
T Consensus 601 qR~~l~d~~ 609 (1320)
T KOG1907 601 QRVILLDKL 609 (1320)
T ss_pred CEEEEECCC
T ss_conf 159982577
No 44
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=91.82 E-value=0.8 Score=26.05 Aligned_cols=273 Identities=21% Similarity=0.305 Sum_probs=161.1
Q ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC----C------CCCCEEEEECCCCC---CCCEEEEEECCCCCHHHH
Q ss_conf 8888908898999999999999988626735436----6------77731575655446---887189995688878999
Q gi|254780569|r 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIG----E------IGGFGGLFDLKKAG---FVDPILVSSSDGVGTKLK 75 (357)
Q Consensus 9 ~tY~~aGVdi~~~~~~v~~i~~~~~~t~~~~v~~----~------ig~f~~~~~l~~~~---~~~p~Lv~~tDGVGTK~~ 75 (357)
-.|+..==+-+...++.+.++.+=..+. ++... . +-.|||=|+|-+.. .|=|||=--|. |=..
T Consensus 634 ~~~~~~~~~~~l~~~~l~~~~~LNv~Sq-KGL~e~FDSsvG~gTvl~PlGGkyQLTP~~a~v~KlPVl~g~t~---tAS~ 709 (1279)
T TIGR01857 634 SVEKFKVSEETLEEKWLKVLKDLNVASQ-KGLVERFDSSVGAGTVLMPLGGKYQLTPTEASVAKLPVLGGETK---TASA 709 (1279)
T ss_pred CCCCEECCCHHHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC---CEEE
T ss_conf 4232113620478888765543012124-77521200341710213778886457702578732775788653---4024
Q ss_pred HHHHHCCC------CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCHHH--HH----HHHHHHHHHHHHHHCCCE
Q ss_conf 99982885------501688888543467885411----221100000332037--89----999999999999860952
Q gi|254780569|r 76 IAIETGKN------DTIGIDLVAMCVNDILTHGAE----PLFFLDYLATSQLNP--DQ----ATSIIKGIAAGCCQAGCA 139 (357)
Q Consensus 76 ia~~~~~~------~~ig~Dlvam~vNDi~~~GA~----Pl~fldyia~~~l~~--~~----~~~ii~gi~~~c~~~g~~ 139 (357)
+|+=.|-| -+=++-.|-=++-=|+++|+. =|.|.-|+ +||.. +. +..++-. .++=.+.|++
T Consensus 710 ~a~GFNPYi~~ws~yhGA~yaVvEs~AkLvAaG~~y~karLSFQEYF--EkL~~~~ekwgkP~aAlLGA-~~aQ~dLG~~ 786 (1279)
T TIGR01857 710 IAWGFNPYIAEWSPYHGAIYAVVESLAKLVAAGVDYKKARLSFQEYF--EKLDKDEEKWGKPFAALLGA-LKAQVDLGLP 786 (1279)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHH--HHCCCCCCCCCCHHHHHHHH-HHHHHHCCCC
T ss_conf 44166750135775023678889999999972897037886200223--32377751006708999889-9998870887
Q ss_pred ECCCCHHHCCCCCCCCCCC----EEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 2143010000013655663----368999974154211333455524899953865543232034444553115545667
Q gi|254780569|r 140 LIGGETAEMPGLYHDRDYD----LAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPS 215 (357)
Q Consensus 140 liGGETAemP~vy~~~~~D----lag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~ 215 (357)
=|||-= -|-|.+. +++ |+.|+|++++-.++|.++==+.|..|+-++. +.++.. -.
T Consensus 787 AIGGKD-SMSGtF~--dL~VPPTLisFAV~~~~~~~v~SpEFK~~~~~i~~i~~------------~~l~~~------~~ 845 (1279)
T TIGR01857 787 AIGGKD-SMSGTFE--DLDVPPTLISFAVATANVKRVISPEFKKAGEKIYLIEG------------KALEDD------LT 845 (1279)
T ss_pred CCCCCC-CCCCCCC--CCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCEEEEECC------------CCCCCC------CC
T ss_conf 668634-7750158--89887025534432431110236023302875887066------------202246------75
Q ss_pred CCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHCC
Q ss_conf 666663066875397201226888876304632222345420122012002-5443047871004898679999999669
Q gi|254780569|r 216 PISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA-IPAHLTASINLNSVEVPQIISWLSKKAH 294 (357)
Q Consensus 216 ~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~nL~Ri-Lp~gl~a~Id~~~~p~p~iF~~I~~~g~ 294 (357)
+ +...|.+-| ..+.+++..+ +|-+..-+-=||+.|.|..| |..-+|+.|+...
T Consensus 846 ~--d~~~lk~nf--------~~~~~~~~~~-kv~Sa~~~kyGG~~E~L~kmslGNriG~~~n~~~--------------- 899 (1279)
T TIGR01857 846 L--DSDELKENF--------EKIEELIKDH-KVVSASAVKYGGVAEALAKMSLGNRIGAELNNKE--------------- 899 (1279)
T ss_pred C--CHHHHHHHH--------HHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHCCCEEEEEECCHH---------------
T ss_conf 0--678899999--------9999840577-4799974460168898987401452337880767---------------
Q ss_pred CCHHHHHHHHCCCCCEEEEECHH-HHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 89889876524671169998689-89999999997799808999999778
Q gi|254780569|r 295 VKPAEVLRTFNCGIGMVIIVHPD-NKDCIIKKFQENNENIILIGEVTQRS 343 (357)
Q Consensus 295 I~~~EM~rtFNmGiGmvlvV~~e-~a~~v~~~l~~~g~~a~iIG~V~~~~ 343 (357)
--|=+=||+.| +|++-++++ +.+...+. ..+..||++++.-
T Consensus 900 --~ve~lf~~~~G-S~~~e~~e~~~L~~e~~~-----~~~~~~G~t~~~f 941 (1279)
T TIGR01857 900 --VVEDLFTLKYG-SFILEVKEDVKLEDELEL-----ANVEKIGETTKDF 941 (1279)
T ss_pred --HHHHHHCCCCC-CEEEECCCCCCCHHHHCC-----CCEEECCCEEEEE
T ss_conf --88765245746-478972677744445302-----2403414175202
No 45
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=88.58 E-value=0.71 Score=26.43 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=90.2
Q ss_pred CCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHH-HHHH--HHHH--HHCCCC-
Q ss_conf 7773157565544688718999568887899999982885501688888543-4678854-1122--1100--000332-
Q gi|254780569|r 44 IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCV-NDILTHG-AEPL--FFLD--YLATSQ- 116 (357)
Q Consensus 44 ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~v-NDi~~~G-A~Pl--~fld--yia~~~- 116 (357)
.-||.|.+=+. ++..+|-.-++--|+.|-+.+..+.+-|+. .|.|-+-| -|++|-| |-|+ -+-| |+.++.
T Consensus 79 ~~G~~gI~CVE-sGGPePGvGCAGRGIitai~~Le~lga~ed--~D~V~yDVLGDVVCGGFAmPir~g~A~evyIVtSge 155 (293)
T PRK13234 79 KIGYKGIKCVE-SGGPEPGVGCAGRGVITSINFLEENGAYDD--VDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGE 155 (293)
T ss_pred HCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 43779848976-899899888777131467888877187657--999999567766514755665458876899994671
Q ss_pred -HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCC----CC--CEEEEEEEEECCCCCCCCCCCCCCEEEEEECC
Q ss_conf -037899999999999998609522143010000013655----66--33689999741542113334555248999538
Q gi|254780569|r 117 -LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDR----DY--DLAGFAVGAVERKELLSPENVCAGDLILGLPS 189 (357)
Q Consensus 117 -l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~----~~--Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~S 189 (357)
...-....|.+++.+-....+|.| ||=..---++.... +| .+-.-.++.++++.++.-... .|-.+|-...
T Consensus 156 ~mslyAANnI~~~i~~~~~~g~~rl-gGlI~N~r~~~~e~~~v~~fa~~~gt~ii~~IPrs~~v~~aE~-~~~TviE~~P 233 (293)
T PRK13234 156 MMALYAANNIAKGILKYANSGGVRL-GGLICNERQTDRELELAEALAKRLGSKLIHFVPRDNIVQHAEL-RRMTVIEYAP 233 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEE-EEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH-CCCEEEEECC
T ss_conf 8799999999999999863269624-6899717898537999999999849937997799688999997-3977789688
Q ss_pred CCCCCCCCC-HHHHHHH
Q ss_conf 655432320-3444455
Q gi|254780569|r 190 SGLHSNGFA-LVRKIIS 205 (357)
Q Consensus 190 sG~HsNGyS-LvRkil~ 205 (357)
..-+++=|- |+|+|.+
T Consensus 234 ~s~~A~~Yr~LA~~I~~ 250 (293)
T PRK13234 234 DSKQAGEYRALAEKIHA 250 (293)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 98799999999999984
No 46
>pfam12389 Peptidase_M73 Camelysin metallo-endopeptidase.
Probab=86.00 E-value=0.46 Score=27.71 Aligned_cols=57 Identities=33% Similarity=0.469 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHCCCEECCCCH-HHCCCCCCCCCCCEEEEEEE----EECCCCCCCCCCCCCCEEEE
Q ss_conf 99999999999860952214301-00000136556633689999----74154211333455524899
Q gi|254780569|r 123 TSIIKGIAAGCCQAGCALIGGET-AEMPGLYHDRDYDLAGFAVG----AVERKELLSPENVCAGDLIL 185 (357)
Q Consensus 123 ~~ii~gi~~~c~~~g~~liGGET-AemP~vy~~~~~Dlag~~vG----~v~k~~ii~~~~i~~GD~II 185 (357)
+++--|++.| ..|.+||||-| |--.+. +.-=+.|+.| .+++..+|+-+++||||.|.
T Consensus 7 kKlgmGVaSA--aLGlsLiGGGTfAyFsD~----e~snnTFAAGTLDL~~~p~~ii~v~nLKPGD~i~ 68 (199)
T pfam12389 7 KKLGMGIASA--ALGAALIGGGTFAFFSDK----EVSNNTFAAGTLDLALDPKTLVDIKDLKPGDSVE 68 (199)
T ss_pred HHHHHHHHHH--HHHHHEECCCEEEEECCC----EEECCEEEEEEEECCCCCCEEEECCCCCCCCCEE
T ss_conf 5641669999--754316457237997041----4552256400442036874188713589986311
No 47
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=82.37 E-value=2.4 Score=22.66 Aligned_cols=153 Identities=22% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHH-HHHHH--HHHH--HCCC
Q ss_conf 77315756554468871899956888789999998288----55016888885434678854-11221--1000--0033
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGK----NDTIGIDLVAMCVNDILTHG-AEPLF--FLDY--LATS 115 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~----~~~ig~Dlvam~vNDi~~~G-A~Pl~--fldy--ia~~ 115 (357)
-||.|++=+.. +..+|-+-+..-|+-|-..+..+.+. +|-|=+|+ .-|+.|-| |-|+. +-|. +.++
T Consensus 78 ~g~~gv~cVEa-Ggp~pG~gcagrgii~~~~lle~~~~~~~~~D~Vl~Dv----LGdVvcGgFa~Pir~~~AdeV~IVts 152 (275)
T PRK13233 78 TGFKGIRCVES-GGPEPGVGCAGRGVITAITLMEEHGAYEDDLDFVFFDV----LGDVVCGGFAMPIRDGKAQEVYIVAS 152 (275)
T ss_pred CCCCCCEEEEC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 37898579868-99986665576312358888998097434688899841----56110555103431366888999946
Q ss_pred --CHHHHHHHHHHHHHHHHHHHCCCEECCC---------CHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf --2037899999999999998609522143---------01000001365566336899997415421133345552489
Q gi|254780569|r 116 --QLNPDQATSIIKGIAAGCCQAGCALIGG---------ETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI 184 (357)
Q Consensus 116 --~l~~~~~~~ii~gi~~~c~~~g~~liGG---------ETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~I 184 (357)
.-.-..+.+|.+++.+..+..++.+.|= |.. ++++-.=.+....+++++++..+..... .|-.+
T Consensus 153 ~E~msL~aannI~~~l~~~~~~~~~~l~Gii~N~r~~~~e~~----~v~~fa~~ig~~vi~~IPr~~~V~~Ae~-~~~tV 227 (275)
T PRK13233 153 GEMMALYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELE----LLEEFTDAIGTQLIHFVPRDNIVQKAEF-NKKTV 227 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHH----HHHHHHHHHCCCEEEECCCCHHHHHHHH-CCCEE
T ss_conf 837999999999999999850589638999971788860799----9999999859957997789778887787-39767
Q ss_pred EEECCCCCCCCCCC-HHHHHHHHH
Q ss_conf 99538655432320-344445531
Q gi|254780569|r 185 LGLPSSGLHSNGFA-LVRKIISLS 207 (357)
Q Consensus 185 Igl~SsG~HsNGyS-LvRkil~~~ 207 (357)
+-.......+.-|. |+|++++..
T Consensus 228 ie~~P~S~~A~~Y~~LAk~I~~n~ 251 (275)
T PRK13233 228 VEFDPTCNQAHEYKELARKIIENK 251 (275)
T ss_pred EEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 998999979999999999998589
No 48
>PRK13236 nitrogenase reductase; Reviewed
Probab=78.58 E-value=1.6 Score=23.88 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHH-HHHH--HHHH--HHCCCC--
Q ss_conf 773157565544688718999568887899999982885501688888543-4678854-1122--1100--000332--
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCV-NDILTHG-AEPL--FFLD--YLATSQ-- 116 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~v-NDi~~~G-A~Pl--~fld--yia~~~-- 116 (357)
-||.|..=+. ++..+|-.=++--||.|-+.+..+.+-|+. .|.|-.-| -|++|-| |-|+ -+-| |+.++.
T Consensus 82 ~G~~Gi~CvE-sGGPePGvGCAGRGIitai~lLee~ga~e~--~D~V~yDVLGDVVCGGFAmPir~g~A~evyiVtSge~ 158 (295)
T PRK13236 82 TGFRGVRCVE-SGGPEPGVGCAGRGIITAINFLEENGAYQD--LDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 158 (295)
T ss_pred CCCCCCEEEE-CCCCCCCCCCCCCEEEEHHHHHHHCCCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCH
T ss_conf 2658837987-899999898888625405667987198556--9989885057753267546566787648999956818
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCC---------CHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf 037899999999999998609522143---------01000001365566336899997415421133345
Q gi|254780569|r 117 LNPDQATSIIKGIAAGCCQAGCALIGG---------ETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENV 178 (357)
Q Consensus 117 l~~~~~~~ii~gi~~~c~~~g~~liGG---------ETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i 178 (357)
...-....|.+++.+-.+..++.|-|= |.+.....-. .+-.-.++.++++.++.....
T Consensus 159 malyAANNI~~~i~~~a~~g~~rlgGiI~N~r~~~~e~~~v~~fa~----~~gt~ii~~iPr~~~V~~ae~ 225 (295)
T PRK13236 159 MAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAK----RLNTQMIHFVPRDNIVQHAEL 225 (295)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH----HHCCCEEEECCCCHHHHHHHH
T ss_conf 8999999999999999742697035899607888747999999999----819926996578388889997
No 49
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=76.84 E-value=6.1 Score=19.89 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=14.7
Q ss_pred CCCEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 71169998689899999999977998
Q gi|254780569|r 307 GIGMVIIVHPDNKDCIIKKFQENNEN 332 (357)
Q Consensus 307 GiGmvlvV~~e~a~~v~~~l~~~g~~ 332 (357)
|--.+++.+++.+-...+.+++.|.+
T Consensus 287 Gkrvai~~~~~~~~~l~~~l~ElGm~ 312 (410)
T cd01968 287 GKKAALYTGGVKSWSLVSALQDLGME 312 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE
T ss_conf 98899964846889999999977998
No 50
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=74.75 E-value=4.1 Score=21.09 Aligned_cols=53 Identities=4% Similarity=0.032 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898679999999669898898765246711699986898999999999779980899
Q gi|254780569|r 280 VEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILI 336 (357)
Q Consensus 280 ~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iI 336 (357)
|.-..+|+.+++.+ ||-. +..+|-.+ -+..|+.+.++++.++|++.|.++.+.
T Consensus 14 ~lq~~vF~~lA~~~-ISvD-fINI~P~~--~vfTV~~~~~~ka~~iL~~lg~~p~v~ 66 (67)
T cd04914 14 DLQQRVFKALANAG-ISVD-LINVSPEE--VIFTVDGEVAEKAVDILEKMGLDPSVR 66 (67)
T ss_pred HHHHHHHHHHHHCC-CCEE-EEEECCCC--EEEEECHHHHHHHHHHHHHCCCCCEEE
T ss_conf 59999999999759-8578-99866774--799807788999999999869983750
No 51
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=73.35 E-value=1.5 Score=24.24 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=38.1
Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC-------CCCCH-HHHCCCCCCCCCEEEEE
Q ss_conf 66306687539720122688887630463222234-------54201-22012002544304787
Q gi|254780569|r 219 SEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAH-------ITGGG-LTENIPRAIPAHLTASI 275 (357)
Q Consensus 219 ~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ah-------ITGGG-l~~nL~RiLp~gl~a~I 275 (357)
+...+.|+|-+|=+-=+.+|...|++.. .-=.+| .|||| |++||.+.|.+..+.-+
T Consensus 248 ~s~ev~EaL~epv~~IV~aVk~tLE~tP-PELA~DIveRGiVLTGGGaLLrnLDk~lS~eTg~PV 311 (337)
T TIGR00904 248 NSVEVREALQEPVNQIVEAVKSTLEKTP-PELAADIVERGIVLTGGGALLRNLDKLLSKETGLPV 311 (337)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHCCEEEECCHHHHHCCCHHHHHHCCCCE
T ss_conf 6289999887368899999998751688-704657764693762630545210158777348636
No 52
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=73.03 E-value=1.4 Score=24.24 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHH-HHHHH--HHHH--HCCCC--
Q ss_conf 773157565544688718999568887899999982885501688888543-4678854-11221--1000--00332--
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCV-NDILTHG-AEPLF--FLDY--LATSQ-- 116 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~v-NDi~~~G-A~Pl~--fldy--ia~~~-- 116 (357)
-||.|++-+.. +..+|-.-+.--|+.|-+.+.++++.|+. ..|.|-.-| -|+.|-| |-|+. +-|. +.+..
T Consensus 73 ~g~~gi~cves-Ggpepg~gcagrgi~~~~~lLe~~~~~~~-~~D~vl~Dvlgdvvcggfa~Pir~~~Adev~IVts~e~ 150 (264)
T PRK13231 73 EGYNNTLCVES-GGPEPGVGCAGRGVIVAMNLLEKLGVFDN-DPDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEY 150 (264)
T ss_pred ECCCCEEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCCCCCEECCCCCCCCCEEEEEECCCH
T ss_conf 17898499737-99887766565217689899987264224-79879994358720566704554266988999947858
Q ss_pred HHHHHHHHHHHHHHHH-HHHCCCEE----CCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 0378999999999999-98609522----143010000013655663368999974154211333455524899953865
Q gi|254780569|r 117 LNPDQATSIIKGIAAG-CCQAGCAL----IGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSG 191 (357)
Q Consensus 117 l~~~~~~~ii~gi~~~-c~~~g~~l----iGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG 191 (357)
...-....|.+++... ++-.|+-+ ...|....-..-+ . +-...+|.++++..+... -..|..++-..-..
T Consensus 151 msLyaAnnI~~~i~~~~~rl~GiI~N~r~~~~e~~iv~~fa~--~--~g~~vl~~IPr~~~V~~a-e~~~~tVie~~P~S 225 (264)
T PRK13231 151 MSLYAANNIAKGIKKLKGKLGGIICNCRNVKNEVEIVSEFAS--L--IGSRIIGIIPRSNLVQES-ELKASTVVETFPES 225 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH--H--CCCCEEEECCCCHHHHHH-HHCCCEEEEECCCC
T ss_conf 999999999999999546442089606898877999999999--7--199689966894788888-86297589979898
Q ss_pred CCCCCCC-HHHHHHHHH
Q ss_conf 5432320-344445531
Q gi|254780569|r 192 LHSNGFA-LVRKIISLS 207 (357)
Q Consensus 192 ~HsNGyS-LvRkil~~~ 207 (357)
.+++-|- |+|++++..
T Consensus 226 ~~A~~Yr~LA~~I~~~~ 242 (264)
T PRK13231 226 SQASIYSELANNIMNNQ 242 (264)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 89999999999998589
No 53
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=70.87 E-value=5.1 Score=20.40 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCC
Q ss_conf 9999999999986095221430100000136556
Q gi|254780569|r 123 TSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD 156 (357)
Q Consensus 123 ~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~ 156 (357)
...++++.+-|++.|+.||==|. +.|+.+.+.
T Consensus 210 ~~yl~~lr~lc~~~gillI~DEV--~TGfGRtG~ 241 (404)
T PRK00854 210 AGYFRRVRELCTANNVTLILDEI--QTGLGRTGK 241 (404)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCC
T ss_conf 89999999999970764457500--017863557
No 54
>TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972 This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes. The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . .
Probab=63.77 E-value=11 Score=18.09 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=59.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCC--CCCC-CCCCCCCCHHHHCCCCCC-----CCCEEEEECCCCC----CCCHHHHHHH
Q ss_conf 66875397201226888876304--6322-223454201220120025-----4430478710048----9867999999
Q gi|254780569|r 223 LGETLLTPTRIYVSPLLKILRKT--GKIK-ALAHITGGGLTENIPRAI-----PAHLTASINLNSV----EVPQIISWLS 290 (357)
Q Consensus 223 l~e~LL~PtriY~~~i~~ll~~~--~~i~-~~ahITGGGl~~nL~RiL-----p~gl~a~Id~~~~----p~p~iF~~I~ 290 (357)
|.+.=|+|.-+| |=|.++|... .++| |+| -=.+|-|+|| .+-+.+.+|...+ |=|+||-.-+
T Consensus 83 LlD~~lTp~d~L-PGi~~lL~~Lk~~~ikialA-----SaSkNA~~vLekL~L~~~Fd~IvDp~~~~~gKPdPEIFL~AA 156 (190)
T TIGR01990 83 LLDKELTPEDVL-PGIKSLLEDLKKKNIKIALA-----SASKNAPTVLEKLELRDYFDAIVDPAEIKKGKPDPEIFLAAA 156 (190)
T ss_pred HHHCCCCHHHHC-CCHHHHHHHHHHCCCCEEEE-----EHHHHHHHHHHHHHHHHCCCEEECHHHHCCCCCCHHHHHHHH
T ss_conf 975068986604-01899999999848948873-----023448999998214220422645456217877867999999
Q ss_pred HHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEE
Q ss_conf 96698988987652467116999868989999999997799808
Q gi|254780569|r 291 KKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENII 334 (357)
Q Consensus 291 ~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~ 334 (357)
+..+|+|+| |+.| ||++.=+..+++.|+-|.
T Consensus 157 ~~LGv~P~~-----------cigi--EDA~AGI~ai~~aGm~av 187 (190)
T TIGR01990 157 EGLGVSPEE-----------CIGI--EDAQAGIEAIKAAGMFAV 187 (190)
T ss_pred HHCCCCHHH-----------HHHE--ECHHHHHHHHHHCCCEEE
T ss_conf 763897557-----------0101--225899999997595377
No 55
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=61.90 E-value=10 Score=18.28 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=32.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCC------H-HHHCCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 6687539720122688887630463-2222345420------1-2201200254-4304787100489867999999966
Q gi|254780569|r 223 LGETLLTPTRIYVSPLLKILRKTGK-IKALAHITGG------G-LTENIPRAIP-AHLTASINLNSVEVPQIISWLSKKA 293 (357)
Q Consensus 223 l~e~LL~PtriY~~~i~~ll~~~~~-i~~~ahITGG------G-l~~nL~RiLp-~gl~a~Id~~~~p~p~iF~~I~~~g 293 (357)
+...+..+..+=.+.+++.|++... |.| .||||| | |..-+..+-. -|+.+.+|.+- ..|..++-+-++|
T Consensus 38 ~~~~~~~~~~~~~e~~~~~L~~R~~ll~g-VVitGGEptlQ~~eL~d~~~~v~~nlGf~vkLdTNG-~~P~~L~~ll~~g 115 (220)
T TIGR02495 38 LLIPRKGSGEIELEELLEFLRRRQGLLDG-VVITGGEPTLQAGELGDFLREVRENLGFEVKLDTNG-SNPRVLEELLEEG 115 (220)
T ss_pred CHHHHCCCCCCCHHHHHHHHHHCCCCEEE-EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHCC
T ss_conf 40020057610277799998731342105-787287532367778999999998659278560678-8678999998604
Q ss_pred CCCH
Q ss_conf 9898
Q gi|254780569|r 294 HVKP 297 (357)
Q Consensus 294 ~I~~ 297 (357)
=|++
T Consensus 116 LvD~ 119 (220)
T TIGR02495 116 LVDY 119 (220)
T ss_pred CCCE
T ss_conf 8757
No 56
>KOG0479 consensus
Probab=61.89 E-value=9.2 Score=18.61 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=37.0
Q ss_pred HHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEE--EEE-CCCCCCCCCCCHH--HHHHHHHCC
Q ss_conf 000001365566336899997415421133345552489--995-3865543232034--444553115
Q gi|254780569|r 146 AEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI--LGL-PSSGLHSNGFALV--RKIISLSQL 209 (357)
Q Consensus 146 AemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~I--Igl-~SsG~HsNGySLv--Rkil~~~~~ 209 (357)
-|||-.-++|.+-= .|-++-.+.+++ ++||||.+ +|+ .|-+..|||++.. |-++-.+.+
T Consensus 200 QEmPE~APaGQLPR---SVDvilddDLVD--~~KPGDRV~ivG~yr~Lp~k~~g~tsg~FRTvliaNni 263 (818)
T KOG0479 200 QEMPEKAPAGQLPR---SVDVILDDDLVD--RVKPGDRVNIVGIYRSLPGKSNGNTSGTFRTVLIANNI 263 (818)
T ss_pred EECCCCCCCCCCCC---CEEEEECCCCCC--CCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCH
T ss_conf 00656689878985---322773454001--47888736899988525676688465414899984337
No 57
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=61.45 E-value=13 Score=17.64 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=6.0
Q ss_pred CCCEEEEEECCCCCCC
Q ss_conf 5524899953865543
Q gi|254780569|r 179 CAGDLILGLPSSGLHS 194 (357)
Q Consensus 179 ~~GD~IIgl~SsG~Hs 194 (357)
.+.|.-.+.++|-++.
T Consensus 167 ~~~e~~F~YR~S~f~~ 182 (305)
T PRK12436 167 TKEAFEFGYRKSVFAN 182 (305)
T ss_pred CHHHCCCCCCCCCCCC
T ss_conf 6899175645676778
No 58
>TIGR02630 xylose_isom_A xylose isomerase; InterPro: IPR013452 Xylose isomerase (5.3.1.5 from EC) is an enzyme which interconverts D-xylose and D-xylulose.; GO: 0009045 xylose isomerase activity.
Probab=61.24 E-value=7.4 Score=19.28 Aligned_cols=85 Identities=26% Similarity=0.448 Sum_probs=59.2
Q ss_pred CCCHHHH--HHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHH-----------------HHH
Q ss_conf 7201226--888876304632222345420122012002544304787100489867999-----------------999
Q gi|254780569|r 230 PTRIYVS--PLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIIS-----------------WLS 290 (357)
Q Consensus 230 PtriY~~--~i~~ll~~~~~i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~p~p~iF~-----------------~I~ 290 (357)
||-+|-. ...++|+..+ +|-||| |..|.+.+.|+.+-.+|- .|.
T Consensus 310 Ptd~y~~tlaMyevl~~GG-------l~~GGl----------NFDAKvRR~S~~~~DLf~aHIaGMDtfA~GLk~A~~l~ 372 (437)
T TIGR02630 310 PTDVYETTLAMYEVLKNGG-------LTTGGL----------NFDAKVRRESFDPEDLFLAHIAGMDTFARGLKVAAKLL 372 (437)
T ss_pred CCCHHHHHHHHHHHHHCCC-------CCCCCC----------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6767899999999997178-------668886----------65435576788533577676889999999999999987
Q ss_pred HHCCCC--HHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 966989--88987652467116999868989999999997799
Q gi|254780569|r 291 KKAHVK--PAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNE 331 (357)
Q Consensus 291 ~~g~I~--~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~ 331 (357)
+.|.++ -+|=|+.||-|||.-+.--+.+.+++.+...+.+.
T Consensus 373 ~dg~L~~~~~~RY~s~~~g~G~~I~~G~~~l~~L~~ya~~~~~ 415 (437)
T TIGR02630 373 EDGFLDKIVAERYSSFNSGIGAEIEAGKTDLESLEKYALEKGD 415 (437)
T ss_pred HCCCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 2484226899751442513468887147888899999827898
No 59
>PRK12377 putative replication protein; Provisional
Probab=58.98 E-value=8.3 Score=18.94 Aligned_cols=10 Identities=10% Similarity=0.425 Sum_probs=4.7
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999977
Q gi|254780569|r 320 DCIIKKFQEN 329 (357)
Q Consensus 320 ~~v~~~l~~~ 329 (357)
++++..|..+
T Consensus 216 dailDRL~~h 225 (248)
T PRK12377 216 ERVMDRMTMN 225 (248)
T ss_pred HHHHHHHHHC
T ss_conf 9999999866
No 60
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=58.85 E-value=4.3 Score=20.97 Aligned_cols=127 Identities=26% Similarity=0.333 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHH-HHHHH--HHHHH--CCC-C
Q ss_conf 7773157565544688718999568887899999982885501688888543-4678854-11221--10000--033-2
Q gi|254780569|r 44 IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCV-NDILTHG-AEPLF--FLDYL--ATS-Q 116 (357)
Q Consensus 44 ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~v-NDi~~~G-A~Pl~--fldyi--a~~-~ 116 (357)
.-||+|..=.. ++..+|=.=++--||.|-+.+...++-|+.- +|.|---| -|++|-| |-|+- +-|++ .++ .
T Consensus 76 ~~Gf~gv~CVE-sGGPepGvGCAGRGVitai~~Le~lgaf~~~-~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge 153 (278)
T COG1348 76 FTGFGGVKCVE-SGGPEPGVGCAGRGVITAINLLEELGAFEED-LDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGE 153 (278)
T ss_pred ECCCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEECCCCEEECCEEEEHHCCCCCEEEEEECCC
T ss_conf 20678537742-5998999884651199999999981873012-878999535773474600020026663799995683
Q ss_pred HH-HHHHHHHHHHHHHHHHHCCCEECCC---------CHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 03-7899999999999998609522143---------010000013655663368999974154211333
Q gi|254780569|r 117 LN-PDQATSIIKGIAAGCCQAGCALIGG---------ETAEMPGLYHDRDYDLAGFAVGAVERKELLSPE 176 (357)
Q Consensus 117 l~-~~~~~~ii~gi~~~c~~~g~~liGG---------ETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~ 176 (357)
.. .=....|.+||.+-++..++.|-|= |-..++...+ -+-.-.++.|++++++...
T Consensus 154 ~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsR~~~~e~e~v~~fa~----~igt~li~~vPr~~ivq~a 219 (278)
T COG1348 154 MMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAE----RLGTQLIHFVPRDNIVQKA 219 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH----HHCCCEEEECCCHHHHHHH
T ss_conf 58999988999999998733796314577457776437999999999----8488527633512788999
No 61
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor; InterPro: IPR006548 These sequences represent the ELAV/HuD subfamily of splicing factors found in metazoa. HuD stands for the human paraneoplastic encephalomyelitis antigen D of which there are 4 variants in human . ELAV stands for the Drosophila Embryonic lethal abnormalvisual protein . ELAV-like splicing factors are also known in human as HuB (ELAV-like protein 2), HuC (ELAV-like protein 3, Paraneoplastic cerebellar degeneration-associated antigen) and HuR (ELAV-like protein 1). These genes are most closely related to the sex-lethal subfamily of splicing factors found in Dipteran insects (IPR006546 from INTERPRO). ; GO: 0003723 RNA binding.
Probab=58.80 E-value=6.4 Score=19.74 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=15.3
Q ss_pred CCCEEEEECHHHHHHHHHHHH
Q ss_conf 711699986898999999999
Q gi|254780569|r 307 GIGMVIIVHPDNKDCIIKKFQ 327 (357)
Q Consensus 307 GiGmvlvV~~e~a~~v~~~l~ 327 (357)
||||+=+=.+++||++++.|+
T Consensus 150 GVGFiRFDkr~EA~~AIk~LN 170 (436)
T TIGR01661 150 GVGFIRFDKREEADRAIKELN 170 (436)
T ss_pred CCEEEECCCHHHHHHHHHHHC
T ss_conf 711476176678999999846
No 62
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361 This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=58.07 E-value=3.3 Score=21.73 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=20.5
Q ss_pred HHHCCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 65246711699986898999999999
Q gi|254780569|r 302 RTFNCGIGMVIIVHPDNKDCIIKKFQ 327 (357)
Q Consensus 302 rtFNmGiGmvlvV~~e~a~~v~~~l~ 327 (357)
-+||.|+|..-=+|+|+++.+++..+
T Consensus 325 yIFNLGHGilP~~p~E~v~~lve~Vh 350 (351)
T TIGR01464 325 YIFNLGHGILPETPPENVKALVEYVH 350 (351)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 58765777889989799999999852
No 63
>pfam04558 tRNA_synt_1c_R1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1. This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function.
Probab=58.02 E-value=14 Score=17.25 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHCC--CCHHHHHHHHCCCCCEEEEECHHHHHHHH-HHHHH
Q ss_conf 8679999999669--89889876524671169998689899999-99997
Q gi|254780569|r 282 VPQIISWLSKKAH--VKPAEVLRTFNCGIGMVIIVHPDNKDCII-KKFQE 328 (357)
Q Consensus 282 ~p~iF~~I~~~g~--I~~~EM~rtFNmGiGmvlvV~~e~a~~v~-~~l~~ 328 (357)
+-.-|+|+...+. ++..+|.+ .||||-+ |+||+.++.+ +.+.+
T Consensus 87 v~aA~~Yl~~~~~~~id~~~fe~--~cGVGV~--VT~eqI~~~V~~~i~~ 132 (164)
T pfam04558 87 VDAALKYLKSNGSEAFDVAEFEE--ACGVGVV--VTPEDVERAVADYIEE 132 (164)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHH--HCCCCEE--ECHHHHHHHHHHHHHH
T ss_conf 99999999977998888899999--7799868--8899999999999999
No 64
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=56.21 E-value=6.6 Score=19.61 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=85.0
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHH-HHHHHHHHHH--CC-CCHH-
Q ss_conf 7731575655446887189995688878999999828855016888885-434678854-1122110000--03-3203-
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAM-CVNDILTHG-AEPLFFLDYL--AT-SQLN- 118 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam-~vNDi~~~G-A~Pl~fldyi--a~-~~l~- 118 (357)
-||.|++-+.. +..+|-.-+.--|+.|-+.+..+++-|+.. |.|-. +.-|+.|.| |-|+.+-|.+ .+ +...
T Consensus 76 ~G~~gi~cvEa-GGPepGvGCaGrgi~~~i~lL~~l~~~~d~--D~V~yDvlgDVVCGGFa~Pi~~Ad~~~iVts~e~ma 152 (271)
T CHL00072 76 KGYGGVDCVEA-GGPPAGAGCGGYVVGETVKLLKELNAFYEY--DVILFDVLGDVVCGGFAAPLNYADYCIIITDNGFDA 152 (271)
T ss_pred CCCCCCEEEEC-CCCCCCCCCCCCCCHHHHHHHHHCCCCCCC--CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 27788466543-899988777886519999999973762138--889994477655654567500088899995670889
Q ss_pred HHHHHHHHHHHHHHHHHCCCEECCC------CHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 7899999999999998609522143------0100000136556633689999741542113334555248999538655
Q gi|254780569|r 119 PDQATSIIKGIAAGCCQAGCALIGG------ETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGL 192 (357)
Q Consensus 119 ~~~~~~ii~gi~~~c~~~g~~liGG------ETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~ 192 (357)
.-....|.+++.+..+..++.|-|= ++..+-...+. +..-.+|.|+++..+..+..+ |-.+|=..-+-.
T Consensus 153 lyaANnI~~~i~~~a~~~~~rl~GiI~N~~~~~~~v~~fa~~----~g~~~i~~iPrd~~V~~ae~~-~~TviE~~p~s~ 227 (271)
T CHL00072 153 LFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYVEA----CPMPVLEVLPLIEDIRVSRVK-GKTLFEMAESEP 227 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHC-CCCEEECCCCCH
T ss_conf 999999999999973046864443652268837899999997----399669856871166899974-882042289982
Q ss_pred C----CCCCC-HHHHHHHHH
Q ss_conf 4----32320-344445531
Q gi|254780569|r 193 H----SNGFA-LVRKIISLS 207 (357)
Q Consensus 193 H----sNGyS-LvRkil~~~ 207 (357)
. ++-|- |+|+++...
T Consensus 228 ~~~~~~~~Yr~LA~~I~~n~ 247 (271)
T CHL00072 228 SLNYVCDFYLNIADQLLSQP 247 (271)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 47899999999999997399
No 65
>PRK03072 heat shock protein HtpX; Provisional
Probab=56.13 E-value=14 Score=17.32 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 378999999999999986095221430100000136556633689999741542
Q gi|254780569|r 118 NPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171 (357)
Q Consensus 118 ~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ 171 (357)
+++..-++.+-+.+-|+++|++ ||.+|--+.-....|++|.-+++.
T Consensus 65 ~~~e~p~L~~~V~~la~~agip--------~P~v~i~~~~~pNAFAtG~~~~~a 110 (289)
T PRK03072 65 SELQAPAMYRIVRELSTAAHQP--------MPRLYISPTMAPNAFATGRNPRNA 110 (289)
T ss_pred CHHHCHHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCEEEECCCCCCE
T ss_conf 8103679999999999976989--------991799549997558842798886
No 66
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=54.36 E-value=16 Score=16.84 Aligned_cols=60 Identities=12% Similarity=0.324 Sum_probs=34.2
Q ss_pred HCCCCHHHHHHHHHHHHHHH--HHHHCCCEECCCCH-----HHCCCCCCCCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 00332037899999999999--99860952214301-----0000013655663368999974154211333
Q gi|254780569|r 112 LATSQLNPDQATSIIKGIAA--GCCQAGCALIGGET-----AEMPGLYHDRDYDLAGFAVGAVERKELLSPE 176 (357)
Q Consensus 112 ia~~~l~~~~~~~ii~gi~~--~c~~~g~~liGGET-----AemP~vy~~~~~Dlag~~vG~v~k~~ii~~~ 176 (357)
|+.|+..-+.-+|+-+.+.. .-+--+..+|||++ |-+---+....+++- +||+ +| -|||+
T Consensus 144 iGSGRtKI~T~Eq~~~al~~~k~l~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t~--viGV-PK--TIDGD 210 (566)
T TIGR02477 144 IGSGRTKIETEEQFAKALETAKKLKLDGLVIIGGDDSNTNAALLAEYFAKKGLKTQ--VIGV-PK--TIDGD 210 (566)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCE--EEEE-EC--CCCHH
T ss_conf 01685455688899999999876089648997479867999999999997389922--7864-02--54721
No 67
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011827 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry is most closely related to the 3-isopropylmalate dehydratase IPR004431 from INTERPRO. It also includes members, which cluster with other genes of leucine biosynthesis. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=54.32 E-value=5.4 Score=20.27 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=22.8
Q ss_pred HCCCCCCC-CC-CC-EEEEEEEEECCCCCCCCCCCCCCEEEE-----EECCC
Q ss_conf 00001365-56-63-368999974154211333455524899-----95386
Q gi|254780569|r 147 EMPGLYHD-RD-YD-LAGFAVGAVERKELLSPENVCAGDLIL-----GLPSS 190 (357)
Q Consensus 147 emP~vy~~-~~-~D-lag~~vG~v~k~~ii~~~~i~~GD~II-----gl~Ss 190 (357)
..||=|-. .. ++ ||-.|.-=++++ -.++++|||+|+ |.+||
T Consensus 15 IIPGrYLR~~~D~~eLA~haM~g~~Pe---F~~kvr~GDviVAGkNFGcGSS 63 (159)
T TIGR02087 15 IIPGRYLRTTDDPDELASHAMEGIDPE---FAKKVREGDVIVAGKNFGCGSS 63 (159)
T ss_pred ECCCCCCCCCCCHHHHHHHCCCCCCCC---HHHHCCCCCEEEECCCCCCCCC
T ss_conf 458522575477788998705589963---1340789978871416477887
No 68
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.08 E-value=17 Score=16.81 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=20.8
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 8999538655432320344445531155456
Q gi|254780569|r 183 LILGLPSSGLHSNGFALVRKIISLSQLSWKD 213 (357)
Q Consensus 183 ~IIgl~SsG~HsNGySLvRkil~~~~~~~~~ 213 (357)
++++-...-.|..|-.+++..|+..+....+
T Consensus 2 vliak~g~DgHd~G~~iva~~l~d~GfeVi~ 32 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIY 32 (122)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7999647862287799999999978976996
No 69
>KOG0125 consensus
Probab=53.06 E-value=17 Score=16.83 Aligned_cols=55 Identities=22% Similarity=0.406 Sum_probs=30.9
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHCC----CCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 679999999669898898765246----7116999868989999999997799808999999778
Q gi|254780569|r 283 PQIISWLSKKAHVKPAEVLRTFNC----GIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 (357)
Q Consensus 283 p~iF~~I~~~g~I~~~EM~rtFNm----GiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V~~~~ 343 (357)
|++-....+.|.|.+-|. +||- |.|||-.=.++++|++.+.|... .+=|+.+|-+
T Consensus 111 pDL~aMF~kfG~VldVEI--IfNERGSKGFGFVTmen~~dadRARa~LHgt----~VEGRkIEVn 169 (376)
T KOG0125 111 PDLRAMFEKFGKVLDVEI--IFNERGSKGFGFVTMENPADADRARAELHGT----VVEGRKIEVN 169 (376)
T ss_pred CCHHHHHHHHCCEEEEEE--EECCCCCCCCCEEEECCHHHHHHHHHHHHCC----EEECEEEEEE
T ss_conf 009999985175046899--8636777752348722824689999985046----4301278874
No 70
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.65 E-value=11 Score=18.09 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 888543467885411221100000332037--8999999999999986095221
Q gi|254780569|r 90 LVAMCVNDILTHGAEPLFFLDYLATSQLNP--DQATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 90 lvam~vNDi~~~GA~Pl~fldyia~~~l~~--~~~~~ii~gi~~~c~~~g~~li 141 (357)
+...+|..+--+||.-+-||-|+....-+. +.-..+++-+.+.|+..+++.+
T Consensus 106 i~~wSv~rik~~GadAvK~L~yy~pD~~~~in~~k~~~Verig~eC~~~dipf~ 159 (324)
T PRK12399 106 LDVWSAKRIKEEGADAVKFLLYYDVDEDDEINEQKKAYIERIGSECVAEDIPFF 159 (324)
T ss_pred CCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 344589999970657388999977999778889999999999999997699715
No 71
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=51.46 E-value=18 Score=16.53 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHCCCEEC
Q ss_conf 99999999999986095221
Q gi|254780569|r 122 ATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 122 ~~~ii~gi~~~c~~~g~~li 141 (357)
+.++++.+..-|++.+|+++
T Consensus 166 i~~i~~~Lk~lAke~~v~Vi 185 (271)
T cd01122 166 LDEIMTKLRGFATEHGIHIT 185 (271)
T ss_pred HHHHHHHHHHHHHHHCCCEE
T ss_conf 99999999999999799779
No 72
>pfam00162 PGK Phosphoglycerate kinase.
Probab=51.13 E-value=8.1 Score=19.00 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999988
Q gi|254780569|r 22 NRTVTQIKSAVK 33 (357)
Q Consensus 22 ~~~v~~i~~~~~ 33 (357)
.+....|+.+.+
T Consensus 34 ~~~~pTI~~Ll~ 45 (383)
T pfam00162 34 RAALPTIKYLLE 45 (383)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 73
>PRK05588 histidinol-phosphatase; Provisional
Probab=51.11 E-value=18 Score=16.50 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC---C------CH--------HH-HCCCCCCCCCEEEEECCCCC-------CCCHHHH
Q ss_conf 12268888763046322223454---2------01--------22-01200254430478710048-------9867999
Q gi|254780569|r 233 IYVSPLLKILRKTGKIKALAHIT---G------GG--------LT-ENIPRAIPAHLTASINLNSV-------EVPQIIS 287 (357)
Q Consensus 233 iY~~~i~~ll~~~~~i~~~ahIT---G------GG--------l~-~nL~RiLp~gl~a~Id~~~~-------p~p~iF~ 287 (357)
-|...+++.+++.....-++|+. . +. +. +.|..+..+|...+|+.+.+ |.+++++
T Consensus 125 ~Yf~~~~~~~~~~~~fdvlgHlD~i~r~~~~~~~~~~~~~~~~~i~~il~~i~~~g~~lEiNTsgl~~~~~~~~~~~i~~ 204 (256)
T PRK05588 125 IYFENMLKCLEKYDFIDSLGHIDYICRYAKYEDKEIYYDEFKEIIDEILKVLIEKGKVLEINTRRLDHKTAFENLVKIYK 204 (256)
T ss_pred HHHHHHHHHHHHCCCCCEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99999999998359986632525897726788754557788999999999999869859986523478988788799999
Q ss_pred HHHHHCCCCHHHHHHHHCCCCCEEEEEC----H----HHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 9999669898898765246711699986----8----98999999999779980899999977
Q gi|254780569|r 288 WLSKKAHVKPAEVLRTFNCGIGMVIIVH----P----DNKDCIIKKFQENNENIILIGEVTQR 342 (357)
Q Consensus 288 ~I~~~g~I~~~EM~rtFNmGiGmvlvV~----~----e~a~~v~~~l~~~g~~a~iIG~V~~~ 342 (357)
+.++.|+. .+.+-| | .+.+++.+.|++.|++ . + ...++
T Consensus 205 ~~~elGG~--------------~itiGSDAH~p~~vg~~f~~a~~ll~~~Gf~-~-v-~F~~R 250 (256)
T PRK05588 205 RFYELGGK--------------YITLGSDSHNIEDIGNNFKNALEIAEYCNLK-P-V-YFKNR 250 (256)
T ss_pred HHHHHCCC--------------EEEEECCCCCHHHHHHHHHHHHHHHHHCCCE-E-E-EEECC
T ss_conf 99985994--------------7997279898899886399999999985998-9-9-99387
No 74
>TIGR02049 gshA_ferroox glutamate--cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase..
Probab=49.24 E-value=9.4 Score=18.56 Aligned_cols=183 Identities=14% Similarity=0.195 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCC----CCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
Q ss_conf 777315756554468871899956888789999998288----55016888885434------67885411221100000
Q gi|254780569|r 44 IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGK----NDTIGIDLVAMCVN------DILTHGAEPLFFLDYLA 113 (357)
Q Consensus 44 ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~----~~~ig~Dlvam~vN------Di~~~GA~Pl~fldyia 113 (357)
--.|=+-.||-+++|| .+..| +|. |.++.-...+|-|. .=+|-+||-+..
T Consensus 23 ~pPFY~SvDLRNaGyK----l~PVD-----------~NLFpaGFNNL~pe~~~La~~ai~~y~~r~~~~ak~vLl----- 82 (436)
T TIGR02049 23 TPPFYSSVDLRNAGYK----LAPVD-----------TNLFPAGFNNLNPEFLPLAARAIQSYLKRHCPDAKKVLL----- 82 (436)
T ss_pred CCCCEEEEEHHCCCCC----CCCCC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC-----
T ss_conf 8781121202006760----14310-----------356764545666326999999999999874013253002-----
Q ss_pred CCCH-HH-HHHHHHHHHHHHHHHHCCCEE-CCCCHHHCCCCCCCCCCCEEEEEEE-EECCCCCCCCCCCCCCEEEEEECC
Q ss_conf 3320-37-899999999999998609522-1430100000136556633689999-741542113334555248999538
Q gi|254780569|r 114 TSQL-NP-DQATSIIKGIAAGCCQAGCAL-IGGETAEMPGLYHDRDYDLAGFAVG-AVERKELLSPENVCAGDLILGLPS 189 (357)
Q Consensus 114 ~~~l-~~-~~~~~ii~gi~~~c~~~g~~l-iGGETAemP~vy~~~~~Dlag~~vG-~v~k~~ii~~~~i~~GD~IIgl~S 189 (357)
.+.- -. .-.-|=|.-+.+-.+.||-.. +|-= .+.++++..||+. .| .+--+-++ ++-.-|...+.
T Consensus 83 IPEnhTRN~fYlenV~~l~~iL~~AG~evR~GsL---~~ev~ePT~~~~~---~g~~~~~epL~---riGT~Drrl~~-- 151 (436)
T TIGR02049 83 IPENHTRNKFYLENVARLEEILRLAGLEVRLGSL---YNEVKEPTELDLP---YGTKLLLEPLL---RIGTKDRRLTT-- 151 (436)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECC---CCCCCCCCCCCCC---CCCEEEECCCC---CCCCCCCEECC--
T ss_conf 6670001134688899999999865840464145---4245687430447---88878762432---11567760014--
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHC------
Q ss_conf 655432320344445531155456676666630668753972012268888763-0463222234542012201------
Q gi|254780569|r 190 SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILR-KTGKIKALAHITGGGLTEN------ 262 (357)
Q Consensus 190 sG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~-~~~~i~~~ahITGGGl~~n------ 262 (357)
+ ||+-- -||..+ +++.- +|.+|+=++ +.. +-..+ +||..-
T Consensus 152 ~-----GF~p~-~ilLNn--DLs~g--------------------iPdiL~~~~eQ~i-lPpl~----~GW~~RrK~~hF 198 (436)
T TIGR02049 152 D-----GFDPC-VILLNN--DLSAG--------------------IPDILKGIKEQDI-LPPLH----AGWRSRRKSNHF 198 (436)
T ss_pred C-----CCCCC-EEEECC--CCCCC--------------------CCHHHCCCCCCCC-CCCCC----CCCCCCCHHHHH
T ss_conf 6-----77742-688426--34478--------------------7667757752621-58753----565444112678
Q ss_pred -CCCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf -2002544304787100489867999999
Q gi|254780569|r 263 -IPRAIPAHLTASINLNSVEVPQIISWLS 290 (357)
Q Consensus 263 -L~RiLp~gl~a~Id~~~~p~p~iF~~I~ 290 (357)
.-+-+.+.++-.|+.|.|-+-|+|+-++
T Consensus 199 ~~Y~~vA~efa~~i~IDPWli~p~f~~c~ 227 (436)
T TIGR02049 199 EAYQEVASEFAKLIGIDPWLINPYFEKCD 227 (436)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCC
T ss_conf 99999999986441778442120000106
No 75
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=48.66 E-value=6 Score=19.92 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=36.0
Q ss_pred CCEEE-EEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 87189-99568887899999982885501688888543467885411221100000--33-2037899999999999998
Q gi|254780569|r 59 VDPIL-VSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLA--TS-QLNPDQATSIIKGIAAGCC 134 (357)
Q Consensus 59 ~~p~L-v~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia--~~-~l~~~~~~~ii~gi~~~c~ 134 (357)
+.|++ +.+--=|-||+.+...+-. .|+.|+.-|+---.||-+-. +| ++-++...+..+.+.+.|+
T Consensus 188 ~rP~~aIiGGaKisdKi~vi~~l~~-----------k~D~iiiGG~mantFL~A~G~~iG~sl~e~~~~~~a~~il~~a~ 256 (397)
T cd00318 188 ERPFVAILGGAKVSDKIQVIENLLD-----------KVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAK 256 (397)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHH-----------HCCEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8974999728862157999999998-----------47889976099999999769977865567577999999999987
Q ss_pred HCCCEEC
Q ss_conf 6095221
Q gi|254780569|r 135 QAGCALI 141 (357)
Q Consensus 135 ~~g~~li 141 (357)
+.+|.++
T Consensus 257 ~~~~~I~ 263 (397)
T cd00318 257 AKGVKIV 263 (397)
T ss_pred HCCCEEE
T ss_conf 5498486
No 76
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=48.30 E-value=20 Score=16.20 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHCC---------CCHHH-HHHHHCCCCCEEE--EECHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 04898679999999669---------89889-8765246711699--9868989999999997799808999999778
Q gi|254780569|r 278 NSVEVPQIISWLSKKAH---------VKPAE-VLRTFNCGIGMVI--IVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 (357)
Q Consensus 278 ~~~p~p~iF~~I~~~g~---------I~~~E-M~rtFNmGiGmvl--vV~~e~a~~v~~~l~~~g~~a~iIG~V~~~~ 343 (357)
+.-|+|+++++|.+.|+ |++-+ ..+...||.--+. +.+++++.++.+.-++.|.+++++|-=+.+-
T Consensus 123 ~TtPIpevi~~Ie~~ggiVLd~~tA~IDq~~Gv~~Aie~Gyk~IaVTV~~~~~a~~iRele~~~~~~~~if~VHtTGi 200 (259)
T TIGR03275 123 ETSPIPEVIEKIEDEGGIVLDPDTATIDQIKGVEKAIELGYKKIAVTVADAEDAKAIRELESESGIDIIIFAVHTTGI 200 (259)
T ss_pred ECCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 356529999999876988966765513477789999972875589994588889999975224698489999966899
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=47.84 E-value=21 Score=16.16 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=12.0
Q ss_pred CCCCCEEEEEECCCCCCCCC-CCHHHHH
Q ss_conf 45552489995386554323-2034444
Q gi|254780569|r 177 NVCAGDLILGLPSSGLHSNG-FALVRKI 203 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG~HsNG-ySLvRki 203 (357)
+|+||+.+.-++-||- | -||.|-+
T Consensus 24 ~i~~GE~~~~IG~SGA---GKSTLLR~i 48 (253)
T TIGR02315 24 EINPGEFVAVIGPSGA---GKSTLLRCI 48 (253)
T ss_pred EEECCEEEEEECCCCC---CHHHHHHHH
T ss_conf 3416517999737887---267999877
No 78
>pfam11633 Nsp3 Replicase polyprotein 1ab. This family of proteins represents Nsp3, the product of ORF1a in group 2 coronavirus.This is the largest replicase subunit.
Probab=46.07 E-value=22 Score=15.97 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCC--CCEEEEEEEEECCC
Q ss_conf 898679999999669898898765246711699986898999999999779--98089999997788
Q gi|254780569|r 280 VEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN--ENIILIGEVTQRSE 344 (357)
Q Consensus 280 ~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g--~~a~iIG~V~~~~~ 344 (357)
+..|...+.|+..| +++.|=+.|.+ |+-|-..-+++-...+...++..| +-+-.+|.|+.+-+
T Consensus 43 ~Dy~A~~k~Lkrkg-~~~~eg~~t~~-Gv~fy~YS~~~pl~dVi~alNs~~~~l~~mPfGyVthG~~ 107 (142)
T pfam11633 43 IDYPAFMKVLKRKG-VDPKEGIQTVD-GVRFYGYSSKDPLADVITALNSLGKPLCMMPFGYVTHGLD 107 (142)
T ss_pred ECCHHHHHHHHHCC-CCCCCCEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCC
T ss_conf 65288999998548-68543528753-7799977178808999998862289707757678752722
No 79
>PRK02391 heat shock protein HtpX; Provisional
Probab=45.85 E-value=21 Score=16.17 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 378999999999999986095221430100000136556633689999741542
Q gi|254780569|r 118 NPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171 (357)
Q Consensus 118 ~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ 171 (357)
+++...++-+-+.+-|+++|++ ||.+|--+.-....|++|.-+++.
T Consensus 72 ~~~~~p~l~~~Ve~la~~agip--------~P~vyI~~~~~pNAFAtG~~~~~a 117 (297)
T PRK02391 72 SEEEAPELHGTVDRLCALADLP--------KPRVAVADTDVPNAFATGRSPKNA 117 (297)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCEEEECCCCCCE
T ss_conf 8001489999999999976989--------795899528997625745899876
No 80
>PRK06105 aminotransferase; Provisional
Probab=45.66 E-value=22 Score=15.93 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCC
Q ss_conf 99999999999860952214301000001365566
Q gi|254780569|r 123 TSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDY 157 (357)
Q Consensus 123 ~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~ 157 (357)
...++.+.+-|++.|+.||==|. +.|..+.+.+
T Consensus 238 ~~yl~~lr~lc~~~gillI~DEV--~tGfGRtG~~ 270 (460)
T PRK06105 238 KTYWEKIQAVLRKYDILLVADEV--ICGFGRTGNM 270 (460)
T ss_pred HHHHHHHHHHHHHCCCEEEECCC--CCCCCCCCCC
T ss_conf 68989999999856977993354--1178733376
No 81
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=44.98 E-value=12 Score=17.88 Aligned_cols=14 Identities=43% Similarity=0.824 Sum_probs=12.5
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 55248999538655
Q gi|254780569|r 179 CAGDLILGLPSSGL 192 (357)
Q Consensus 179 ~~GD~IIgl~SsG~ 192 (357)
++||+++||..||=
T Consensus 106 ~~GDVL~GiSTSGN 119 (186)
T TIGR00441 106 QEGDVLLGISTSGN 119 (186)
T ss_pred CCCCEEEEEECCCC
T ss_conf 89868887424767
No 82
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=44.42 E-value=23 Score=15.80 Aligned_cols=46 Identities=35% Similarity=0.543 Sum_probs=27.5
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------CHHHHCCCCCCCC-CE
Q ss_conf 687539720122688887630463222234542------0122012002544-30
Q gi|254780569|r 224 GETLLTPTRIYVSPLLKILRKTGKIKALAHITG------GGLTENIPRAIPA-HL 271 (357)
Q Consensus 224 ~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITG------GGl~~nL~RiLp~-gl 271 (357)
||.||.|- .+..++.+.++...||-+-+=+| +++.+...|+|+. +|
T Consensus 75 GEPllQ~~--F~~~~f~~cK~~~GiHTclDT~GGCftf~~~~~~~~~~lLe~TDL 127 (243)
T TIGR02493 75 GEPLLQPE--FVLELFKACKKELGIHTCLDTSGGCFTFLGGFTEAADELLEVTDL 127 (243)
T ss_pred CCCCCCHH--HHHHHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHHHCCCE
T ss_conf 95020169--999999999985698388744883433412124899975100587
No 83
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=43.25 E-value=24 Score=15.68 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCC
Q ss_conf 467885411221100000332037899999999999998609522143010000013655
Q gi|254780569|r 96 NDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDR 155 (357)
Q Consensus 96 NDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~ 155 (357)
.|++|.-.||+ .+.+...+ --...++++.+-|++.|+.||==|. +.|.-+.+
T Consensus 185 ~~~AAvi~EPi-----~g~gG~~~-p~~~yl~~lr~lc~~~gillI~DEV--~tGfGRtG 236 (396)
T PRK04073 185 PNTAAFLVEPI-----QGEAGINI-PPEGFLKAARELCKEENVLFIADEI--QTGLGRTG 236 (396)
T ss_pred CCEEEEEEECC-----CCCCCCCC-CCHHHHHHHHHHHHHHCCEEECCCC--EECCCCCC
T ss_conf 97569999898-----77789778-9989999999999983993526634--10788657
No 84
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=42.87 E-value=24 Score=15.73 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 88854346788541122110000033203789999999
Q gi|254780569|r 90 LVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIK 127 (357)
Q Consensus 90 lvam~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~ 127 (357)
+|.-||-|++. |-+|- ||=.+-...|+.+.++.+
T Consensus 71 lVGG~VRDlLL-g~~Pk---DfDvaT~AtPeei~~lF~ 104 (471)
T PRK11623 71 LVGGGVRDLLL-GKKPK---DFDVTTNATPEQVRKLFR 104 (471)
T ss_pred EECHHHHHHHC-CCCCC---CEEEECCCCHHHHHHHHH
T ss_conf 97728989975-98999---864618998899999998
No 85
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=42.77 E-value=24 Score=15.65 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=15.1
Q ss_pred HHCCCCCEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf 5246711699986898999999999779980
Q gi|254780569|r 303 TFNCGIGMVIIVHPDNKDCIIKKFQENNENI 333 (357)
Q Consensus 303 tFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a 333 (357)
+|||=|-+--++..|||...+..|+..|+++
T Consensus 118 ~f~l~~~~r~y~t~eDAr~~v~~Lra~G~~~ 148 (658)
T TIGR02329 118 AFNLDIEQRSYVTEEDARSCVNDLRASGIEV 148 (658)
T ss_pred HHCCCHHHHHHCCHHHHHHHHHHHHHCCCEE
T ss_conf 8634168875046778999999997689759
No 86
>pfam06277 EutA Ethanolamine utilisation protein EutA. This family consists of several bacterial EutA ethanolamine utilisation proteins. The EutA protein is thought to protect the lyase (EutBC) from inhibition by CNB12.
Probab=42.64 E-value=14 Score=17.37 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=42.6
Q ss_pred EEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHC---CCCEEEEEEEEEC
Q ss_conf 787100489867999999966989889876524671169998689899999999977---9980899999977
Q gi|254780569|r 273 ASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN---NENIILIGEVTQR 342 (357)
Q Consensus 273 a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~---g~~a~iIG~V~~~ 342 (357)
+.|-. .|..+|-|+-||+.+.-=-+-|-+..|.+.=+++++..+-+...=..|+.+ +.+-.+|-.|.-+
T Consensus 375 vALA~-~g~~~~~y~~i~~la~~i~~~~~~~~~~~~PLiiv~e~D~gK~LG~~l~~~l~~~~~vi~ID~V~v~ 446 (473)
T pfam06277 375 VALAF-PGLKNPSFQAVQALAEAIAEGMADLIERGLPLIIVVEQDMAKVLGQTLQALLGPKKPIICIDSIKVE 446 (473)
T ss_pred EEEEE-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEC
T ss_conf 89995-6899999999999999999998633668998899984618999999999860889988999659956
No 87
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=42.39 E-value=20 Score=16.18 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHH-HHHHHHHHHHC--C-CC-HH
Q ss_conf 77315756554468871899956888789999998288550168888854-34678854-11221100000--3-32-03
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMC-VNDILTHG-AEPLFFLDYLA--T-SQ-LN 118 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~-vNDi~~~G-A~Pl~fldyia--~-~~-l~ 118 (357)
-||++++-+.. +..+|-.-+.-.|+.+-.++..+.+-++. .|.|-.- --|+.|.| |-|+.+-|.+- + +. -.
T Consensus 76 ~g~~gv~cvEa-GgP~pg~Gcagrgi~~~~~lL~~l~~~~~--~D~Vl~DvlgdVvcgGFa~pi~~Ad~~~iVTs~e~~s 152 (267)
T cd02032 76 EGYGGVDCVEA-GGPPAGAGCGGYVVGETVKLLKELNLFEE--YDVILFDVLGDVVCGGFAAPLNYADYALIVTDNDFDS 152 (267)
T ss_pred CCCCCCEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 07678457665-89999988776404899999987166434--7789995366544566567610068899995671878
Q ss_pred HHHHHHHHHHHHHHHHHCCCEECC---CCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC--
Q ss_conf 789999999999999860952214---301000001365566336899997415421133345552489995386554--
Q gi|254780569|r 119 PDQATSIIKGIAAGCCQAGCALIG---GETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLH-- 193 (357)
Q Consensus 119 ~~~~~~ii~gi~~~c~~~g~~liG---GETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~H-- 193 (357)
.-....|.+++.+..+..++.+.| --+.++ +++.+-.=-+..-.+|+|+++..+..+.. .|-.+|-..-+..+
T Consensus 153 l~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~~~~-~~i~~fa~~lg~~lig~VP~d~~V~~se~-~g~tvie~~p~~~~~s 230 (267)
T cd02032 153 IFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-DLIDKFVEAVGMPVLAVLPLIEDIRRSRV-KGKTLFEMDESDEELA 230 (267)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH-HHHHHHHHHHCCCEEEECCCCHHHHHHHH-CCCEEEEECCCCCHHH
T ss_conf 999999999999975337976422787469857-89999999729946996699338899987-3986898489984378
Q ss_pred --CCCCC-HHHHHHHH
Q ss_conf --32320-34444553
Q gi|254780569|r 194 --SNGFA-LVRKIISL 206 (357)
Q Consensus 194 --sNGyS-LvRkil~~ 206 (357)
+.=|- |+|++++.
T Consensus 231 ~~a~~Yr~LA~~i~~n 246 (267)
T cd02032 231 YRCDYYLLIADQLLAG 246 (267)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999839
No 88
>pfam10126 Nit_Regul_Hom Uncharacterized protein, homolog of nitrogen regulatory protein PII. This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=42.32 E-value=17 Score=16.81 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=9.9
Q ss_pred EECHHHHHHHHHHHHHC
Q ss_conf 98689899999999977
Q gi|254780569|r 313 IVHPDNKDCIIKKFQEN 329 (357)
Q Consensus 313 vV~~e~a~~v~~~l~~~ 329 (357)
+|+.+.++++.+.+++.
T Consensus 73 VV~~e~~~kI~~~l~ek 89 (110)
T pfam10126 73 VVSEEKVEKIVELLKEK 89 (110)
T ss_pred EECHHHHHHHHHHHHHH
T ss_conf 86688889999999988
No 89
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=41.83 E-value=25 Score=15.59 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.7
Q ss_pred EEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 4787100489867999999966989889876524
Q gi|254780569|r 272 TASINLNSVEVPQIISWLSKKAHVKPAEVLRTFN 305 (357)
Q Consensus 272 ~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFN 305 (357)
++.+ ..|.+|.-++||++.+..+++.+|++|+
T Consensus 242 gavL--~PktVPrr~~~i~~~g~~~ee~vy~i~~ 273 (285)
T COG1831 242 GAVL--GPKTVPRRTREILEKGDLTEEDVYRIHV 273 (285)
T ss_pred CCCC--CCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8747--9620449999999855883889999987
No 90
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=41.34 E-value=15 Score=17.13 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHC---CCCEEEEEEEEEC
Q ss_conf 489867999999966989889876524671169998689899999999977---9980899999977
Q gi|254780569|r 279 SVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN---NENIILIGEVTQR 342 (357)
Q Consensus 279 ~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~---g~~a~iIG~V~~~ 342 (357)
.|..+|-|+.||+.++-=-+-|-+..+.+.=+++++..+-+...=..|+.+ +.+-.+|-.|.-+
T Consensus 377 ~g~~~~~y~~i~~la~~i~~~~~~~~~~~~PLivv~e~D~gK~LG~~l~~~l~~~~~li~ID~V~v~ 443 (471)
T PRK10719 377 PGSLPPSFAAVQTVAKALVDGVARFIPNPHPLIVVAEQDFGKVLGQLLRPQLPKQLPLICIDEVKVR 443 (471)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
T ss_conf 5889999999999999999988622557888899985608999999999863899988999548956
No 91
>PRK04897 heat shock protein HtpX; Provisional
Probab=41.27 E-value=26 Score=15.48 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 99999999999986095221430100000136556633689999741542
Q gi|254780569|r 122 ATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171 (357)
Q Consensus 122 ~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ 171 (357)
-.++.+-+.+-|+++|++ ||.+|--+.-....|++|.-+++.
T Consensus 79 ~p~L~~~Ve~la~~aglp--------~P~vyi~~~~~pNAFatG~~~~~~ 120 (298)
T PRK04897 79 APELWHIVEDMAMVAQIP--------MPRVFIIDDPSPNAFATGSDPKNA 120 (298)
T ss_pred CHHHHHHHHHHHHHCCCC--------CCEEEEECCCCCCEEEEECCCCCE
T ss_conf 579999999999976989--------990799628987069950688887
No 92
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=41.23 E-value=26 Score=15.47 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCC
Q ss_conf 9999999999986095221430100000136556
Q gi|254780569|r 123 TSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD 156 (357)
Q Consensus 123 ~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~ 156 (357)
...++++.+-|++.|+-||==|. +.|+.+.+.
T Consensus 241 ~~yl~~lr~lc~~~giLlI~DEV--~tGfGRTG~ 272 (452)
T PRK06943 241 PSYVRGLRALCDEYGVHLIADEI--AVGCGRTGT 272 (452)
T ss_pred HHHHHHHHHHHHHCCCEEEECCC--CCCCCCCCC
T ss_conf 99999999998644964871332--028864517
No 93
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=40.54 E-value=24 Score=15.66 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH--CCC-CH
Q ss_conf 77315756554468871899956888789999998288---55016888885434678854-1122110000--033-20
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGK---NDTIGIDLVAMCVNDILTHG-AEPLFFLDYL--ATS-QL 117 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~---~~~ig~Dlvam~vNDi~~~G-A~Pl~fldyi--a~~-~l 117 (357)
-||.|++-+.. +..+|-.-+.--|+.|-+.+..+++- ||-+=+| +.-|+.|.| |-|+.+-|.+ .++ ..
T Consensus 78 ~G~~gv~cvEa-GGP~pG~GCaGrgi~~~~~~L~~~~~~~~~D~Vl~D----vlgdVvCGGFa~Pi~~Ad~~~IVts~e~ 152 (269)
T PRK13185 78 EGYNGVDCVEA-GGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFD----VLGDVVCGGFAAPLQYADYALIVTANDF 152 (269)
T ss_pred CCCCCCEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE----CCCCCCCCCCCCCHHCCCEEEEEECCHH
T ss_conf 37677056643-899998776764318999999872874337879995----3674333655575100888999925308
Q ss_pred -HHHHHHHHHHHHHHHHHHCCCEEC------CCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCC
Q ss_conf -378999999999999986095221------4301000001365566336899997415421133345552489995386
Q gi|254780569|r 118 -NPDQATSIIKGIAAGCCQAGCALI------GGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSS 190 (357)
Q Consensus 118 -~~~~~~~ii~gi~~~c~~~g~~li------GGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~Ss 190 (357)
..-....|..++.+..+..++.|- .+++.......+. +..-.+|.++++..+..+..+ |-.++-...+
T Consensus 153 ~al~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~~~~d~v~~fa~~----~g~~vl~~IP~~~~V~~se~~-g~TviE~~p~ 227 (269)
T PRK13185 153 DSIFAANRIAAAIQAKAKNYKVRLAGVIANRSGGTDQIDKFNER----VGLRTLAHVPDLDAIRRSRLK-GKTLFEMEET 227 (269)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH----HCCCEEEECCCCHHHHHHHHC-CCEEEEECCC
T ss_conf 78999999999998653015853232576168837799999998----699769978997889999874-9867885899
Q ss_pred CCCC---CCC-CHHHHHHHHH
Q ss_conf 5543---232-0344445531
Q gi|254780569|r 191 GLHS---NGF-ALVRKIISLS 207 (357)
Q Consensus 191 G~Hs---NGy-SLvRkil~~~ 207 (357)
...+ +-| .|+|+++...
T Consensus 228 ~~~a~v~~~Yr~LA~~i~~~~ 248 (269)
T PRK13185 228 DELEEVQNEYLRLADQLLAGP 248 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHCC
T ss_conf 817899999999999998289
No 94
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.00 E-value=27 Score=15.35 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=22.2
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 8999538655432320344445531155456
Q gi|254780569|r 183 LILGLPSSGLHSNGFALVRKIISLSQLSWKD 213 (357)
Q Consensus 183 ~IIgl~SsG~HsNGySLvRkil~~~~~~~~~ 213 (357)
+++|-..+=.|+.|-.+++..+...+....+
T Consensus 2 vvi~~vg~D~Hd~G~~iva~~l~~~GfeVi~ 32 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAGFNVVN 32 (128)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999828765378899999999978972984
No 95
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=38.97 E-value=13 Score=17.54 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEC
Q ss_conf 999999999999986095221
Q gi|254780569|r 121 QATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 121 ~~~~ii~gi~~~c~~~g~~li 141 (357)
...+..+.|.+-+++.+|.++
T Consensus 240 ~~i~~a~~il~~a~~~~~~I~ 260 (391)
T PRK00073 240 DLIDTAKELLEKAKEKGVKIP 260 (391)
T ss_pred HHHHHHHHHHHHHHHCCCEEE
T ss_conf 789999999999874388276
No 96
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=38.92 E-value=18 Score=16.64 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHH-HHHHH--HHH--HHCC-
Q ss_conf 7731575655446887189995688878999999828----855016888885434678854-11221--100--0003-
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETG----KNDTIGIDLVAMCVNDILTHG-AEPLF--FLD--YLAT- 114 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~----~~~~ig~Dlvam~vNDi~~~G-A~Pl~--fld--yia~- 114 (357)
-||.++.-+.. +..+|-+-+..-|+-|.+.+.+.++ .+|.|=+|+ .-|+.|-| |-|+. +-+ |+.+
T Consensus 76 ~g~~gv~cve~-ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dv----lgdvvcggfa~P~~~~~A~evlIVts 150 (273)
T PRK13232 76 PGFGDIKCVES-GGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDV----LGDVVCGGFAMPIREGKAKEIYIVAS 150 (273)
T ss_pred CCCCCEEEEEC-CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 28897389868-99876765453047888889997083214798899941----47332365314420165768999807
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -320378999999999999986095
Q gi|254780569|r 115 -SQLNPDQATSIIKGIAAGCCQAGC 138 (357)
Q Consensus 115 -~~l~~~~~~~ii~gi~~~c~~~g~ 138 (357)
.......+..|.+++..-. +.++
T Consensus 151 ~E~~slyaannI~k~i~~~~-~~~~ 174 (273)
T PRK13232 151 GELMAIYAANNICKGLAKFA-KGGA 174 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HCCC
T ss_conf 60888999999999999996-2188
No 97
>TIGR01622 SF-CC1 splicing factor, CC1-like family; InterPro: IPR006509 These sequences represent a subfamily of RNA splicing factors including the Pad-1 protein (Neurospora crassa), CAPER (mouse) and CC1.3 (human). All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These splicing factors are closely related to the U2AF splicing factor family (IPR006529 from INTERPRO). ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=38.79 E-value=28 Score=15.22 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=8.7
Q ss_pred CCCEEEEECHHHHHHHHHHHH
Q ss_conf 711699986898999999999
Q gi|254780569|r 307 GIGMVIIVHPDNKDCIIKKFQ 327 (357)
Q Consensus 307 GiGmvlvV~~e~a~~v~~~l~ 327 (357)
|.|||=+.+.+.|.+++..|+
T Consensus 278 GyGFiqF~~~~~A~~Al~~lN 298 (531)
T TIGR01622 278 GYGFIQFRDAEEAKEALEKLN 298 (531)
T ss_pred CCCEEEECCHHHHHHHHHHHC
T ss_conf 540055111677899999848
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=38.55 E-value=28 Score=15.20 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=33.7
Q ss_pred CHHHHHHHHHCCCCHHHHHH--HHCCCCCEEEEECHHHHHHHHHHHHHC
Q ss_conf 67999999966989889876--524671169998689899999999977
Q gi|254780569|r 283 PQIISWLSKKAHVKPAEVLR--TFNCGIGMVIIVHPDNKDCIIKKFQEN 329 (357)
Q Consensus 283 p~iF~~I~~~g~I~~~EM~r--tFNmGiGmvlvV~~e~a~~v~~~l~~~ 329 (357)
-.+.++.++.|.|..-.+.+ -.+.|.|||-.-+++.|+++++.++..
T Consensus 14 ~~l~~~f~~~G~v~~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~ 62 (72)
T smart00362 14 EDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGT 62 (72)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCC
T ss_conf 9999999985977413562267677871799978999999999997889
No 99
>TIGR00500 met_pdase_I methionine aminopeptidase, type I; InterPro: IPR002467 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A. Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002468 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=37.95 E-value=5.1 Score=20.42 Aligned_cols=75 Identities=13% Similarity=0.249 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCC-CCCCCCCEEEEEEEEECC--CCCCC-CCCCCCCEEE---EEECC
Q ss_conf 03789999999999999860952214301000001-365566336899997415--42113-3345552489---99538
Q gi|254780569|r 117 LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGL-YHDRDYDLAGFAVGAVER--KELLS-PENVCAGDLI---LGLPS 189 (357)
Q Consensus 117 l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~v-y~~~~~Dlag~~vG~v~k--~~ii~-~~~i~~GD~I---Igl~S 189 (357)
.....+..|.+-..+--+.|-+|..|=.-. ..++ |++ | -...|+-+=|. .-|-+ .+-.|+||+| +|+.-
T Consensus 34 vST~eLD~i~~~~i~~~~hA~pAf~GY~PP-fsdvgfPP--f-t~~~C~S~Ne~V~HGiP~~~~vLKdGDivniD~g~~~ 109 (265)
T TIGR00500 34 VSTKELDRIAKDFIEKRGHAKPAFLGYYPP-FSDVGFPP--F-TGSVCISVNEVVIHGIPDKKKVLKDGDIVNIDVGVIY 109 (265)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCC--C-CCCEEEEECCEEEECCCCCCCEEECCCEEEEEEEEEE
T ss_conf 878999999999998479723535678778-66687885--5-5615632167888513884726513677875577886
Q ss_pred CCCCCC
Q ss_conf 655432
Q gi|254780569|r 190 SGLHSN 195 (357)
Q Consensus 190 sG~HsN 195 (357)
.|+||-
T Consensus 110 ~Gy~gD 115 (265)
T TIGR00500 110 DGYYGD 115 (265)
T ss_pred CCEEEC
T ss_conf 030211
No 100
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=37.72 E-value=19 Score=16.44 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=13.2
Q ss_pred CCCCCEEEEEECCCC
Q ss_conf 455524899953865
Q gi|254780569|r 177 NVCAGDLILGLPSSG 191 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG 191 (357)
-.+|||+++|+..||
T Consensus 106 ~g~~GDvLigISTSG 120 (176)
T COG0279 106 LGQPGDVLIGISTSG 120 (176)
T ss_pred CCCCCCEEEEEECCC
T ss_conf 278887899981799
No 101
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=37.67 E-value=29 Score=15.10 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=81.0
Q ss_pred HH-HHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCC
Q ss_conf 99-828855--016888885434678854112211000003320378999999999999986095221430100000136
Q gi|254780569|r 77 AI-ETGKND--TIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYH 153 (357)
Q Consensus 77 a~-~~~~~~--~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~ 153 (357)
|. .++.-| -+--+=|++-+-+|....-=|+.. | +=+|.-.+=-+..-|+.|-++ .-++|-| =|-+.
T Consensus 45 aa~sLGlPDLG~~tL~Eva~~~r~Itr~~~LPlLV-D-~DTGFGea~nvaRTVreme~A-GaAa~Hi--------EDQv~ 113 (287)
T TIGR02317 45 AAGSLGLPDLGITTLTEVAERARRITRVTDLPLLV-D-ADTGFGEALNVARTVREMEDA-GAAAVHI--------EDQVL 113 (287)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE-E-EECCCCCHHHHHHHHHHHHHH-HHHHCCH--------HHHCC
T ss_conf 41320677676678789999988777530487278-6-332898354499999999984-4540046--------77425
Q ss_pred CCCC-CEEEEEEEEECCCCCCCC----CCCCCCE-EEE-----EECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 5566-336899997415421133----3455524-899-----9538655432320344445531155456676666630
Q gi|254780569|r 154 DRDY-DLAGFAVGAVERKELLSP----ENVCAGD-LIL-----GLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHS 222 (357)
Q Consensus 154 ~~~~-Dlag~~vG~v~k~~ii~~----~~i~~GD-~II-----gl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~t 222 (357)
++.+ .|.| =.+|.++.+.+. -++|..+ .+| +.++-|+- +.+++.+....- .-+.-
T Consensus 114 pKrCGHL~g--K~lv~~~eMv~kI~AAv~Ar~De~f~iiARTDA~AvEGld--------~AI~RA~aYvEA----GAD~I 179 (287)
T TIGR02317 114 PKRCGHLNG--KELVSRDEMVRKIKAAVDARRDEDFVIIARTDARAVEGLD--------AAIERAKAYVEA----GADMI 179 (287)
T ss_pred CCCCCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHCCHH--------HHHHHHHHHHHH----CCCCC
T ss_conf 442678988--7404887799999997147899972775310234213658--------899999867872----61531
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCHHHHCCCCC--CC-CCEEEEECCCCCCCC
Q ss_conf 6687539720122688887630463-2222345420122012002--54-430478710048986
Q gi|254780569|r 223 LGETLLTPTRIYVSPLLKILRKTGK-IKALAHITGGGLTENIPRA--IP-AHLTASINLNSVEVP 283 (357)
Q Consensus 223 l~e~LL~PtriY~~~i~~ll~~~~~-i~~~ahITGGGl~~nL~Ri--Lp-~gl~a~Id~~~~p~p 283 (357)
+-|+|-+ .+.-.++- +..+ +-=+|++|..|=+- +-+. |. -|+..+| ||+-
T Consensus 180 FpEAL~~-----~~eFr~Fa-~~vk~vPLLANMTEFGKTP-l~t~deL~~~Gy~mVi----YPvt 233 (287)
T TIGR02317 180 FPEALES-----EEEFREFA-KAVKDVPLLANMTEFGKTP-LYTADELREIGYKMVI----YPVT 233 (287)
T ss_pred HHHHHHH-----HHHHHHHH-HHCCCCCEECCCCCCCCCC-CCCHHHHHHCCCEEEE----CCCH
T ss_conf 3878532-----88889999-8668984230112026764-5657989648944888----2406
No 102
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.55 E-value=28 Score=15.27 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 888543467885411221100000332037--8999999999999986095221
Q gi|254780569|r 90 LVAMCVNDILTHGAEPLFFLDYLATSQLNP--DQATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 90 lvam~vNDi~~~GA~Pl~fldyia~~~l~~--~~~~~ii~gi~~~c~~~g~~li 141 (357)
+....|..+--+||.-+-||-|+....-+. +.-..+++-+.+.|+..+++.+
T Consensus 109 i~~wsv~rik~~GadAvK~L~yyrpD~~~~in~~k~~~verig~eC~~~dipf~ 162 (340)
T PRK12858 109 IDNWSVLKIKEAGADAVKLLLYYRPDDDKAINDRKQAFVERVGAECRANDIPFF 162 (340)
T ss_pred CCCCCHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 765789999973968378999967999768899999999999999987799807
No 103
>KOG0145 consensus
Probab=37.10 E-value=27 Score=15.34 Aligned_cols=110 Identities=20% Similarity=0.332 Sum_probs=57.1
Q ss_pred CCCHHHHHCCCCCHHHHHHHHH---------HHCCCCCCCCCCCCCCHHHHCCCCCCCC----CEEEEECCCCCCCCHHH
Q ss_conf 6306687539720122688887---------6304632222345420122012002544----30478710048986799
Q gi|254780569|r 220 EHSLGETLLTPTRIYVSPLLKI---------LRKTGKIKALAHITGGGLTENIPRAIPA----HLTASINLNSVEVPQII 286 (357)
Q Consensus 220 ~~tl~e~LL~PtriY~~~i~~l---------l~~~~~i~~~ahITGGGl~~nL~RiLp~----gl~a~Id~~~~p~p~iF 286 (357)
...+-..+..|+|-|--++-.- +.....+..+..+|.+|+.+-..--||. +.++-|.--+.+--+-.
T Consensus 215 ~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~ 294 (360)
T KOG0145 215 QALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESI 294 (360)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHHH
T ss_conf 31567765394224787544225440010365502221037975445400024302589998710799982488720768
Q ss_pred HH--HHHHCCCCHHHHHHHHC---C-CCCEEEEECHHHHHHHHHHHHHC
Q ss_conf 99--99966989889876524---6-71169998689899999999977
Q gi|254780569|r 287 SW--LSKKAHVKPAEVLRTFN---C-GIGMVIIVHPDNKDCIIKKFQEN 329 (357)
Q Consensus 287 ~~--I~~~g~I~~~EM~rtFN---m-GiGmvlvV~~e~a~~v~~~l~~~ 329 (357)
-| .-.-|-+..-...|-|| | |.|||-...-+++.-++..|+-.
T Consensus 295 LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy 343 (360)
T KOG0145 295 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 343 (360)
T ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
T ss_conf 9987375554256789733775654533578842558999999872486
No 104
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=36.37 E-value=31 Score=14.97 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 888543467885411221100--------------0003320378999999999999986095221
Q gi|254780569|r 90 LVAMCVNDILTHGAEPLFFLD--------------YLATSQLNPDQATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 90 lvam~vNDi~~~GA~Pl~fld--------------yia~~~l~~~~~~~ii~gi~~~c~~~g~~li 141 (357)
.++.|.|=+++.||.|+---+ ++-.|.++++..+.+..... .+.+.|.|+|
T Consensus 24 t~n~~AN~lLA~GasPiMa~~~~E~~e~~~~a~al~iNiGTl~~~~~~~m~~a~~-~A~~~~~PvV 88 (262)
T PRK09355 24 VMNFTANGLLALGASPAMAHAPEEAEEMAKIASALVINIGTLTEERIEAMLAAGK-IANEAGKPVV 88 (262)
T ss_pred HHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH-HHHHCCCCEE
T ss_conf 3745799999839970314986789999975372488668899899999999999-9997399889
No 105
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=36.26 E-value=31 Score=14.95 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH-HHHCC--CC--HHHHHHHHHHHHHHHHHHHCCCEE-----CCCC--HHHCCCCC
Q ss_conf 168888-854346788541122110-00003--32--037899999999999998609522-----1430--10000013
Q gi|254780569|r 86 IGIDLV-AMCVNDILTHGAEPLFFL-DYLAT--SQ--LNPDQATSIIKGIAAGCCQAGCAL-----IGGE--TAEMPGLY 152 (357)
Q Consensus 86 ig~Dlv-am~vNDi~~~GA~Pl~fl-dyia~--~~--l~~~~~~~ii~gi~~~c~~~g~~l-----iGGE--TAemP~vy 152 (357)
|||-+| +++|||++-.|.+-.+++ |..|. .| .+-+.++.+.+=+.+.-+.+|+++ +-|- ....|+-|
T Consensus 97 ig~g~v~~ikvn~l~~AGc~v~illADwhA~LNnKmggdlekIr~~~~Y~~ev~kA~Gm~~dkv~Fv~~Sd~i~~~~~eY 176 (399)
T PTZ00126 97 IAQGLLKAINVNKLTKAGCTFVFWIADWFAMLNNKMGGDLKKIKKVGEYFIHVWKAAGMNMENVKFLWASDEINKNPNEY 176 (399)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCHHH
T ss_conf 05467889999999978997999974246875676799999999999999999998599824338996178654261267
Q ss_pred CCCCCCEEE
Q ss_conf 655663368
Q gi|254780569|r 153 HDRDYDLAG 161 (357)
Q Consensus 153 ~~~~~Dlag 161 (357)
-...+|++-
T Consensus 177 w~~Vmdiar 185 (399)
T PTZ00126 177 WLLVMDISR 185 (399)
T ss_pred HHHHHHHHH
T ss_conf 999999987
No 106
>PRK03001 heat shock protein HtpX; Provisional
Probab=36.12 E-value=31 Score=14.94 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 37899999999999998609522143010000013655663368999974154
Q gi|254780569|r 118 NPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERK 170 (357)
Q Consensus 118 ~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~ 170 (357)
+++...++.+-+.+-|+++|++ ||.+|--+.-....|++|.-+++
T Consensus 62 ~~~~~p~L~~~V~~la~~agip--------~P~v~i~~~~~pNAFAtG~~~~~ 106 (284)
T PRK03001 62 DENTAPQFYRMVRELAQRANLP--------MPKVYLINEDQPNAFATGRNPEH 106 (284)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC--------CCEEEEEECCCCCEEEECCCCCC
T ss_conf 8544689999999999976989--------79589985588654465368888
No 107
>KOG0214 consensus
Probab=35.48 E-value=32 Score=14.87 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=52.3
Q ss_pred HHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHH---------HHHCCCCCEEEEECHHHHHHHHHHHHH
Q ss_conf 12201200254430478710048986799999996698988987---------652467116999868989999999997
Q gi|254780569|r 258 GLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVL---------RTFNCGIGMVIIVHPDNKDCIIKKFQE 328 (357)
Q Consensus 258 Gl~~nL~RiLp~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~---------rtFNmGiGmvlvV~~e~a~~v~~~l~~ 328 (357)
||.+||. +-+.|+..+. .-|+.+++.+.| ++..|++ ++|=-|.=.-+--+|+..-+.++.+++
T Consensus 491 GLVKNLS------LmayIsvGS~-~sPi~EfLeewg-mE~le~~~ps~~~datkvfvNG~wvGlhrdp~~l~~tlr~lRR 562 (1141)
T KOG0214 491 GLVKNLS------LMAYISVGSL-ESPIVEFLEEWG-MENLEEISPSPSPDATKVFVNGVWVGLHRDPEELVATLKRLRR 562 (1141)
T ss_pred ECCCCCE------EEEEEECCCC-CHHHHHHHHHHC-HHHHHHCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHH
T ss_conf 0202325------7899851888-607999999857-3557643887688730899736077642798999999999987
Q ss_pred CCCCEEEEEEEEECCCCCCEEEEE
Q ss_conf 799808999999778872008996
Q gi|254780569|r 329 NNENIILIGEVTQRSEKSPPILYQ 352 (357)
Q Consensus 329 ~g~~a~iIG~V~~~~~~~~~V~~~ 352 (357)
+..-.....-|-+--+++.+|..+
T Consensus 563 ~~di~~Evs~vRDIr~kE~ri~tD 586 (1141)
T KOG0214 563 QFDIIAEVSMVRDIRDKEIRIFTD 586 (1141)
T ss_pred HHCCCHHHHHCCCCCHHHEEEEEC
T ss_conf 505640221002356203466412
No 108
>PRK03982 heat shock protein HtpX; Provisional
Probab=35.22 E-value=32 Score=14.84 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 37899999999999998609522143010000013655663368999974154
Q gi|254780569|r 118 NPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERK 170 (357)
Q Consensus 118 ~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~ 170 (357)
+++...++.+-+.+-|.++|++. |.+|--+.-....|++|.-+++
T Consensus 63 ~~~e~p~L~~~v~~la~~aglp~--------P~v~i~~~~~pNAFa~G~~~~~ 107 (288)
T PRK03982 63 SESEAPELYRIVERLANRANIPK--------PKVAIVPTQTPNAFATGRDPKH 107 (288)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCC--------CEEEEEECCCCCEEEECCCCCC
T ss_conf 81216899999999999769897--------9489970899766872689998
No 109
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=34.45 E-value=33 Score=14.76 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=39.8
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHCCCCCEE------EEECHHHHHHHHHHHHHCCCC
Q ss_conf 67999999966989889876524671169------998689899999999977998
Q gi|254780569|r 283 PQIISWLSKKAHVKPAEVLRTFNCGIGMV------IIVHPDNKDCIIKKFQENNEN 332 (357)
Q Consensus 283 p~iF~~I~~~g~I~~~EM~rtFNmGiGmv------lvV~~e~a~~v~~~l~~~g~~ 332 (357)
|..++.|.+..++++.+..+++|..+++| -..|..-+.+.++++++++..
T Consensus 46 ~~eIk~iRe~~~lSq~vFA~~L~vs~~Tv~~WEqGr~kPsg~AlkLL~ivq~~p~~ 101 (104)
T COG2944 46 PTEIKAIREKLGLSQPVFARYLGVSVSTVRKWEQGRKKPSGAALKLLRIVQNHPLE 101 (104)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 89999999982888999999988879999999817858997999999999866355
No 110
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase; InterPro: IPR005963 Tryptophan 5-monooxygenase (1.14.16.4 from EC) is a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. It is the rate-limiting enzyme in the biosynthesis of serotonin in the central nervous system and catalyzes the first step of the synthesis of melatonin in the pineal gland . L-tryptophan + tetrahydropteridine + O2 = 5-hydroxy-L-tryptophan + dihydropteridine + H2O ; GO: 0004510 tryptophan 5-monooxygenase activity, 0042427 serotonin biosynthetic process.
Probab=33.04 E-value=24 Score=15.68 Aligned_cols=117 Identities=17% Similarity=0.338 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCEEEEEECCC----CCCCCCCCHHHHHHHHHCCCCCC--CCCC-----CCCCCHHHHHCCCCCHHHHHH
Q ss_conf 421133345552489995386----55432320344445531155456--6766-----666306687539720122688
Q gi|254780569|r 170 KELLSPENVCAGDLILGLPSS----GLHSNGFALVRKIISLSQLSWKD--PSPI-----SSEHSLGETLLTPTRIYVSPL 238 (357)
Q Consensus 170 ~~ii~~~~i~~GD~IIgl~Ss----G~HsNGySLvRkil~~~~~~~~~--~~~~-----~~~~tl~e~LL~PtriY~~~i 238 (357)
.+|-|=+.++.-=+..|-.=+ |+-=+=|=-=|+.+.+-.++++. +.|- +.-+|||-+..+=+|+|..
T Consensus 157 k~IsDLD~~~nrVLMYG~eLDADHPGFKD~~YRkRR~~FA~lA~NYKHG~pIP~veYT~~E~kTWG~iyreL~~LY~~-- 234 (499)
T TIGR01270 157 KKISDLDKCANRVLMYGSELDADHPGFKDKEYRKRRMMFADLALNYKHGEPIPRVEYTEEEKKTWGTIYRELRRLYKT-- 234 (499)
T ss_pred CCCCHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--
T ss_conf 650404454240330066678787258872356778999999863105798886201513421010221234241112--
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCC-HHHHHHHHH---------CCCCHHH-----HHHH
Q ss_conf 887630463222234542012201200254430478710048986-799999996---------6989889-----8765
Q gi|254780569|r 239 LKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVP-QIISWLSKK---------AHVKPAE-----VLRT 303 (357)
Q Consensus 239 ~~ll~~~~~i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~p~p-~iF~~I~~~---------g~I~~~E-----M~rt 303 (357)
||+. =+.+|++. |.+.+|+.= +.+|.. .|-.+|++. |-+|+++ .|||
T Consensus 235 ----------hAc~-----efl~Nl~l-L~~~cGY~E--~niPQL~dvs~FLK~kTGF~~RPVAGYLSaRDFLsGLAFRV 296 (499)
T TIGR01270 235 ----------HACK-----EFLDNLPL-LEKYCGYRE--DNIPQLEDVSKFLKAKTGFRLRPVAGYLSARDFLSGLAFRV 296 (499)
T ss_pred ----------HCHH-----HHHHHHHH-HHHHCCCCC--CCCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHEE
T ss_conf ----------0105-----66510577-875268876--87752789999963225854256356566435531001020
Q ss_pred HCC
Q ss_conf 246
Q gi|254780569|r 304 FNC 306 (357)
Q Consensus 304 FNm 306 (357)
|-|
T Consensus 297 F~C 299 (499)
T TIGR01270 297 FHC 299 (499)
T ss_pred EEE
T ss_conf 111
No 111
>pfam11084 DUF2621 Protein of unknown function (DUF2621). This family is conserved in the Bacillaceae family. Several members are named as YneK. The function is not known.
Probab=32.92 E-value=35 Score=14.59 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHH------C---------CCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf 986799999996------6---------9898898765246711699986898999999999779980
Q gi|254780569|r 281 EVPQIISWLSKK------A---------HVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENI 333 (357)
Q Consensus 281 p~p~iF~~I~~~------g---------~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a 333 (357)
|+|+.|+-+++. | .++.+-+.| |++++.|+.+-.-..+.|++.+++.
T Consensus 73 PVPelFRDVAk~kIAgkIGelAl~e~a~~it~dliIr------GYI~ATPKRDhkFL~k~L~ek~ID~ 134 (141)
T pfam11084 73 PVPELFRDVAKQKIAGKIGELALKEKASRITLDLIIR------GYILATPKRDHKFLRKKLKEKNIDL 134 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------HHEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 3669999999999889999999972701652878574------3112177644499999999836784
No 112
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=32.80 E-value=13 Score=17.63 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH----------HHHHHHHHHHHHHHHHCCC
Q ss_conf 887899999982885501688888543467885411221100000332037----------8999999999999986095
Q gi|254780569|r 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNP----------DQATSIIKGIAAGCCQAGC 138 (357)
Q Consensus 69 GVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~----------~~~~~ii~gi~~~c~~~g~ 138 (357)
|||....+|..+.++ |.|++++-+|+-..-.+-+ |+.|-+--+.+.. .--.++...+.+-+++.||
T Consensus 21 GIG~~~~vA~~L~~~---g~dv~~tDi~~~av~~gl~-~v~DDif~P~~~lY~~A~lIYSIRPp~El~~~i~~lA~~v~a 96 (127)
T pfam03686 21 GIGFFLDVAKRLAER---GFDVLATDINEKAVPEGLR-FVVDDITNPNISIYEGADLIYSIRPPPELQSAILDVAKAVGA 96 (127)
T ss_pred ECCCCHHHHHHHHHC---CCCEEEEECCCCCCCCCCC-EEECCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 136888999999985---9968999777657667888-787258898988955878899818987888999999998199
Q ss_pred EEC----CCCHH
Q ss_conf 221----43010
Q gi|254780569|r 139 ALI----GGETA 146 (357)
Q Consensus 139 ~li----GGETA 146 (357)
.++ +||+.
T Consensus 97 ~liI~PL~~e~~ 108 (127)
T pfam03686 97 PLYIKPLTGEPV 108 (127)
T ss_pred CEEEECCCCCCC
T ss_conf 899984889977
No 113
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.67 E-value=25 Score=15.56 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=14.9
Q ss_pred CCCCCEEEEEECCCCCCCC
Q ss_conf 4555248999538655432
Q gi|254780569|r 177 NVCAGDLILGLPSSGLHSN 195 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG~HsN 195 (357)
-.+|||++|++.+||=..|
T Consensus 110 l~~~gDvLi~iStSGnS~N 128 (196)
T PRK13938 110 SARPGDTLFAISTSGNSMS 128 (196)
T ss_pred CCCCCCEEEEECCCCCCHH
T ss_conf 1689998999779999999
No 114
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=31.88 E-value=25 Score=15.54 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=57.8
Q ss_pred CEEEEEECCCC-CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH--HH---HHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 71899956888-789999998288550168888854346788541--12---2110000033203789999999999999
Q gi|254780569|r 60 DPILVSSSDGV-GTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA--EP---LFFLDYLATSQLNPDQATSIIKGIAAGC 133 (357)
Q Consensus 60 ~p~Lv~~tDGV-GTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA--~P---l~fldyia~~~l~~~~~~~ii~gi~~~c 133 (357)
|.+++ +.+-- ||.-.+...+.++ |+..--...+|+-..-+ +| +.|+-..+-+.++... ++.+++-|
T Consensus 101 d~iv~-~~~~Yggt~~l~~~~l~~~---Gi~~~~vd~~d~~~~~~ai~~~T~lv~~EtpsNP~l~v~D----i~~i~~iA 172 (391)
T PRK08133 101 DHVVS-SRSLFGSTLSLFEKIFARF---GIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELAD----IAALAEIA 172 (391)
T ss_pred CEEEE-CCCCCCCHHHHHHHHHHCC---CEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCEEEC----CHHHHHHH
T ss_conf 98996-7897453899999874107---8444467987999999745878459999789999866555----39999998
Q ss_pred HHCCCEECCCCHHHCCCCCCCCCC--CEEEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 860952214301000001365566--336899997415421133345552489995
Q gi|254780569|r 134 CQAGCALIGGETAEMPGLYHDRDY--DLAGFAVGAVERKELLSPENVCAGDLILGL 187 (357)
Q Consensus 134 ~~~g~~liGGETAemP~vy~~~~~--Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl 187 (357)
++.|+.++==-|---|-..++-++ |++ +-.-.|-|.|. +|++-|.
T Consensus 173 ~~~g~~~vVDNT~atP~~~~Pl~~GaDiv-----vhS~TKyi~GH----sD~lgG~ 219 (391)
T PRK08133 173 HAAGALLVVDNCFCTPALQQPLKLGADVV-----IHSATKYLDGQ----GRVLGGA 219 (391)
T ss_pred HHCCCEEEEECCCCCCCCCCHHHHCCCEE-----EEECCCEECCC----CCCEEEE
T ss_conf 75587599878976524446566188379-----99666030488----8744489
No 115
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=30.98 E-value=37 Score=14.38 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 888543467885411221100--------------0003320378999999999999986095221
Q gi|254780569|r 90 LVAMCVNDILTHGAEPLFFLD--------------YLATSQLNPDQATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 90 lvam~vNDi~~~GA~Pl~fld--------------yia~~~l~~~~~~~ii~gi~~~c~~~g~~li 141 (357)
..+.|.|=+++.||.|+---+ ++-.|.++++..+.+..... .+.+.+.|+|
T Consensus 19 t~n~~AN~lLA~GasPiMa~~~~E~~e~~~~a~aL~iNiGTl~~~~~~~m~~a~~-~A~~~~~PvV 83 (242)
T cd01170 19 VMNFVANVLLAIGASPIMSDAPEEVEELAKIAGALVINIGTLTSEQIEAMLKAGK-AANQLGKPVV 83 (242)
T ss_pred HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH-HHHHCCCCEE
T ss_conf 2634799999829962325986889999985174488668899899999999999-9997399889
No 116
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.69 E-value=37 Score=14.35 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50168888854346788541122110
Q gi|254780569|r 84 DTIGIDLVAMCVNDILTHGAEPLFFL 109 (357)
Q Consensus 84 ~~ig~Dlvam~vNDi~~~GA~Pl~fl 109 (357)
++||-|+-+++-+ .- ....|+..+
T Consensus 99 e~IGdDi~~v~~~-~~-~~~~~vi~v 122 (427)
T cd01971 99 EIIGDDVGAVVSE-FQ-EGGAPIVYL 122 (427)
T ss_pred HHHCCCHHHHHHH-HH-HCCCCEEEE
T ss_conf 8626768999999-88-659977982
No 117
>pfam00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disea
Probab=30.52 E-value=37 Score=14.37 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=33.1
Q ss_pred CHHHHHHHHHCCCCHHHHHHH---HCCCCCEEEEECHHHHHHHHHHHHHC
Q ss_conf 679999999669898898765---24671169998689899999999977
Q gi|254780569|r 283 PQIISWLSKKAHVKPAEVLRT---FNCGIGMVIIVHPDNKDCIIKKFQEN 329 (357)
Q Consensus 283 p~iF~~I~~~g~I~~~EM~rt---FNmGiGmvlvV~~e~a~~v~~~l~~~ 329 (357)
..+.++.++.|.|..-.|.+- -+.|.|||-+-++++|+++++.+...
T Consensus 13 ~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 62 (70)
T pfam00076 13 EDLKDLFSKFGPIESIKIVRDETGRSKGFAFVEFEDEEDAEKALEALNGK 62 (70)
T ss_pred HHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 99999999839814242222357887897799988999999999985999
No 118
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=30.49 E-value=14 Score=17.23 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=18.5
Q ss_pred HHHHCCCCCEEEEECHHHHHHHHHHHHHC----CCCEEEEEEEEEC
Q ss_conf 76524671169998689899999999977----9980899999977
Q gi|254780569|r 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQEN----NENIILIGEVTQR 342 (357)
Q Consensus 301 ~rtFNmGiGmvlvV~~e~a~~v~~~l~~~----g~~a~iIG~V~~~ 342 (357)
++.|-.+.-++ +|...+..+++..+-.- +.+-.+|-+|.-+
T Consensus 401 ~k~~s~~hpli-vv~~~D~gKaLGq~l~~~l~~~~pliciD~vkV~ 445 (473)
T COG4819 401 VKRFSNPHPLI-VVAEQDFGKALGQLLRPQLPGQLPLICIDEVKVR 445 (473)
T ss_pred HHHCCCCCCEE-EEEHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC
T ss_conf 98368998579-9972477898888753458878628998668984
No 119
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=30.40 E-value=38 Score=14.31 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.2
Q ss_pred CC-EEEEE--CHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 11-69998--6898999999999779980899999
Q gi|254780569|r 308 IG-MVIIV--HPDNKDCIIKKFQENNENIILIGEV 339 (357)
Q Consensus 308 iG-mvlvV--~~e~a~~v~~~l~~~g~~a~iIG~V 339 (357)
+| |++-+ ++++.+++++.|++++...-++|.|
T Consensus 309 ~G~l~v~~~g~~~~~~~a~~~l~~~~~~~evlgyv 343 (343)
T PRK11153 309 FGIMLAEMHGTQEDTQAAIAYLQEHHVKVEVLGYV 343 (343)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 89999996189899999999999859839997309
No 120
>PRK04148 hypothetical protein; Provisional
Probab=29.97 E-value=21 Score=16.09 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCHHH----------HHHHHHHHHHHHHHHH
Q ss_conf 88789999998288550168888854346788541122---1100000332037----------8999999999999986
Q gi|254780569|r 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPL---FFLDYLATSQLNP----------DQATSIIKGIAAGCCQ 135 (357)
Q Consensus 69 GVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl---~fldyia~~~l~~----------~~~~~ii~gi~~~c~~ 135 (357)
|||-...+|..+.+ -|.|++++-+|.-++-.|+|+ ++.|-+--+.+.. ---.+++..|.+-+++
T Consensus 24 GIGf~~~vA~~L~e---~g~dv~~~Din~~aV~~a~~~Gl~~v~DDif~P~l~iY~~a~lIYSIRPp~Elq~~il~lakk 100 (135)
T PRK04148 24 GIGFYFKVAKKLKE---SGFDVIVIDINKKAVEKAKKLGLNAFVDDIFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKK 100 (135)
T ss_pred ECCCCHHHHHHHHH---CCCCEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 23666789999987---499889995765543221232876375158899888851788799818987888999999997
Q ss_pred CCCEEC----CCCH
Q ss_conf 095221----4301
Q gi|254780569|r 136 AGCALI----GGET 145 (357)
Q Consensus 136 ~g~~li----GGET 145 (357)
.||.++ .||+
T Consensus 101 v~~dliI~PL~~E~ 114 (135)
T PRK04148 101 LNCPLYIKPLSGEE 114 (135)
T ss_pred CCCCEEEECCCCCC
T ss_conf 59989997078887
No 121
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=29.45 E-value=9.5 Score=18.51 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=39.8
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf 89995386554323203444455311554566766666306687539720122688887630463222234542012201
Q gi|254780569|r 183 LILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTEN 262 (357)
Q Consensus 183 ~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~n 262 (357)
..|-.|+.+--.+-+..++.++...+.......+.+.++.++-.---||-+-...+..+.+.......+...+||||.+
T Consensus 125 ~~il~p~~~~~~~~~~~v~~l~~~lGa~~~~m~~~~HD~~~A~~SHLPHlia~aL~~~~~~~~~~~~~~~~~agggfrD- 203 (258)
T pfam02153 125 PVILTPTEKTDTEALALVRELLEGIGAKVILMDPEEHDRVVALVSHLPHVVASALAATLAELGVDIELARKLAGGGFRD- 203 (258)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHH-
T ss_conf 5996188888799999999999986996998277778899999999999999999999986357889999756863443-
Q ss_pred CCCCCCCC
Q ss_conf 20025443
Q gi|254780569|r 263 IPRAIPAH 270 (357)
Q Consensus 263 L~RiLp~g 270 (357)
..|+..++
T Consensus 204 ~tRiA~s~ 211 (258)
T pfam02153 204 MTRIAASN 211 (258)
T ss_pred HHHHHCCC
T ss_conf 24784399
No 122
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=29.44 E-value=39 Score=14.20 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=16.9
Q ss_pred CCCHHHHCCCCC-------CCCCEEEEECCCCCCCC--HHHH-HHHHHCC
Q ss_conf 420122012002-------54430478710048986--7999-9999669
Q gi|254780569|r 255 TGGGLTENIPRA-------IPAHLTASINLNSVEVP--QIIS-WLSKKAH 294 (357)
Q Consensus 255 TGGGl~~nL~Ri-------Lp~gl~a~Id~~~~p~p--~iF~-~I~~~g~ 294 (357)
+++|+.+|-.++ +-+++ -|+.-.|+-| +.|. +|++.|+
T Consensus 179 ~~~Gi~~~~g~~r~~~~~~ii~~l--~i~rviFEAp~k~qq~~fI~k~Gp 226 (258)
T COG1809 179 KEIGITDNEGEVREGELDSIIKGL--GINRVIFEAPQKSQQVWFILKIGP 226 (258)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCC--CCHHEEEECCCCCHHHHHHHHHCC
T ss_conf 555764665522251799998448--802301226896230017877488
No 123
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=29.30 E-value=35 Score=14.56 Aligned_cols=47 Identities=32% Similarity=0.308 Sum_probs=33.6
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCC-----------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 468871899956888789999998288-----------550168888854346788541
Q gi|254780569|r 56 AGFVDPILVSSSDGVGTKLKIAIETGK-----------NDTIGIDLVAMCVNDILTHGA 103 (357)
Q Consensus 56 ~~~~~p~Lv~~tDGVGTK~~ia~~~~~-----------~~~ig~Dlvam~vNDi~~~GA 103 (357)
.+| +|-||..+=||=.--+.|.+.-. -..|-.|.|+||+||=.-.+|
T Consensus 23 lgy-ev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P~~a 80 (198)
T COG2117 23 LGY-EVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYPRNA 80 (198)
T ss_pred HCC-CCEEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 178-7179998733466406689999982997000016889999999999853898508
No 124
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=29.24 E-value=8.6 Score=18.84 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=78.5
Q ss_pred CCEE-EEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 8718-999568887899999982885501688888543467885411221100000--332-037899999999999998
Q gi|254780569|r 59 VDPI-LVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLA--TSQ-LNPDQATSIIKGIAAGCC 134 (357)
Q Consensus 59 ~~p~-Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia--~~~-l~~~~~~~ii~gi~~~c~ 134 (357)
+.|+ .+.+--=|-||+.+...+- -.|+-|+.-|+---.||-.-. +|+ +-++...+..+.+.+-++
T Consensus 187 ~rP~~aIiGGAKIsdKI~vi~~Ll-----------~kvD~IiiGGgmAntFL~A~G~~IGkSl~E~~~~~~a~~il~~a~ 255 (653)
T PRK13962 187 ERPYVVILGGAKVSDKIGVITNLL-----------EKVDKILIGGAMAFTFLKALGYEVGKSLVEEDKIDAAREILAKAE 255 (653)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH-----------HHCCEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 987399980787205899999999-----------878999982299999999779977866544357999999999999
Q ss_pred HCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEE--CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH------
Q ss_conf 609522143010000013655663368999974--154211333455524899953865543232034444553------
Q gi|254780569|r 135 QAGCALIGGETAEMPGLYHDRDYDLAGFAVGAV--ERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISL------ 206 (357)
Q Consensus 135 ~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v--~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~------ 206 (357)
+.+|.++ +| .|.+.. -..- .+.++.+.+.+..++.++-++. .| --+.++++..
T Consensus 256 ~~~~~I~------lP-------~D~vv~-~~~~~~~~~~~~~~~~Ip~~~~ilDIGp---~T--i~~~~~~I~~a~TI~W 316 (653)
T PRK13962 256 EKGVELV------LP-------VDAVAA-QKFEPDAEKKVVPIDAIPEDWMGLDIGP---ET--VELFKEKLSDAKTIVW 316 (653)
T ss_pred HCCCEEC------CC-------CEEEEE-CCCCCCCCEEEEEHHHCCCCCEEECCCH---HH--HHHHHHHHHHCCEEEE
T ss_conf 7298653------76-------369974-3457888647844551899897746889---99--9999999977999999
Q ss_pred -HCCCCCCCCCCCCC-CCHHHHHCCCCC--HHH----HHHHHHHHCCCCCCCCCCC-CCCH
Q ss_conf -11554566766666-306687539720--122----6888876304632222345-4201
Q gi|254780569|r 207 -SQLSWKDPSPISSE-HSLGETLLTPTR--IYV----SPLLKILRKTGKIKALAHI-TGGG 258 (357)
Q Consensus 207 -~~~~~~~~~~~~~~-~tl~e~LL~Ptr--iY~----~~i~~ll~~~~~i~~~ahI-TGGG 258 (357)
.........++..+ ..+.+++-+-|. .|+ -.-...+++.+..+-+.|| ||||
T Consensus 317 NGP~GvFE~~~F~~GT~~ia~aia~~~~~~~~sIvGGGDT~aAi~~~g~~~~fshvSTGGG 377 (653)
T PRK13962 317 NGPMGVFEFDAFAAGTEAVAEAIAEVTEKGAITIIGGGDSAAAVEKLGFESKFSHVSTGGG 377 (653)
T ss_pred ECCCCHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHH
T ss_conf 7896450387378999999999986425899899882799999996598679756846789
No 125
>smart00360 RRM RNA recognition motif.
Probab=29.24 E-value=27 Score=15.34 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=30.2
Q ss_pred CHHHHHHHHHCCCCHHHHHHHH----CCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 6799999996698988987652----46711699986898999999999
Q gi|254780569|r 283 PQIISWLSKKAHVKPAEVLRTF----NCGIGMVIIVHPDNKDCIIKKFQ 327 (357)
Q Consensus 283 p~iF~~I~~~g~I~~~EM~rtF----NmGiGmvlvV~~e~a~~v~~~l~ 327 (357)
-.+.+++.+.|.+..-.+.+.- +.|.+|+-+-++++++++++.+.
T Consensus 11 ~~l~~~f~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 11 EELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 9999999875998999860158888461409999899999999999849
No 126
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family; InterPro: IPR014258 This entry represents a subgroup of the SCP-like extracellular domain which is found only in bacteria capable of endospore formation. Proteins in this entry include YkwD of Bacillus subtilis. This domain is generally found at the C-terminal region of these proteins, while the N-terminal region sometimes contains a domain homologous to the spore coat assembly protein SafA (IPR014248 from INTERPRO)..
Probab=28.63 E-value=18 Score=16.52 Aligned_cols=37 Identities=38% Similarity=0.585 Sum_probs=26.9
Q ss_pred CCC-CHH-HHCCCHHHHHHHHHHHHHH-H-HHHCCCCCCCC
Q ss_conf 788-888-9088989999999999999-8-86267354366
Q gi|254780569|r 7 RGL-TYG-QAGVNIEAGNRTVTQIKSA-V-KSTKRAGTIGE 43 (357)
Q Consensus 7 ~~~-tY~-~aGVdi~~~~~~v~~i~~~-~-~~t~~~~v~~~ 43 (357)
=++ +|+ .||=||..++.-+++.-+. . ..+||.+.|+.
T Consensus 64 FGik~Y~W~AGENIA~G~~T~~~v~~awMNS~GHRaNIL~p 104 (129)
T TIGR02909 64 FGIKSYRWAAGENIAAGNSTVEAVHQAWMNSPGHRANILNP 104 (129)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCC
T ss_conf 46643102323543304877889985305872022226889
No 127
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases; InterPro: IPR011833 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins in this entry are glycosyltransferases with phosphorylase activities. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) . GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 800f its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels . There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that 'regardless of the a or b form, GPase functions as a dimer in vivo . The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain . The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments . The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible .; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=28.50 E-value=41 Score=14.10 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=33.5
Q ss_pred CCCH--HHHCCCCCCCCCEEEEECCCCC---CCCHHHHHHHHHCCCCHHHHH----HHHC
Q ss_conf 4201--2201200254430478710048---986799999996698988987----6524
Q gi|254780569|r 255 TGGG--LTENIPRAIPAHLTASINLNSV---EVPQIISWLSKKAHVKPAEVL----RTFN 305 (357)
Q Consensus 255 TGGG--l~~nL~RiLp~gl~a~Id~~~~---p~p~iF~~I~~~g~I~~~EM~----rtFN 305 (357)
|++. |.. ||+..+++|+ |+= -+|++++.|.++=+++|+|.+ |||+
T Consensus 302 ~~~~~~l~~-----f~~k~aiQLN-DTHPalaIPELMRLL~De~~~~WD~AW~It~~tfa 355 (822)
T TIGR02093 302 THGDKSLED-----FPKKVAIQLN-DTHPALAIPELMRLLIDEEGLDWDEAWDITTKTFA 355 (822)
T ss_pred CCCCCCHHH-----CCCEEEEEEC-CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 688875002-----1082888736-89873114667677764305888778776000016
No 128
>KOG0020 consensus
Probab=28.09 E-value=41 Score=14.05 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=54.5
Q ss_pred CCCCCC-CHHHHCCCCCCCCC-E----------------EEEECCCCCCCCHHHHHHHHHCCCCHH---------HHHHH
Q ss_conf 234542-01220120025443-0----------------478710048986799999996698988---------98765
Q gi|254780569|r 251 LAHITG-GGLTENIPRAIPAH-L----------------TASINLNSVEVPQIISWLSKKAHVKPA---------EVLRT 303 (357)
Q Consensus 251 ~ahITG-GGl~~nL~RiLp~g-l----------------~a~Id~~~~p~p~iF~~I~~~g~I~~~---------EM~rt 303 (357)
+|-+++ -||.+|..|+..+. + .++|+ |..|+.+-+.++-.-+++ =||+|
T Consensus 642 calVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EIN----PRHPlirell~Ri~adeeD~t~~d~A~lmf~T 717 (785)
T KOG0020 642 CALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEIN----PRHPLIRELLRRIAADEEDETVKDTAVLMFET 717 (785)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEC----CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 45531100666549999987654215782156775157236428----98828999998741583300599999999988
Q ss_pred HCCCCCEEEEECHHHHHHHHHHHHHC-CC--CEEEEEEE
Q ss_conf 24671169998689899999999977-99--80899999
Q gi|254780569|r 304 FNCGIGMVIIVHPDNKDCIIKKFQEN-NE--NIILIGEV 339 (357)
Q Consensus 304 FNmGiGmvlvV~~e~a~~v~~~l~~~-g~--~a~iIG~V 339 (357)
--.--||+|-=++..++++.+.+++. ++ +|++=-++
T Consensus 718 AtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~ 756 (785)
T KOG0020 718 ATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEI 756 (785)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 776337402566788999999998525999421123330
No 129
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=28.01 E-value=41 Score=14.04 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=66.4
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 55663368999974154211333455524899953865-54323203444455311554566766666306687539720
Q gi|254780569|r 154 DRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSG-LHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTR 232 (357)
Q Consensus 154 ~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG-~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~Ptr 232 (357)
+.+||+-| |-+-+|+..+. ++.++.+|--+-+| +-.+||-| ||++..-. .+..++.|+|..|.-
T Consensus 27 dSDyDvR~--V~i~~k~~yl~---~~~~rdviE~pl~~~~D~~gweL-rK~L~Ll~---------k~Np~~lEwl~Sp~V 91 (248)
T COG3541 27 DSDYDVRG--VHILPKSDYLG---LEQPRDVIEEPLDGEIDTVGWEL-RKFLLLLL---------KANANCLEWLNSPIV 91 (248)
T ss_pred CCCCCEEE--EEECCHHHHHC---CCCCCCCHHEECCCCCCHHHHHH-HHHHHHHH---------CCCCHHHHHHCCCCE
T ss_conf 87644246--88678999850---35654301000267642438999-99999986---------479258888559836
Q ss_pred HHHHH--HH---HHHHCCCCCCCCCCCCCCHHH-HCCCCCCCCCEEEEECC--CCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 12268--88---876304632222345420122-01200254430478710--0489867999999966989889
Q gi|254780569|r 233 IYVSP--LL---KILRKTGKIKALAHITGGGLT-ENIPRAIPAHLTASINL--NSVEVPQIISWLSKKAHVKPAE 299 (357)
Q Consensus 233 iY~~~--i~---~ll~~~~~i~~~ahITGGGl~-~nL~RiLp~gl~a~Id~--~~~p~p~iF~~I~~~g~I~~~E 299 (357)
.|..+ .. .++......+.+.|-- =|++ .|.+-.+++. -..+.. -.+.++--|+|+.+.+++++-.
T Consensus 92 l~~~~~~~~~~~kl~~~~~~~~~~~~Hy-~~lAr~~~~k~l~~~-~~~~KkylYviRp~~a~~~~~~~~~~pp~d 164 (248)
T COG3541 92 LYEVPGELANLLKLFAAFCITKKLSHHY-KGLARPHVKKFEKED-ENKVKKLLYLIRPYLAFDELDEKLGIPPMD 164 (248)
T ss_pred EEECHHHHHHHHHHHHHHCCHHHHHHHH-HHHHCCCHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8717889999999997434368889999-986261000104421-453667775524888889999608999842
No 130
>PRK13937 phosphoheptose isomerase; Provisional
Probab=27.93 E-value=35 Score=14.54 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.1
Q ss_pred CCCCCEEEEEECCCCCCC
Q ss_conf 455524899953865543
Q gi|254780569|r 177 NVCAGDLILGLPSSGLHS 194 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG~Hs 194 (357)
-.+|||++|++.+||-..
T Consensus 107 ~~~~gDili~iS~SGnS~ 124 (192)
T PRK13937 107 LGRPGDVLIGISTSGNSP 124 (192)
T ss_pred CCCCCCEEEEECCCCCCH
T ss_conf 578898899977999997
No 131
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=27.91 E-value=42 Score=14.03 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=26.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCEEEE--EECCCCCCCCCCCHHHHH
Q ss_conf 368999974154211333455524899--953865543232034444
Q gi|254780569|r 159 LAGFAVGAVERKELLSPENVCAGDLIL--GLPSSGLHSNGFALVRKI 203 (357)
Q Consensus 159 lag~~vG~v~k~~ii~~~~i~~GD~II--gl~SsG~HsNGySLvRki 203 (357)
+.|.-.|+-+-|+++. +.+|||.+| |=||.|=-+=...+++.+
T Consensus 174 ~~Gi~TG~~~LD~~~~--Gl~~g~LiIiaARPsmGKTafalnia~n~ 218 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred CCCCCCCCHHHHHHHC--CCCCCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 6778788078999836--99988689998546787459999999999
No 132
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=27.73 E-value=42 Score=14.00 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=6.6
Q ss_pred EEEEECCCCCHH
Q ss_conf 899956888789
Q gi|254780569|r 62 ILVSSSDGVGTK 73 (357)
Q Consensus 62 ~Lv~~tDGVGTK 73 (357)
+++.+--|+|--
T Consensus 16 ~vi~a~~g~GKS 27 (242)
T cd00984 16 IIIAARPSMGKT 27 (242)
T ss_pred EEEEECCCCCHH
T ss_conf 999968999999
No 133
>KOG3580 consensus
Probab=27.71 E-value=39 Score=14.18 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=15.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCEEEEEECC
Q ss_conf 33689999741542113334555248999538
Q gi|254780569|r 158 DLAGFAVGAVERKELLSPENVCAGDLILGLPS 189 (357)
Q Consensus 158 Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~S 189 (357)
|+.-|+.|+-+ +.--.++.+++||.|+-+..
T Consensus 428 DVGIFVaGvqe-gspA~~eGlqEGDQIL~VN~ 458 (1027)
T KOG3580 428 DVGIFVAGVQE-GSPAEQEGLQEGDQILKVNT 458 (1027)
T ss_pred CEEEEEEECCC-CCCHHHCCCCCCCEEEEECC
T ss_conf 23588741126-88301113000362677536
No 134
>pfam07393 Sec10 Exocyst complex component Sec10. This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins.
Probab=27.70 E-value=40 Score=14.12 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCCCCCHH---HHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCC
Q ss_conf 04898679---999999669898898765246711699986898999999999779
Q gi|254780569|r 278 NSVEVPQI---ISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN 330 (357)
Q Consensus 278 ~~~p~p~i---F~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g 330 (357)
.+|.+|.+ |+.|.+.++ +++|+|++..++....+...
T Consensus 639 ~~~~i~~l~~~F~~L~eL~n----------------Lf~V~pe~l~~l~~~~~l~~ 678 (703)
T pfam07393 639 KSWGIPELLEKFELLRELGN----------------LFLVQPDLLKELATEGALAN 678 (703)
T ss_pred HHCCCCHHHHHHHHHHHHHH----------------HEEECHHHHHHHHHHHHHCC
T ss_conf 86399159999999999852----------------42577989999975311126
No 135
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.43 E-value=35 Score=14.56 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=13.8
Q ss_pred CCCCCEEEEEECCCCCC
Q ss_conf 45552489995386554
Q gi|254780569|r 177 NVCAGDLILGLPSSGLH 193 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG~H 193 (357)
-.+|||++|++.+||-.
T Consensus 98 ~~~~gDili~iS~sG~s 114 (177)
T cd05006 98 LGQPGDVLIGISTSGNS 114 (177)
T ss_pred HCCCCCEEEEECCCCCC
T ss_conf 44689889998189999
No 136
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase; InterPro: IPR012825 The BluB protein is related to nitroreductase, and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). The bluB gene is also found to be preceded by B12 promoter elements . The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis ..
Probab=27.36 E-value=37 Score=14.41 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCEE-EEEEEEECCC
Q ss_conf 87652467116999868989999999997799808-9999997788
Q gi|254780569|r 300 VLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENII-LIGEVTQRSE 344 (357)
Q Consensus 300 M~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a~-iIG~V~~~~~ 344 (357)
|.|-|=.|+|+|=|.+|+...+++.+=....+-|| .||.+.+-.+
T Consensus 141 AARAeGlGvGWVSildp~~~~~~L~~Pe~~~~~AYLC~G~p~~~~d 186 (206)
T TIGR02476 141 AARAEGLGVGWVSILDPDAVRRLLDVPEGWRLVAYLCLGYPDAFPD 186 (206)
T ss_pred HHHHCCCCCCCEEEECHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
T ss_conf 8624076655046508799999962899960788884075046589
No 137
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=26.90 E-value=43 Score=13.90 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=13.8
Q ss_pred CCCCCEEEEE--CHHHHHHHHHHHHH
Q ss_conf 4671169998--68989999999997
Q gi|254780569|r 305 NCGIGMVIIV--HPDNKDCIIKKFQE 328 (357)
Q Consensus 305 NmGiGmvlvV--~~e~a~~v~~~l~~ 328 (357)
++=+|...+| +++.++++.+.++.
T Consensus 252 gERVGa~~vva~~~~~a~~v~sqlk~ 277 (396)
T COG1448 252 GERVGALSVVAEDAEEADRVLSQLKA 277 (396)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 30023158882788999999999999
No 138
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=26.46 E-value=44 Score=13.85 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=9.6
Q ss_pred CCCHHHHHCCCCCHHHH
Q ss_conf 63066875397201226
Q gi|254780569|r 220 EHSLGETLLTPTRIYVS 236 (357)
Q Consensus 220 ~~tl~e~LL~PtriY~~ 236 (357)
.+.|.+.|=.|..+-..
T Consensus 222 A~~LA~e~~~P~~~~f~ 238 (436)
T TIGR01035 222 AEKLAKELGGPEAVKFE 238 (436)
T ss_pred HHHHHHHCCCCCCCCCC
T ss_conf 99999870786645444
No 139
>cd07886 RHD-n_RelB N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the RelB family of transcription factors, categorized as class II NF-kappa B family members. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the anky
Probab=26.09 E-value=26 Score=15.48 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=20.5
Q ss_pred CCHHHHHH-HH-CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 89889876-52-46711699986898999999999779980899999
Q gi|254780569|r 295 VKPAEVLR-TF-NCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEV 339 (357)
Q Consensus 295 I~~~EM~r-tF-NmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG~V 339 (357)
+.++.+++ +| |||| ..|.+.+.++++..=.+.+.+++..|..
T Consensus 88 v~p~~~~~~~F~nlGI---qcvkKK~v~~~l~~R~~~~vdpf~~~~~ 131 (172)
T cd07886 88 LNPHSSPRHSFSNLGI---QCVRKREIEAAIETRLQLNIDPFKAGSL 131 (172)
T ss_pred ECCCCCCEEEECCCCE---EEEEEHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 6888753798557624---8876014899999999843696544012
No 140
>PRK05973 replicative DNA helicase; Provisional
Probab=26.05 E-value=38 Score=14.26 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=6.4
Q ss_pred CEEEEEECCCCC
Q ss_conf 718999568887
Q gi|254780569|r 60 DPILVSSSDGVG 71 (357)
Q Consensus 60 ~p~Lv~~tDGVG 71 (357)
|=+++.+--|.|
T Consensus 65 DLIIlAARPsMG 76 (237)
T PRK05973 65 DLVLLGARPGQG 76 (237)
T ss_pred CEEEEECCCCCC
T ss_conf 779994289887
No 141
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain; InterPro: IPR014144 Most sequences in this entry contain a 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, which is involved along with bacterial Ku protein in non-homologous end joining - the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than a multifunctional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear..
Probab=26.03 E-value=42 Score=14.02 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCCCCCCCCEEEEEE----EEECCCCCCCCC----CCCCCEEEEEECCCCCCCCCCCHHHH
Q ss_conf 013655663368999----974154211333----45552489995386554323203444
Q gi|254780569|r 150 GLYHDRDYDLAGFAV----GAVERKELLSPE----NVCAGDLILGLPSSGLHSNGFALVRK 202 (357)
Q Consensus 150 ~vy~~~~~Dlag~~v----G~v~k~~ii~~~----~i~~GD~IIgl~SsG~HsNGySLvRk 202 (357)
|.+++|+|- +|.++ |+=+...-- .. ..+.|.+.+-|.-+=++. +|+|||-
T Consensus 87 G~IP~GeYG-gG~VivWD~G~w~~~gD~-~~f~~~~~~kG~L~F~L~G~KL~G-~w~LvR~ 144 (163)
T TIGR02777 87 GTIPKGEYG-GGKVIVWDRGTWEPEGDP-EKFLREALKKGHLKFELHGEKLKG-GWALVRT 144 (163)
T ss_pred CCCCCCCCC-CCCEEEECCCCCCCCCHH-HHHHHHHHCCCCEEEEECCCEECC-CEEEEEC
T ss_conf 638886318-832687013100577607-899872031572588743842034-0788873
No 142
>pfam00554 RHD Rel homology domain (RHD). Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See pfam01833) that binds to DNA.
Probab=25.83 E-value=28 Score=15.25 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=21.7
Q ss_pred CCHHHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8988987652-467116999868989999999997799808999
Q gi|254780569|r 295 VKPAEVLRTF-NCGIGMVIIVHPDNKDCIIKKFQENNENIILIG 337 (357)
Q Consensus 295 I~~~EM~rtF-NmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG 337 (357)
+.+++|.-+| ||| ++.|.+.+.++.+..=.+.+.+.+.++
T Consensus 84 v~pe~~~~~F~nLG---Iqcv~KkdV~~~L~~R~~~~~dp~~~~ 124 (169)
T pfam00554 84 LGPEDMVASFQNLG---IQCVKKKDVEEALKERIELNIDPFNVG 124 (169)
T ss_pred ECCCCCEEEECCCC---EEEEEECCHHHHHHHHHHCCCCCCCCC
T ss_conf 37987679964753---378760208999999986446811142
No 143
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=25.68 E-value=39 Score=14.19 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.7
Q ss_pred CCCCCEEEEEECCCCC
Q ss_conf 4555248999538655
Q gi|254780569|r 177 NVCAGDLILGLPSSGL 192 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG~ 192 (357)
-.++||++|++.+||=
T Consensus 106 lg~~gDiLi~iStSGn 121 (196)
T PRK10886 106 LGHAGDVLLAISTRGN 121 (196)
T ss_pred HCCCCCEEEEEECCCC
T ss_conf 5679998999948999
No 144
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=25.53 E-value=46 Score=13.74 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHH-------------------HHHHHHHHHHCCCEECC
Q ss_conf 85434678854112211000-00332037899999-------------------99999999860952214
Q gi|254780569|r 92 AMCVNDILTHGAEPLFFLDY-LATSQLNPDQATSI-------------------IKGIAAGCCQAGCALIG 142 (357)
Q Consensus 92 am~vNDi~~~GA~Pl~fldy-ia~~~l~~~~~~~i-------------------i~gi~~~c~~~g~~liG 142 (357)
...+|=++..||+|+|. |. .....+|++.+++. ++.+.+-|++.|+.||-
T Consensus 69 ~at~~ai~~~G~~pv~~-Di~~~t~~id~~~l~~~i~~~tkaIi~vh~~G~~~d~~~i~~~~~~~~i~lIe 138 (352)
T cd00616 69 VATANAILLLGATPVFV-DIDPDTYNIDPELIEAAITPRTKAIIPVHLYGNPADMDAIMAIAKRHGLPVIE 138 (352)
T ss_pred HHHHHHHHHCCCEEEEE-ECCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 98999999859989984-07778577588999976286870999968989866889999999977989980
No 145
>cd07933 RHD-n_c-Rel N-terminal sub-domain of the Rel homology domain (RHD) of c-Rel. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the c-Rel family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B
Probab=25.42 E-value=18 Score=16.53 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=17.6
Q ss_pred CCHHHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8988987652-467116999868989999999997799808999
Q gi|254780569|r 295 VKPAEVLRTF-NCGIGMVIIVHPDNKDCIIKKFQENNENIILIG 337 (357)
Q Consensus 295 I~~~EM~rtF-NmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG 337 (357)
+.+++|.-+| |||| ..|.+.+..+.+..=.+.+.+.+..|
T Consensus 86 v~p~~~~~~F~nLGI---qcv~KK~v~~~L~~R~~~~~~pf~~~ 126 (172)
T cd07933 86 FGPERRVLAFQNLGI---QCVRRREVKEAIMLRISRGINPFNVP 126 (172)
T ss_pred ECCCCCEEEECCCCE---EEEEECCHHHHHHHHHHHCCCCCCCC
T ss_conf 589764788647623---78870778899999998557876576
No 146
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=25.36 E-value=32 Score=14.80 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=22.6
Q ss_pred HHCCCCCEEEEECHHHHHHHHHHHHHC
Q ss_conf 524671169998689899999999977
Q gi|254780569|r 303 TFNCGIGMVIIVHPDNKDCIIKKFQEN 329 (357)
Q Consensus 303 tFNmGiGmvlvV~~e~a~~v~~~l~~~ 329 (357)
+||.|.|..--+|+|+.+.+++..++.
T Consensus 319 IfnLGHGI~P~tp~enV~~~V~~vr~~ 345 (347)
T PRK00115 319 IFNLGHGILPETPPENVKALVEAVHEL 345 (347)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 996899849898999999999999985
No 147
>KOG3339 consensus
Probab=25.28 E-value=22 Score=16.01 Aligned_cols=10 Identities=60% Similarity=0.840 Sum_probs=7.9
Q ss_pred CCCHHHCCCC
Q ss_conf 4301000001
Q gi|254780569|r 142 GGETAEMPGL 151 (357)
Q Consensus 142 GGETAemP~v 151 (357)
||||+||=.+
T Consensus 48 GGHT~EMlrL 57 (211)
T KOG3339 48 GGHTGEMLRL 57 (211)
T ss_pred CCCHHHHHHH
T ss_conf 9768999999
No 148
>pfam12120 RNApol_Rpb2_rif DNA/RNA tunnel of bacterial DNA dependent RNA polymerase. This protein is found in bacteria. Proteins in this family are typically between 136 to 150 amino acids in length. The domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription.
Probab=25.06 E-value=47 Score=13.68 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=44.6
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCC---CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 345552489995386554323203444455311554566766666306687539---72012268888763046322223
Q gi|254780569|r 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLT---PTRIYVSPLLKILRKTGKIKALA 252 (357)
Q Consensus 176 ~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~---PtriY~~~i~~ll~~~~~i~~~a 252 (357)
...+.||.|. .|..|| |-- ++. .+.+. -....++..|+.+|-. |-|+|. .+-.+.+.---
T Consensus 8 A~L~~GdLl~----pg~~sn-y~~-~~~--~n~vY---~T~~ld~A~wgAELA~geg~~RiYi------VEPtG~fEdDp 70 (100)
T pfam12120 8 ADLQVGDLLT----PGYRSN-YGD-GKV--MNHIY---FTATLDAAIWGAELAAGDGRGRIYI------VEPTGPFEDDP 70 (100)
T ss_pred CCCCCCCEEC----CCCCCC-CCC-CCE--EEEEE---EECCCHHHHHHHHHHCCCCCCEEEE------ECCCCCCCCCC
T ss_conf 3377665504----786245-676-754--56899---8524305778999856789863899------75677766686
Q ss_pred CCCCCHHHHCCCCCCCC
Q ss_conf 45420122012002544
Q gi|254780569|r 253 HITGGGLTENIPRAIPA 269 (357)
Q Consensus 253 hITGGGl~~nL~RiLp~ 269 (357)
++|.-.+.+|..|...+
T Consensus 71 n~TdkkfPGNPTrSyRs 87 (100)
T pfam12120 71 NLTDKKFPGNPTRSYRS 87 (100)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 65578889897532203
No 149
>PRK06749 replicative DNA helicase; Provisional
Probab=25.03 E-value=47 Score=13.68 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=29.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCEEEE--EECCCCCCCCCCCHHHHHHH
Q ss_conf 3368999974154211333455524899--95386554323203444455
Q gi|254780569|r 158 DLAGFAVGAVERKELLSPENVCAGDLIL--GLPSSGLHSNGFALVRKIIS 205 (357)
Q Consensus 158 Dlag~~vG~v~k~~ii~~~~i~~GD~II--gl~SsG~HsNGySLvRkil~ 205 (357)
++.|.-.|+.+-|+++. ..+|||.+| |=||.|=-+=...+++.+..
T Consensus 165 ~~~Gi~TGf~~LD~lt~--Gl~~g~LiviaaRPsmGKTa~alnia~~~a~ 212 (428)
T PRK06749 165 EITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAK 212 (428)
T ss_pred CCCCCCCCHHHHHHHHC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98768778388987524--9998868999627989768999999999996
No 150
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=24.80 E-value=47 Score=13.65 Aligned_cols=91 Identities=16% Similarity=0.344 Sum_probs=50.6
Q ss_pred HCCCCHHH-HHHHHHHHHHHHHHHHCCCEEC---CCCHHHC------CC-CCCCCCCCEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 00332037-8999999999999986095221---4301000------00-136556633689999741542113334555
Q gi|254780569|r 112 LATSQLNP-DQATSIIKGIAAGCCQAGCALI---GGETAEM------PG-LYHDRDYDLAGFAVGAVERKELLSPENVCA 180 (357)
Q Consensus 112 ia~~~l~~-~~~~~ii~gi~~~c~~~g~~li---GGETAem------P~-vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~ 180 (357)
+-++..+| ..++.+++++. -||+.|+..+ ||-...- -+ .|..+.||+.. +...| +.+-|
T Consensus 60 ~E~~GVEPNP~~~Tv~kaV~-i~kee~idflLAVGGGSViD~tK~IAa~a~y~GD~Wdi~~-------~~~~i--~~alP 129 (384)
T COG1979 60 IEFGGVEPNPRLETLMKAVE-ICKEENIDFLLAVGGGSVIDGTKFIAAAAKYDGDPWDILT-------KKHKI--KDALP 129 (384)
T ss_pred EEECCCCCCCHHHHHHHHHH-HHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHH-------CCCCC--CCCCC
T ss_conf 99448778954899999999-9997396399995684200117788743546897688871-------58740--00145
Q ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 24899953865543232034444553115545
Q gi|254780569|r 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWK 212 (357)
Q Consensus 181 GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~ 212 (357)
=-.|+-||..|--+|+.|.+-+-=...++.+.
T Consensus 130 ~g~VLTLpATGSEmn~~aVIt~~~t~eK~~~~ 161 (384)
T COG1979 130 IGTVLTLPATGSEMNAGAVITNEETKEKLGFG 161 (384)
T ss_pred CCEEEECCCCCCCCCCCCEECCCCCCCCEECC
T ss_conf 53489723666556777265023346513204
No 151
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family; InterPro: IPR013443 This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes..
Probab=24.40 E-value=36 Score=14.50 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=19.1
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 11333455524899953865543232034444553
Q gi|254780569|r 172 LLSPENVCAGDLILGLPSSGLHSNGFALVRKIISL 206 (357)
Q Consensus 172 ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~ 206 (357)
=|+...|..||++||-- =-+|+|.+=++
T Consensus 26 hld~~~i~~GD~ViG~l-------Pv~Laad~c~k 53 (93)
T TIGR02620 26 HLDPIDISQGDKVIGTL-------PVSLAADICKK 53 (93)
T ss_pred CCCHHHCCCCCEEEECC-------CHHHHHHHHHC
T ss_conf 05520036988898412-------75788778646
No 152
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=24.38 E-value=27 Score=15.35 Aligned_cols=54 Identities=7% Similarity=0.234 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHCCCCHHHHHHH------HCC---CCCEEEEEC-----HHHHHHHHHHHHHC-CCC
Q ss_conf 4898679999999669898898765------246---711699986-----89899999999977-998
Q gi|254780569|r 279 SVEVPQIISWLSKKAHVKPAEVLRT------FNC---GIGMVIIVH-----PDNKDCIIKKFQEN-NEN 332 (357)
Q Consensus 279 ~~p~p~iF~~I~~~g~I~~~EM~rt------FNm---GiGmvlvV~-----~e~a~~v~~~l~~~-g~~ 332 (357)
-|=.++..+++.+..++++.|.|.+ |+. |-=-+-++. -..++++++.+++. |++
T Consensus 50 Gyip~eai~~vA~~l~l~~a~V~~VaTFY~~f~~~P~Gk~~I~VC~~~sC~~~Ga~~l~~~l~~~Lgi~ 118 (169)
T PRK07571 50 GYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEHTCVVCTGTACYVKGSAAILEDLENELGIK 118 (169)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 998999999999997969999999987999854789986699970888888769899999999984989
No 153
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase; InterPro: IPR001160 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This majority of this group of proteins are aminoacyl-histidine dipeptidases (3.4.13.3 from EC, Xaa-His dipeptidases), which are zinc-containing metallopeptidases that belong to MEROPS peptidase family M20 (clan MH), subfamily M20C . Proteins of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His , . The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide.. The X-His dipeptidases cleave Xaa-His dipeptides (where Xaa is any hydrophobic residue). The amino acid sequence deduced from Escherichia coli reveals that peptidase D is a slightly hydrophilic protein of 485 residues that contains no extended domains of marked hydrophobicity . Also contained within this family of proteins are acetylornithine deactylases which belong to MEROPS peptidase family M20, subfamily M20A non-peptidase homologues. ; GO: 0008769 X-His dipeptidase activity, 0006508 proteolysis.
Probab=24.15 E-value=48 Score=13.56 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=23.7
Q ss_pred HHHHHHCCCC--CCCCCCCCCCHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 8887630463--222234542012201200254430478710048
Q gi|254780569|r 238 LLKILRKTGK--IKALAHITGGGLTENIPRAIPAHLTASINLNSV 280 (357)
Q Consensus 238 i~~ll~~~~~--i~~~ahITGGGl~~nL~RiLp~gl~a~Id~~~~ 280 (357)
+|..+++... -=.++.|.||-+.-.+||= ...-+.|+.+..
T Consensus 236 ~L~~~~~n~~ke~~~L~~i~GGS~~NAIPrE--A~a~ia~~~~d~ 278 (506)
T TIGR01893 236 VLSELKENLDKENFRLSDIKGGSKRNAIPRE--AKALIAIDEEDV 278 (506)
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCCCCCC--EEEEEEECCCHH
T ss_conf 9999983379240578774178725677441--479999815208
No 154
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=23.97 E-value=49 Score=13.54 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHH-------------------HHHHHHHHHHCCCEECCC
Q ss_conf 85434678854112211000-00332037899999-------------------999999998609522143
Q gi|254780569|r 92 AMCVNDILTHGAEPLFFLDY-LATSQLNPDQATSI-------------------IKGIAAGCCQAGCALIGG 143 (357)
Q Consensus 92 am~vNDi~~~GA~Pl~fldy-ia~~~l~~~~~~~i-------------------i~gi~~~c~~~g~~liGG 143 (357)
..++|=++-+||+|+|. |. -....+|++.+++. ++.|.+-|++.|+.+|--
T Consensus 84 ~at~~ai~~~Ga~pvf~-Did~~t~~id~~~~e~~it~~tkaIi~Vh~~G~~~d~~~i~~i~~~~~i~vIED 154 (379)
T PRK11658 84 VSTLNMIVLLGATPVMV-DVDRDTLMVTPEAIEAAITPRTKAIIPVHYAGAPADLDAIRAIGERYGIPVIED 154 (379)
T ss_pred HHHHHHHHHCCCEEEEE-CCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEC
T ss_conf 99999999819989974-574565354889998654826549998568898663779999999759818970
No 155
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=23.62 E-value=49 Score=13.50 Aligned_cols=142 Identities=22% Similarity=0.304 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEECC-CCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCC-CCCCCC--EEEEEECCCCCC
Q ss_conf 3789999999999999860952214-301000001365566336899997415421133-345552--489995386554
Q gi|254780569|r 118 NPDQATSIIKGIAAGCCQAGCALIG-GETAEMPGLYHDRDYDLAGFAVGAVERKELLSP-ENVCAG--DLILGLPSSGLH 193 (357)
Q Consensus 118 ~~~~~~~ii~gi~~~c~~~g~~liG-GETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~-~~i~~G--D~IIgl~SsG~H 193 (357)
|.+..++=++.-.+.-.+....+.| |-.--||=++.--+|---|=..|-|.=+++... +++.+- =.||--+|-|
T Consensus 96 D~k~Ykdri~~~~k~T~~~dAv~tg~G~l~~~P~~~av~dF~FmGGSmGSVvGeK~vraie~A~~~~~P~~i~sASGG-- 173 (292)
T TIGR00515 96 DKKSYKDRIKKAQKETGLKDAVVTGKGTLYGMPIVVAVMDFSFMGGSMGSVVGEKIVRAIEKAVADRVPLVIFSASGG-- 173 (292)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC--
T ss_conf 856689999998741288651686003754842799975143458863026888999999999873798899967875--
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCH-------------
Q ss_conf 3232034444553115545667666663066875397201226888876304--6322223454201-------------
Q gi|254780569|r 194 SNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKT--GKIKALAHITGGG------------- 258 (357)
Q Consensus 194 sNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~--~~i~~~ahITGGG------------- 258 (357)
||- .+.-+++ -+ =-+ ....|..+++. .-|.=+.|.|=||
T Consensus 174 ------ARM--QE~~~SL------------MQ----MAK--tSaAL~~~~E~~lp~ISvLTdPT~GGVSASFA~LGDL~i 227 (292)
T TIGR00515 174 ------ARM--QEGLLSL------------MQ----MAK--TSAALARLSEEKLPYISVLTDPTTGGVSASFAMLGDLNI 227 (292)
T ss_pred ------HHH--HHHHHHH------------HH----HHH--HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf ------168--9998889------------88----899--999997421225872441368897226789876402544
Q ss_pred --------HHHCCCCCCCCCEEEEECCCCCCCCHHHH---HHHHHCCCC
Q ss_conf --------22012002544304787100489867999---999966989
Q gi|254780569|r 259 --------LTENIPRAIPAHLTASINLNSVEVPQIIS---WLSKKAHVK 296 (357)
Q Consensus 259 --------l~~nL~RiLp~gl~a~Id~~~~p~p~iF~---~I~~~g~I~ 296 (357)
+++ |||+.+-++. +.|+-|+ ||-+.|.|+
T Consensus 228 AEPkAlIGFAG--pRVIeQT~re-------kLPegFQtsEFLL~hG~iD 267 (292)
T TIGR00515 228 AEPKALIGFAG--PRVIEQTIRE-------KLPEGFQTSEFLLEHGAID 267 (292)
T ss_pred HCCCCCCCCCC--CEEEEECCCC-------CCCCCHHHHHHHHHCCCEE
T ss_conf 15642312787--5023232656-------5867003589998459512
No 156
>pfam10640 Pox_ATPase-GT mRNA capping enzyme N-terminal, ATPase and guanylyltransferase. This domain is the N-terminus of the large subunit viral mRNA capping enzyme, and carries both the ATPase and the guanylyltransferase activities of the enzyme. The guanylyltransferase enzymatic region runs from residues 242 (leucine)-273(arginine), the core of the acitve site being the lysine residue at 260. The ATPase activity is at the very N-terminal part of the domain.
Probab=23.61 E-value=43 Score=13.91 Aligned_cols=10 Identities=40% Similarity=0.398 Sum_probs=3.7
Q ss_pred CEEEEEECCC
Q ss_conf 7189995688
Q gi|254780569|r 60 DPILVSSSDG 69 (357)
Q Consensus 60 ~p~Lv~~tDG 69 (357)
+-.||.+.|+
T Consensus 69 N~qLV~~idn 78 (314)
T pfam10640 69 NVQLVDSIDN 78 (314)
T ss_pred HHHHHHHHHC
T ss_conf 3668875011
No 157
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=23.57 E-value=43 Score=13.90 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--HHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87189995688878999999828855016888885434678854--112---2110000033203789999999999999
Q gi|254780569|r 59 VDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHG--AEP---LFFLDYLATSQLNPDQATSIIKGIAAGC 133 (357)
Q Consensus 59 ~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~G--A~P---l~fldyia~~~l~~~~~~~ii~gi~~~c 133 (357)
.|.++++..===||...+...+.++ +|-.+-|-+ +|+-..- -+| +.|+...+.+.++...+ +.+++.|
T Consensus 88 Gd~iv~~~~~Yg~t~~~~~~~l~~~-GI~~~~vd~--~d~~~~~~~i~~~Tklv~~EspsNP~l~v~Di----~~ia~ia 160 (379)
T PRK06176 88 GDHVLLGDDVYGGTFRLFDKVLVKN-GLSCTIIDT--SDLSQIKKAIKPNTKALYLETPSNPLLKITDL----AQCASVA 160 (379)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC-CEEEEEECC--CCHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----HHHHHHH
T ss_conf 9989981898887767459876447-849998678--67688996568774599997799987601585----8999999
Q ss_pred HHCCCEECCCCHHHCCCCCCCCCC--CEEEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 860952214301000001365566--336899997415421133345552489995
Q gi|254780569|r 134 CQAGCALIGGETAEMPGLYHDRDY--DLAGFAVGAVERKELLSPENVCAGDLILGL 187 (357)
Q Consensus 134 ~~~g~~liGGETAemP~vy~~~~~--Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl 187 (357)
++.|+.++==-|---|=..++-++ |++ +-.-.|-+.|. ||++-|.
T Consensus 161 ~~~gi~~vvDNT~atP~~~~Pl~~GaDiV-----ihS~TKyi~Gh----sD~l~G~ 207 (379)
T PRK06176 161 KDHGLLTIVDNTFATPYYQNPLLLGADIV-----VHSGTKYLGGH----SDVVAGL 207 (379)
T ss_pred HHCCCEEEEECCCCCCCCCCHHHHCCCEE-----EEECCCCCCCC----CCCCCEE
T ss_conf 97698799736721513326234189889-----99545011478----7740238
No 158
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.44 E-value=50 Score=13.47 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 899953865543232034444553115545
Q gi|254780569|r 183 LILGLPSSGLHSNGFALVRKIISLSQLSWK 212 (357)
Q Consensus 183 ~IIgl~SsG~HsNGySLvRkil~~~~~~~~ 212 (357)
+++|-.-.=.|+.|-.++...+...+....
T Consensus 6 vvi~~~g~D~Hd~G~~iva~~l~~~GfeVi 35 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTEAGFEVI 35 (137)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999821886117889999999997897498
No 159
>KOG1392 consensus
Probab=23.34 E-value=50 Score=13.46 Aligned_cols=94 Identities=23% Similarity=0.397 Sum_probs=54.1
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-------HHHHHHHH
Q ss_conf 68871899956888789999998288550168888854346788541122110000033203789-------99999999
Q gi|254780569|r 57 GFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQ-------ATSIIKGI 129 (357)
Q Consensus 57 ~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~-------~~~ii~gi 129 (357)
++.+-+|| |||-|-..+.-.. .-+-..+||--...--++-.---|--.+|||.||....|. -..+..|.
T Consensus 40 n~~nivlv---dgvrtpfl~sgt~-ykdlmphdlar~al~~ll~kt~lpke~~dyii~gtviqevktsniareaal~agf 115 (465)
T KOG1392 40 NMPNIVLV---DGVRTPFLVSGTV-YKDLMPHDLAREALKALLEKTKLPKEQLDYIICGTVIQEVKTSNIAREAALLAGF 115 (465)
T ss_pred CCCCEEEE---ECCCCCEEECCCC-HHHHCHHHHHHHHHHHHHHHCCCCHHHHCEEEEHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 78866998---0365753652620-5530605889999999987525988883345303457777501288899986589
Q ss_pred ---------HHHHHHCCCEECCCCHHHCCCCCCCCCCCE
Q ss_conf ---------999986095221430100000136556633
Q gi|254780569|r 130 ---------AAGCCQAGCALIGGETAEMPGLYHDRDYDL 159 (357)
Q Consensus 130 ---------~~~c~~~g~~liGGETAemP~vy~~~~~Dl 159 (357)
.-+|-.+|+++..| | |+...+.+|.
T Consensus 116 sdktpahtvtmacissn~amttg----m-gliatg~~dv 149 (465)
T KOG1392 116 SDKTPAHTVTMACISSNVAMTTG----M-GLIATGNADV 149 (465)
T ss_pred CCCCCCCEEEEEHHCCCHHHHCC----C-EEEEECCCCE
T ss_conf 88886415652101035143306----2-0575077677
No 160
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase; InterPro: IPR010976 Phosphoglucomutases interconvert D-glucose 1-phosphate and D-glucose 6-phosphate, a reaction which is important for energy metabolism in many organisms and for cell wall biosynthesis in bacteria , . Beta-phosphoglucomutases are monomeric enzymes which interconvert the beta anomers of these compounds using Mg2+ as a cofactor. This entry groups together three clades: the characterised beta-phosphoglucomutases (bPGMs) (including those from Escherichia coli, Bacillus subtilus and Lactococcus lactis, a clade of putative bPGMs from mycobacteria and a clade including the uncharacterised Escherichia coli and Haemophilus influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the 'variant 3' Glu-Asp version of the third conserved HAD domain. The Lactococcus enzyme has been crystallised and studied in detail . It is composed of two distinct regions, an alpha/beta core domain similar to that found in other HAD family members, and a helical cap domain. The core domain contains a central six-stranded parallel beta sheet surrounded by six alpha helices, while the cap domain consists of an antiparallel four alpha-helix bundle. Overall, the monomer forms a "kidney-bean" shape similar to that observed in other HAD family members such as phosphoserine phosphatase. The active site of the enzyme is located at the interface of the two domains..
Probab=23.24 E-value=50 Score=13.45 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=45.5
Q ss_pred HCCCCCCC-----CCEEEEEC----CC----CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 01200254-----43047871----00----4898679999999669898898765246711699986898999999999
Q gi|254780569|r 261 ENIPRAIP-----AHLTASIN----LN----SVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQ 327 (357)
Q Consensus 261 ~nL~RiLp-----~gl~a~Id----~~----~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~ 327 (357)
.|.+++|. +-+.+.+| .+ .=|-|++|-.-++..++++.+ |+++ ||++.=+....
T Consensus 136 ~Na~~~L~~~~L~~~F~~~Vda~~vk~~~~AgKP~Pe~FL~AA~~Lgv~P~~-----------C~vf--EDA~~G~~Aa~ 202 (211)
T TIGR02009 136 KNADRILAKLGLTDYFDAVVDASEVKEEGLAGKPHPETFLLAAELLGVSPEE-----------CVVF--EDADAGVQAAR 202 (211)
T ss_pred CCHHHHHHHHHHHHHHCEEECHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH-----------EEEE--ECHHHHHHHHH
T ss_conf 2479999986126580143276899761479988710589999874789758-----------0332--22578999998
Q ss_pred HCCCCEEE
Q ss_conf 77998089
Q gi|254780569|r 328 ENNENIIL 335 (357)
Q Consensus 328 ~~g~~a~i 335 (357)
+.|+.|..
T Consensus 203 aaGm~~v~ 210 (211)
T TIGR02009 203 AAGMFAVA 210 (211)
T ss_pred HCCCCEEC
T ss_conf 36981632
No 161
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.10 E-value=51 Score=13.43 Aligned_cols=149 Identities=20% Similarity=0.331 Sum_probs=72.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHH---HCCCCCH---HHHHHHHHHHHHHHH
Q ss_conf 9999886267354366777315756554468871899956888789999998---2885501---688888543467885
Q gi|254780569|r 28 IKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIE---TGKNDTI---GIDLVAMCVNDILTH 101 (357)
Q Consensus 28 i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~---~~~~~~i---g~Dlvam~vNDi~~~ 101 (357)
..+.+....+.+-+.. |.|-.-|.-....|-.+-.+.++-.--+=+.+|.. .+.=|.+ .. ...-.+|=++-+
T Consensus 17 e~~~v~~vl~sg~i~~-G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~-TfvATan~i~~~ 94 (374)
T COG0399 17 ELAAVQEVLKSGWLTG-GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSF-TFVATANAVLLV 94 (374)
T ss_pred HHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCC-CHHHHHHHHHHC
T ss_conf 9999999996197416-86789999999998499739996684899999999648799997993687-539889999976
Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHH-------------------HHHHHHHHHHCCCEECCCCHHHCCCCCCCCC---C-
Q ss_conf 41122110000-0332037899999-------------------9999999986095221430100000136556---6-
Q gi|254780569|r 102 GAEPLFFLDYL-ATSQLNPDQATSI-------------------IKGIAAGCCQAGCALIGGETAEMPGLYHDRD---Y- 157 (357)
Q Consensus 102 GA~Pl~fldyi-a~~~l~~~~~~~i-------------------i~gi~~~c~~~g~~liGGETAemP~vy~~~~---~- 157 (357)
||+|+|. |.= -+..+|++.+++- |+.|.+-|++.|+.+|--=-.-+...|.... |
T Consensus 95 Ga~PVFv-Did~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~G 173 (374)
T COG0399 95 GAKPVFV-DIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFG 173 (374)
T ss_pred CCEEEEE-ECCCCCCCCCHHHHHHHCCCCCEEEEEEHHCCCCCCHHHHHHHHHHCCCEEEEECCHHCCCEECCCCCCCCC
T ss_conf 9967999-647641477999999871557749998512168779899999998739849987603206723584255666
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 3368999974154211333455524899
Q gi|254780569|r 158 DLAGFAVGAVERKELLSPENVCAGDLIL 185 (357)
Q Consensus 158 Dlag~~vG~v~k~~ii~~~~i~~GD~II 185 (357)
|++.|. ....+.++. . +|=.++
T Consensus 174 d~~~fS---F~~~K~itt--g-EGGav~ 195 (374)
T COG0399 174 DIGAFS---FHATKNLTT--G-EGGAVV 195 (374)
T ss_pred CEEEEE---ECCCCCCCC--C-CCEEEE
T ss_conf 468998---658776556--6-750798
No 162
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=22.93 E-value=51 Score=13.41 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHH-----------------------HHHHHHHHHHCCCEECC
Q ss_conf 5434678854112211000-00332037899999-----------------------99999999860952214
Q gi|254780569|r 93 MCVNDILTHGAEPLFFLDY-LATSQLNPDQATSI-----------------------IKGIAAGCCQAGCALIG 142 (357)
Q Consensus 93 m~vNDi~~~GA~Pl~fldy-ia~~~l~~~~~~~i-----------------------i~gi~~~c~~~g~~liG 142 (357)
-.+|=++-.||+|+|. |. .-...+|++.+++. ++.|.+-|++.|+.+|-
T Consensus 81 at~~ai~~~Ga~pvf~-Dvd~~t~~id~~~l~~~it~~~~~ktkaIi~vh~~G~~~d~~~i~~ia~~~~i~lIE 153 (380)
T TIGR03588 81 ATANCALYCGAKVDFV-DIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGLKIIE 153 (380)
T ss_pred HHHHHHHHCCCEEEEE-ECCHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEECCHHHHHHHHHHCCCEEEE
T ss_conf 8679999879968998-441000148988877777643677725999948985434899999999986988999
No 163
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor; InterPro: IPR006529 These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs. The well-characterised members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (IPR006509 from INTERPRO). Members of this subfamily are found in plants, metazoa and fungi. ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=22.66 E-value=46 Score=13.74 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.7
Q ss_pred CCCEEEEECHHHHHHHHHHHHH
Q ss_conf 7116999868989999999997
Q gi|254780569|r 307 GIGMVIIVHPDNKDCIIKKFQE 328 (357)
Q Consensus 307 GiGmvlvV~~e~a~~v~~~l~~ 328 (357)
|.+||.+.++..++-+++.|.-
T Consensus 378 GYaFceY~d~s~t~~Ai~aLnG 399 (577)
T TIGR01642 378 GYAFCEYKDPSVTDLAIAALNG 399 (577)
T ss_pred CEEEEEEECCCHHHHHHHHCCC
T ss_conf 4058875378779999853374
No 164
>pfam08128 consensus
Probab=22.62 E-value=23 Score=15.78 Aligned_cols=14 Identities=64% Similarity=0.933 Sum_probs=10.3
Q ss_pred CCCCCCCHHHHCCC
Q ss_conf 23454201220120
Q gi|254780569|r 251 LAHITGGGLTENIP 264 (357)
Q Consensus 251 ~ahITGGGl~~nL~ 264 (357)
+-.||||||++.+-
T Consensus 18 lnqitggg~wed~l 31 (42)
T pfam08128 18 LNQITGGGLWEDIL 31 (42)
T ss_pred HHHHHCCCHHHHHH
T ss_conf 86620631299999
No 165
>cd07887 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Dorsal and Dif (Dorsal-related immunity factor), and similar proteins. Dorsal and Dif are Rel-like transcription factors, which play roles in mediating innate immunity in Drosophila. They are activated via the Toll pathway. Cytoplasmic Dorsal/Dif are inactivated via forming a complex with Cactus, the Drosophila homologue of mammalian I-kappa B proteins. In response to signals, Cactus is degraded and Dorsal/Dif can be transported into the nucleus, where they act as transcription factors. Dorsal is also an essential gene in establishing the proper dorsal/ventral polarity in the developing embryo.
Probab=22.62 E-value=26 Score=15.47 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=17.6
Q ss_pred CHHHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988987652-467116999868989999999997799808999
Q gi|254780569|r 296 KPAEVLRTF-NCGIGMVIIVHPDNKDCIIKKFQENNENIILIG 337 (357)
Q Consensus 296 ~~~EM~rtF-NmGiGmvlvV~~e~a~~v~~~l~~~g~~a~iIG 337 (357)
.+++|.-+| ||| +..|.+.+.++.+..=++.+.+.+..|
T Consensus 88 ~p~~~~~~F~nlG---Iq~v~Kk~v~e~L~~R~~~~vdp~~~~ 127 (173)
T cd07887 88 NPTEMRIVFQKLG---IQCVKKKDVEESLKLREEINVDPFRTG 127 (173)
T ss_pred CCCCCEEEECCCC---CEEEEECCHHHHHHHHHHHCCCCCCCC
T ss_conf 8978679951577---423451238999999998555844360
No 166
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=22.58 E-value=49 Score=13.55 Aligned_cols=113 Identities=22% Similarity=0.327 Sum_probs=57.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCHHHHHHHHH-HHH---HHHHHH----------
Q ss_conf 9999982885501688888543467-----885411221100000332037899999-999---999998----------
Q gi|254780569|r 74 LKIAIETGKNDTIGIDLVAMCVNDI-----LTHGAEPLFFLDYLATSQLNPDQATSI-IKG---IAAGCC---------- 134 (357)
Q Consensus 74 ~~ia~~~~~~~~ig~Dlvam~vNDi-----~~~GA~Pl~fldyia~~~l~~~~~~~i-i~g---i~~~c~---------- 134 (357)
+.-++....--....|||++--|++ +.. |+.+.=..-+-+.-++.+.+++. |-+ ..++..
T Consensus 160 ~~~~~ai~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y 238 (485)
T COG0260 160 IREGEAIAEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEY 238 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHCCCCEEEEECHHHHHHCCCCEEEEECCCCCCCCEEEEEEC
T ss_conf 999999999999999876389633799999999-9998653781699935999987599516643567788984899973
Q ss_pred ------HCCCEECC-CCHHHCCCC-------CCCCCCCEEEE------------------EEEEEC-CCCCCCCCCCCCC
Q ss_conf ------60952214-301000001-------36556633689------------------999741-5421133345552
Q gi|254780569|r 135 ------QAGCALIG-GETAEMPGL-------YHDRDYDLAGF------------------AVGAVE-RKELLSPENVCAG 181 (357)
Q Consensus 135 ------~~g~~liG-GETAemP~v-------y~~~~~Dlag~------------------~vG~v~-k~~ii~~~~i~~G 181 (357)
.--++||| |=|=.-.|+ ...-.+|..|. ++|++. -++++.+..-+||
T Consensus 239 ~g~~~~~~~iaLVGKGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~l~vnv~~vl~~~ENm~~g~A~rPG 318 (485)
T COG0260 239 NGKGKAKKPIALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELKLPVNVVGVLPAVENMPSGNAYRPG 318 (485)
T ss_pred CCCCCCCCEEEEECCCEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 79988886499975703465898567775543331226444999999999999719993499997613158787899998
Q ss_pred EEEEEE
Q ss_conf 489995
Q gi|254780569|r 182 DLILGL 187 (357)
Q Consensus 182 D~IIgl 187 (357)
|+|...
T Consensus 319 DVits~ 324 (485)
T COG0260 319 DVITSM 324 (485)
T ss_pred CEEEEC
T ss_conf 767805
No 167
>KOG0470 consensus
Probab=22.58 E-value=32 Score=14.86 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=17.4
Q ss_pred HHHHCCCCCEEEEECHH------HHHHHHHHHHHCCCC
Q ss_conf 76524671169998689------899999999977998
Q gi|254780569|r 301 LRTFNCGIGMVIIVHPD------NKDCIIKKFQENNEN 332 (357)
Q Consensus 301 ~rtFNmGiGmvlvV~~e------~a~~v~~~l~~~g~~ 332 (357)
|+++|-..-|--.-+|+ +..+.++.+.+.|+.
T Consensus 289 Y~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~ 326 (757)
T KOG0470 289 YQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIE 326 (757)
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 50157604432446898653168999999998647758
No 168
>pfam02329 HDC Histidine carboxylase PI chain. Histidine carboxylase catalyses the formation of histamine from histidine. Cleavage of the proenzyme PI chain yields two subunits, alpha and beta, which arrange as a hexamer (alpha beta)6.
Probab=22.55 E-value=52 Score=13.36 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCH
Q ss_conf 50168888854346788541122110000033203789999999999999860952214301
Q gi|254780569|r 84 DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGET 145 (357)
Q Consensus 84 ~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGET 145 (357)
...|+|+.. ..++.---++|||-.--.--+.|..=..+.+ .++++.|.|-|-
T Consensus 95 ~iwGyDla~--~~~i~~~K~~PLf~~kq~dGs~lpVYda~PL--------l~A~~~lFGt~~ 146 (306)
T pfam02329 95 RIWGYDIAR--HDEIAKRKAKPLYTQKQPDGSPLPVYDIKPL--------LEATERLFGTAK 146 (306)
T ss_pred CEEEEEHHC--CCHHHCCCCCCCEEECCCCCCCCCCCCCHHH--------HHHHHHHHCCCC
T ss_conf 354100103--8212304456542332668998654254577--------899999838675
No 169
>TIGR01261 hisB_Nterm histidinol-phosphatase; InterPro: IPR005954 This entry describes a histidinol phosphatase domain. This domain occurs in bifunctional proteins at the N-terminal region, followed by an imidazoleglycerol-phosphate dehydratase domain (IPR000807 from INTERPRO). These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis. ; GO: 0004401 histidinol-phosphatase activity, 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm.
Probab=22.54 E-value=26 Score=15.41 Aligned_cols=81 Identities=26% Similarity=0.423 Sum_probs=37.4
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 26735436677731575655446887189995688878999999828855016888885434678854112211000003
Q gi|254780569|r 35 TKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLAT 114 (357)
Q Consensus 35 t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~ 114 (357)
.+.++|++. |.+|...+|+ =|+|+-=||.||+ |.=-..|++- + .+-|. |. --+=+-|-|.+-|
T Consensus 29 ~f~~~vIp~------LlkL~~~GYk-fVmvtNQDGLGt~---sFP~~~Fd~p-H-~~Ml~---iF--~S~Gi~F~dvLIC 91 (165)
T TIGR01261 29 RFEKGVIPA------LLKLKKAGYK-FVMVTNQDGLGTP---SFPQEDFDGP-H-NLMLQ---IF--RSQGIIFDDVLIC 91 (165)
T ss_pred HCCCCCCHH------HHHHHHCCCE-EEEEECCCCCCCC---CCCCCCCCHH-H-HHHHH---HH--CCCCEEEEEEEEC
T ss_conf 115541434------7888756975-8898544778886---5564674223-4-89999---85--0498432246314
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 320378999999999999986095221
Q gi|254780569|r 115 SQLNPDQATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 115 ~~l~~~~~~~ii~gi~~~c~~~g~~li 141 (357)
+....+-. .||+=.+.|+
T Consensus 92 PH~~~dnC---------~CRKPkikLl 109 (165)
T TIGR01261 92 PHFPDDNC---------DCRKPKIKLL 109 (165)
T ss_pred CCCCCCCC---------CCCCCCHHHH
T ss_conf 98876677---------8888852567
No 170
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189 Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=22.52 E-value=44 Score=13.82 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=7.9
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 55524899953865
Q gi|254780569|r 178 VCAGDLILGLPSSG 191 (357)
Q Consensus 178 i~~GD~IIgl~SsG 191 (357)
=+.||.+.+|-+-|
T Consensus 84 f~vGDrVcAL~~GG 97 (334)
T TIGR02824 84 FKVGDRVCALVAGG 97 (334)
T ss_pred CCCCCEEEEECCCC
T ss_conf 58875799875898
No 171
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=22.52 E-value=49 Score=13.51 Aligned_cols=115 Identities=28% Similarity=0.349 Sum_probs=68.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHHHHC
Q ss_conf 899956888789999998288550168888854346788541122110000033203-----789999999999999860
Q gi|254780569|r 62 ILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLN-----PDQATSIIKGIAAGCCQA 136 (357)
Q Consensus 62 ~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l~-----~~~~~~ii~gi~~~c~~~ 136 (357)
+||-+=.|| ..++.||..|. .-+|-|-+ -+|++|.| ++++++|-+....=+++.
T Consensus 109 lLvDAR~Gv------l~QTRRHs~i~-----------sLLGIrh~----VlAVNKmDLvdyd~~vF~~I~~~y~~fa~~L 167 (411)
T TIGR02034 109 LLVDARKGV------LEQTRRHSYIA-----------SLLGIRHV----VLAVNKMDLVDYDEEVFENIKKDYLAFAEQL 167 (411)
T ss_pred EEEEHHHHH------HHHHHHHHHHH-----------HHHCCCEE----EEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 554210213------45677999998-----------86045389----9999701114765788999999999999863
Q ss_pred -CCEE-------------CC-CCHHHCCC------------------CCCCCCCCEEEEEEEEECCCCC---------CC
Q ss_conf -9522-------------14-30100000------------------1365566336899997415421---------13
Q gi|254780569|r 137 -GCAL-------------IG-GETAEMPG------------------LYHDRDYDLAGFAVGAVERKEL---------LS 174 (357)
Q Consensus 137 -g~~l-------------iG-GETAemP~------------------vy~~~~~Dlag~~vG~v~k~~i---------i~ 174 (357)
|..- +- -.++.||- -.+...| =|=|=.|.|.+. |-
T Consensus 168 ~g~~~~~~iP~SAL~GdNv~y~~S~~MpWY~GPtLle~LEtv~~~~G~~~~~~l---RfPVQyVnRPn~tdFRGyaGt~a 244 (411)
T TIGR02034 168 AGVRDVTFIPLSALKGDNVVYSRSESMPWYSGPTLLEHLETVEVERGDAQDLPL---RFPVQYVNRPNLTDFRGYAGTIA 244 (411)
T ss_pred CCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC---EEEEEEEECCCCCCCCCHHHHEE
T ss_conf 898347998733136874022566788875788065300400003674224787---20045652688866652223102
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 3345552489995386554323203444455
Q gi|254780569|r 175 PENVCAGDLILGLPSSGLHSNGFALVRKIIS 205 (357)
Q Consensus 175 ~~~i~~GD~IIgl~SsG~HsNGySLvRkil~ 205 (357)
+.++++||.|..+| ||..|| +-||+.
T Consensus 245 sG~v~~Gd~v~vlP-SG~~sr----V~rIVt 270 (411)
T TIGR02034 245 SGSVKVGDEVVVLP-SGRSSR----VARIVT 270 (411)
T ss_pred CCEECCCCEEEEEE-CCCEEE----EEEEEE
T ss_conf 25534598899962-796443----558870
No 172
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=22.45 E-value=52 Score=13.34 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=21.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCEEEEEEC
Q ss_conf 8999974154211333455524899953
Q gi|254780569|r 161 GFAVGAVERKELLSPENVCAGDLILGLP 188 (357)
Q Consensus 161 g~~vG~v~k~~ii~~~~i~~GD~IIgl~ 188 (357)
...|+-|.++..-....+++||.|+.+.
T Consensus 13 ~~vV~~V~~~spA~~AGl~~GD~I~~in 40 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAIN 40 (79)
T ss_pred CCEEEEECCCCHHHHCCCCCCCEEEEEC
T ss_conf 9999998999989985999999999999
No 173
>KOG2876 consensus
Probab=22.22 E-value=33 Score=14.76 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=8.5
Q ss_pred EECCCCCCCCCCCHHHHHHH
Q ss_conf 95386554323203444455
Q gi|254780569|r 186 GLPSSGLHSNGFALVRKIIS 205 (357)
Q Consensus 186 gl~SsG~HsNGySLvRkil~ 205 (357)
||.|+|+-+||..|.|.+.+
T Consensus 88 gLks~~ITtng~vl~R~lp~ 107 (323)
T KOG2876 88 GLKSIGITTNGLVLARLLPQ 107 (323)
T ss_pred HHHHHCEECCCHHHHHHHHH
T ss_conf 01441501262267766178
No 174
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=22.19 E-value=39 Score=14.22 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=6.7
Q ss_pred HHHHHCCCEECC
Q ss_conf 999860952214
Q gi|254780569|r 131 AGCCQAGCALIG 142 (357)
Q Consensus 131 ~~c~~~g~~liG 142 (357)
.+.+..|++..|
T Consensus 189 ~A~~~~gip~~G 200 (466)
T PRK09243 189 LAGKRYGIPVSG 200 (466)
T ss_pred HHHHHCCCCCCC
T ss_conf 999975999743
No 175
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=22.18 E-value=53 Score=13.31 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCC
Q ss_conf 37899999999999998609522143010000013655663
Q gi|254780569|r 118 NPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD 158 (357)
Q Consensus 118 ~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~D 158 (357)
..+.++...+-+.+.-+..|-.=+--+ ..+|...-+|
T Consensus 20 ~~~~l~~Y~~lL~~wN~~~NLt~~~~~----~e~~~rHilD 56 (215)
T COG0357 20 QLEKLEAYVELLLKWNKAYNLTAIRDP----EELWQRHILD 56 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHH
T ss_conf 999999999999986175077777987----8999999999
No 176
>TIGR02638 lactal_redase lactaldehyde reductase; InterPro: IPR013460 The proteins in this entry form a distinct clade of iron-containing alcohol dehydrogenases. The genes encoding these proteins are generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in the production of lactaldehydes, which are reduced by these enzymes to 1,2 propanediol . These enzymes are also sometimes called 1,2 propanediol oxidoreductases. They are active under anaerobic conditions in E. coli, while being inactivated by reactive oxygen species under aerobic conditions . Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase..
Probab=21.81 E-value=54 Score=13.26 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCHHHHCCCC------CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC-HHHHHH
Q ss_conf 63222234542012201200------2544304787100489867999999966989-889876
Q gi|254780569|r 246 GKIKALAHITGGGLTENIPR------AIPAHLTASINLNSVEVPQIISWLSKKAHVK-PAEVLR 302 (357)
Q Consensus 246 ~~i~~~ahITGGGl~~nL~R------iLp~gl~a~Id~~~~p~p~iF~~I~~~g~I~-~~EM~r 302 (357)
+.||||||.=| -+. |+|+ .||. +-+.+.-...+=|+.|.+.-++. .++|-.
T Consensus 260 GlVHgmAHplG-A~y-~~PHGVaNA~LLP~----vm~fN~~~~~~ky~~IA~aMGv~~~~~ms~ 317 (380)
T TIGR02638 260 GLVHGMAHPLG-AFY-NTPHGVANAILLPI----VMEFNAEKTGEKYREIAKAMGVKGTEGMSD 317 (380)
T ss_pred HHHHHHHCCCC-CCC-CCCHHHHHHHHHHH----HHHHCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 78876415655-432-68378999875368----886166501478999998708632356669
No 177
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=21.73 E-value=53 Score=13.28 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=8.3
Q ss_pred CCCCCCCCEEEE
Q ss_conf 333455524899
Q gi|254780569|r 174 SPENVCAGDLIL 185 (357)
Q Consensus 174 ~~~~i~~GD~II 185 (357)
.+.+.+-|..|.
T Consensus 59 ~grNP~TGe~i~ 70 (90)
T PRK10753 59 TGRNPQTGKEIK 70 (90)
T ss_pred CCCCCCCCCEEE
T ss_conf 350819999898
No 178
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.61 E-value=53 Score=13.29 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.6
Q ss_pred CCCCCEEEEEECCCCCC
Q ss_conf 45552489995386554
Q gi|254780569|r 177 NVCAGDLILGLPSSGLH 193 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG~H 193 (357)
-.++||++|++.+||=-
T Consensus 108 ~~~~gDili~iS~SGnS 124 (197)
T PRK13936 108 LGQPGDVLLAISTSGNS 124 (197)
T ss_pred HCCCCCEEEEEECCCCC
T ss_conf 38999989999699999
No 179
>pfam01512 Complex1_51K Respiratory-chain NADH dehydrogenase 51 Kd subunit.
Probab=21.49 E-value=43 Score=13.95 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=27.4
Q ss_pred HHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 67885411--2211000003320378999999999999986095
Q gi|254780569|r 97 DILTHGAE--PLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGC 138 (357)
Q Consensus 97 Di~~~GA~--Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~ 138 (357)
=++|.|++ |..|-||.-. .+...+|++|+.-+++..|.
T Consensus 30 ~livN~~EcEP~~~~D~~lm----~~~p~~vl~G~~i~~~a~ga 69 (150)
T pfam01512 30 YLIVNGAECEPGLTKDRRLM----RERPHEIIEGILIAAYALGA 69 (150)
T ss_pred EEEEECCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHCC
T ss_conf 89996787984357982378----87589999999999998598
No 180
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=21.35 E-value=49 Score=13.56 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.7
Q ss_pred HHCCCCCEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 52467116999868989999999997799
Q gi|254780569|r 303 TFNCGIGMVIIVHPDNKDCIIKKFQENNE 331 (357)
Q Consensus 303 tFNmGiGmvlvV~~e~a~~v~~~l~~~g~ 331 (357)
+||.|.|..-=+|+++....++..++.+.
T Consensus 322 IfnlGhGI~P~tp~e~v~~lve~v~~~~~ 350 (352)
T COG0407 322 IFNLGHGILPETPPENVKALVEAVHEYSR 350 (352)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 32689876999987999999999998634
No 181
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=21.30 E-value=55 Score=13.19 Aligned_cols=66 Identities=6% Similarity=0.115 Sum_probs=44.6
Q ss_pred CCCEEEEECCCCCCC-CHHHHHHHHHC-CCCHHH----HHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf 443047871004898-67999999966-989889----8765246711699986898999999999779980
Q gi|254780569|r 268 PAHLTASINLNSVEV-PQIISWLSKKA-HVKPAE----VLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENI 333 (357)
Q Consensus 268 p~gl~a~Id~~~~p~-p~iF~~I~~~g-~I~~~E----M~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~~a 333 (357)
|....+.+.-+.+.. --+..-|++.- +.+.++ |+++-+-|.+.|.+-+.|.|+.....+.+.|+.+
T Consensus 21 p~~ykVil~NDd~tt~e~Vi~~L~~vf~~~t~~~A~~im~~vH~~G~avv~~~~~E~AE~k~~ql~~~GLt~ 92 (96)
T PRK13019 21 YPLYKVIVLNDDFNTFEHVVNCLKKIIPGMSEDRAWKLMITAHKEGSAVVWVGPLEQAELYHQQLTDAGLTM 92 (96)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCC
T ss_conf 995079998699997899999999996599999999999996638848999967999999999999687776
No 182
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.26 E-value=55 Score=13.18 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=12.4
Q ss_pred CCCCCEEEEEECCCCC
Q ss_conf 4555248999538655
Q gi|254780569|r 177 NVCAGDLILGLPSSGL 192 (357)
Q Consensus 177 ~i~~GD~IIgl~SsG~ 192 (357)
-.++||++|++.+||=
T Consensus 108 ~~~~gDvLi~iS~SGn 123 (192)
T PRK00414 108 VGREGDVLLGISTSGN 123 (192)
T ss_pred HCCCCCEEEEECCCCC
T ss_conf 1789999999768999
No 183
>pfam02110 HK Hydroxyethylthiazole kinase family.
Probab=21.25 E-value=55 Score=13.18 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 888543467885411221100--------------0003320378999999999999986095221
Q gi|254780569|r 90 LVAMCVNDILTHGAEPLFFLD--------------YLATSQLNPDQATSIIKGIAAGCCQAGCALI 141 (357)
Q Consensus 90 lvam~vNDi~~~GA~Pl~fld--------------yia~~~l~~~~~~~ii~gi~~~c~~~g~~li 141 (357)
..+.|.|=+++.||.|+---+ ++-.|.++++..+.+.... +.+.+.+.|+|
T Consensus 19 t~n~~AN~lLA~GasPiMa~~~~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~-~~A~~~~~PvV 83 (246)
T pfam02110 19 AQNFTANGLLALGASPIMSEAEEEVAELAKIAGALVINIGTLDNYRIEAMKAAV-KSANELGRPVV 83 (246)
T ss_pred HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHH-HHHHHCCCCEE
T ss_conf 263469999983997020599789999998628069977889989999999999-99997299889
No 184
>PRK10115 protease 2; Provisional
Probab=21.22 E-value=44 Score=13.88 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=11.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 268888763046322223454201
Q gi|254780569|r 235 VSPLLKILRKTGKIKALAHITGGG 258 (357)
Q Consensus 235 ~~~i~~ll~~~~~i~~~ahITGGG 258 (357)
....+.+|.+ +.|-|+|||-|||
T Consensus 464 s~~~l~ll~r-G~v~AiahvRGGg 486 (686)
T PRK10115 464 SFSRLSLLDR-GFVYAIVHVRGGG 486 (686)
T ss_pred CHHHHHHHHC-CCEEEEEECCCCC
T ss_conf 6657568658-9789999615788
No 185
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=21.19 E-value=55 Score=13.17 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 10000013655663368999974154211333455524899953865
Q gi|254780569|r 145 TAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSG 191 (357)
Q Consensus 145 TAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG 191 (357)
.+.|||+|++..+ |-.....--+.|...+|+|+.||+.-++
T Consensus 115 I~vk~GvY~e~v~------Vp~~~~~ITLyGed~~~~~tvIg~n~aa 155 (405)
T COG4677 115 IAVKAGVYQETVY------VPAAPGGITLYGEDEKPIDTVIGLNLAA 155 (405)
T ss_pred EEECCCEECEEEE------ECCCCCCEEEEECCCCCCCEEEEEECCC
T ss_conf 9971430000588------4179984368723788763389872578
No 186
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=21.15 E-value=44 Score=13.86 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHH---CCCCCEEEEECHHHHHHHHHHHHHC
Q ss_conf 86799999996698988987652---4671169998689899999999977
Q gi|254780569|r 282 VPQIISWLSKKAHVKPAEVLRTF---NCGIGMVIIVHPDNKDCIIKKFQEN 329 (357)
Q Consensus 282 ~p~iF~~I~~~g~I~~~EM~rtF---NmGiGmvlvV~~e~a~~v~~~l~~~ 329 (357)
...+.++..+.|.|..-.+.+.- +.|.+||-.-+++++.++++.+...
T Consensus 13 ~~~l~~~f~~~G~i~~v~~~~~~~~~~~~~afV~f~~~~~a~~a~~~~~~~ 63 (74)
T cd00590 13 EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCC
T ss_conf 999999998429889987751367740432999989999999999981999
No 187
>pfam04157 EAP30 EAP30/Vps36 family. This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity.
Probab=20.29 E-value=57 Score=13.04 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCC
Q ss_conf 799999996698988987652467116999868989999999997799
Q gi|254780569|r 284 QIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNE 331 (357)
Q Consensus 284 ~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g~ 331 (357)
.+.++++..+.++..++-+.|| .++.-+.+++..+.+.|.
T Consensus 176 ~il~~~~~~~~vt~~~l~~~l~--------ws~~~a~e~L~~~~~~G~ 215 (219)
T pfam04157 176 KILELAEELGGVTASELAEKLG--------WSIGRAKEVLEKAEKEGL 215 (219)
T ss_pred HHHHHHHHCCCCCHHHHHHHHC--------CCHHHHHHHHHHHHHCCC
T ss_conf 9999997279948999999979--------889999999999997499
No 188
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=20.22 E-value=58 Score=13.03 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC--EEEEEECCCCCCCCC
Q ss_conf 789999999999999860952214301000001365566336899997415421133345552--489995386554323
Q gi|254780569|r 119 PDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG--DLILGLPSSGLHSNG 196 (357)
Q Consensus 119 ~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~G--D~IIgl~SsG~HsNG 196 (357)
..++.+...-+.+.||+.++++ +.||-|-|+--|-|-++=+- |+++-+... ..+.
T Consensus 182 vsQVReca~~L~~~AK~~~i~~---------------------~lVGHVTK~G~iAGPkvLEHmVDtVl~fEgd--~~~~ 238 (372)
T cd01121 182 VSQVRECTAELMRFAKERNIPI---------------------FIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD--RHSE 238 (372)
T ss_pred HHHHHHHHHHHHHHHHHCCCEE---------------------EEEEEECCCCCCCCCHHHEEEEEEEEEECCC--CCCC
T ss_conf 8999999999999998619739---------------------9998762688637740310021368875157--7655
Q ss_pred CCHHHH
Q ss_conf 203444
Q gi|254780569|r 197 FALVRK 202 (357)
Q Consensus 197 ySLvRk 202 (357)
|-+.|-
T Consensus 239 ~R~LR~ 244 (372)
T cd01121 239 YRILRS 244 (372)
T ss_pred EEEEEE
T ss_conf 035674
No 189
>PRK05457 heat shock protein HtpX; Provisional
Probab=20.19 E-value=58 Score=13.03 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 999999999986095221430100000136556633689999741542
Q gi|254780569|r 124 SIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171 (357)
Q Consensus 124 ~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ 171 (357)
++.+=+.+-|.++|.+ ||.+|--..-....|++|.-+++.
T Consensus 78 ~L~~iVe~la~~aglp--------~P~vyi~~~~~pNAFAtG~~p~~a 117 (289)
T PRK05457 78 WLLETVARQARQAGIG--------MPEVAIYHSPEINAFATGASKNNS 117 (289)
T ss_pred HHHHHHHHHHHHCCCC--------CCEEEEECCCCCCEEECCCCCCCE
T ss_conf 9999999999983989--------991888748998701426898887
No 190
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family; InterPro: IPR014228 Members of this entry include YlxY, and are related to IPR014132 from INTERPRO, which represents a subset of the polysaccharide deacetylase family found in a species if, and only if, the species forms endospores e.g. Bacillus subtilis or Clostridium tetani. Proteins in this entry are likewise restricted to spore-formers, but are not universally found among endospore-forming species..
Probab=20.08 E-value=50 Score=13.46 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCC-C---CEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCC-EEEEEC----H
Q ss_conf 63222234542012201200254-4---3047871004898679999999669898898765246711-699986----8
Q gi|254780569|r 246 GKIKALAHITGGGLTENIPRAIP-A---HLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIG-MVIIVH----P 316 (357)
Q Consensus 246 ~~i~~~ahITGGGl~~nL~RiLp-~---gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiG-mvlvV~----~ 316 (357)
..+|-+|... |-+-+++-.+-. . -.=..+|.=-|..|..=..+++. |-++.| | |||-=| .
T Consensus 176 ~~pkWFAPPS-GSF~d~Vv~~Aad~~M~TimWtVDTIDWk~P~p~vl~~Rv-------l~KiHp---GA~vLMHPT~Ssa 244 (269)
T TIGR02873 176 VKPKWFAPPS-GSFRDEVVQIAADLQMGTIMWTVDTIDWKNPEPSVLVDRV-------LSKIHP---GAMVLMHPTESSA 244 (269)
T ss_pred CCCCEECCCC-CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH-------HHHCCC---CCEEECCCCCHHH
T ss_conf 9870402888-7641577877874689638874311247788746898887-------740689---8657648997668
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf 9899999999977998089999997
Q gi|254780569|r 317 DNKDCIIKKFQENNENIILIGEVTQ 341 (357)
Q Consensus 317 e~a~~v~~~l~~~g~~a~iIG~V~~ 341 (357)
+..|..+..++++|+ -||.|++
T Consensus 245 ~gLe~lIt~ikekGy---~iGtv~~ 266 (269)
T TIGR02873 245 EGLEELITKIKEKGY---KIGTVTE 266 (269)
T ss_pred HHHHHHHHHHHHCCC---CCCCHHH
T ss_conf 999999899976286---3001553
Done!