RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole
synthetase [Candidatus Liberibacter asiaticus str. psy62]
(357 letters)
>gnl|CDD|180049 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase;
Provisional.
Length = 327
Score = 523 bits (1351), Expect = e-149
Identities = 190/331 (57%), Positives = 240/331 (72%), Gaps = 4/331 (1%)
Query: 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68
LTY AGV+IEAGN V +IK AVK T R +G +GGFGGLFDL K G+ +P+LVS +D
Sbjct: 1 LTYKDAGVDIEAGNELVERIKPAVKRTFRPEVLGGLGGFGGLFDLPK-GYKEPVLVSGTD 59
Query: 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
GVGTKLK+AI+ GK+DTIGIDLVAMCVND+L GAEPLFFLDY+AT +L+P+ A ++KG
Sbjct: 60 GVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGAEPLFFLDYIATGKLDPEVAAQVVKG 119
Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLP 188
IA GC QAGCALIGGETAEMPG+YH+ DYDLAGFAVG VE+ +++ V GD+++GL
Sbjct: 120 IAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDGSKVKEGDVLIGLA 179
Query: 189 SSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKI 248
SSGLHSNG++LVRKI+ L D P +LGE LL PTRIYV P+L +L++ +
Sbjct: 180 SSGLHSNGYSLVRKIL--EVLDLDDTLPELDGKTLGEELLEPTRIYVKPVLALLKE-VDV 236
Query: 249 KALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI 308
K +AHITGGG EN+PR +P L A I+ S VP I WL K +V+ E+ RTFN GI
Sbjct: 237 KGMAHITGGGFIENLPRVLPEGLGAEIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFNMGI 296
Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEV 339
GMV+IV P++ D + + E+ +IG V
Sbjct: 297 GMVLIVPPEDADAALALLEAAGEDAWVIGRV 327
>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase. This
enzyme is found as a homodimeric monofunctional protein
in prokaryotes and as part of a larger, multifunctional
protein, sometimes with two copies of this enzyme in
tandem, in eukaryotes.
Length = 332
Score = 430 bits (1107), Expect = e-121
Identities = 172/334 (51%), Positives = 230/334 (68%), Gaps = 2/334 (0%)
Query: 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68
+TY AGV+I+AGN V +IKS VK T+R +G +GGF GLFDL + +P+LVS +D
Sbjct: 1 VTYADAGVDIDAGNEAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLG-DKYKEPVLVSGTD 59
Query: 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
GVGTKL +A K+DTIGIDLVAM VND+L GAEPLFFLDYLA +L+P+ A+ I+KG
Sbjct: 60 GVGTKLLVAEAMNKHDTIGIDLVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKG 119
Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLP 188
IA GC QAGCAL+GGETAEMPG+Y YDLAG AVG VE+ E+++ E V GD+++GL
Sbjct: 120 IAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEKVKPGDVLIGLG 179
Query: 189 SSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKI 248
SSG+HSNG +LVRK++ + +P +LGE LL PTRIYV P+L+++++ ++
Sbjct: 180 SSGIHSNGLSLVRKVLEDIAGLDYEDTPEDFGKTLGEELLEPTRIYVKPILELIKEV-EV 238
Query: 249 KALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI 308
LAHITGGGL ENIPR +P L A I+++S P I W+ + +V+ E+ RTFN G+
Sbjct: 239 HGLAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEEMYRTFNMGV 298
Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342
G V+IV + D + E +IGEV +
Sbjct: 299 GFVVIVPEEEVDKALALLNARGEKAWVIGEVKKG 332
>gnl|CDD|178172 PLN02557, PLN02557, phosphoribosylformylglycinamidine cyclo-ligase.
Length = 379
Score = 378 bits (973), Expect = e-105
Identities = 175/334 (52%), Positives = 228/334 (68%), Gaps = 19/334 (5%)
Query: 8 GLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSS 67
GLTY AGV+I+AG+ V +I IGGFGGLF F D LV+ +
Sbjct: 58 GLTYKDAGVDIDAGSELVRRIAKMAPG---------IGGFGGLFP-----FGDSYLVAGT 103
Query: 68 DGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIK 127
DGVGTKLK+A ETG +DTIGIDLVAM VNDI+T GA+PLFFLDY ATS L+ D A +IK
Sbjct: 104 DGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLDVDLAEKVIK 163
Query: 128 GIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGL 187
GI GC Q+ CAL+GGETAEMPG Y + +YDL+GFAVG+V++ ++ +N+ AGD+++GL
Sbjct: 164 GIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNIVAGDVLIGL 223
Query: 188 PSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGK 247
PSSG+HSNGF+LVR++++ S LS KD P +S ++GE L+ PT IYV +L I+ K G
Sbjct: 224 PSSGVHSNGFSLVRRVLAKSGLSLKDQLPGASV-TIGEALMAPTVIYVKQVLDIISKGG- 281
Query: 248 IKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG 307
+K +AHITGGG T+NIPR P L A I S EVP + WL + +++ AE+ RTFN G
Sbjct: 282 VKGIAHITGGGFTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMG 341
Query: 308 IGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQ 341
IGMV++V P+ D I+ +E IGEV
Sbjct: 342 IGMVLVVSPEAADRIL---EEGAYPAYRIGEVIN 372
>gnl|CDD|162329 TIGR01379, thiL, thiamine-monophosphate kinase. Proteins scoring
between the trusted and noise cutoff for this model
include short forms from the Thermoplasmas (which lack
the N-terminal region) and a highly derived form from
Campylobacter jejuni. Eukaryotes lack this enzyme, and
add pyrophosphate from ATP to unphosphorylated thiamine
in a single step.
Length = 317
Score = 48.9 bits (117), Expect = 2e-06
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 84 DTIGIDLVAMCVNDILTHGAEPLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIG 142
+ +G VA+ ++D+ GA P +FL L S L+ + G+ Q G L+G
Sbjct: 58 EDLGWKAVAVNLSDLAAMGATPKWFLLSLGLPSDLDEAWLEAFYDGLFECAKQYGVPLVG 117
Query: 143 GETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI-----LGLPSSGL 192
G+T P L + A+G + L GDL+ LG ++GL
Sbjct: 118 GDTVSSPELV------VTVTAIGEAPKGRALLRSGAKPGDLVFVTGTLGDSAAGL 166
>gnl|CDD|180226 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.
Length = 318
Score = 41.0 bits (97), Expect = 5e-04
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 20/110 (18%)
Query: 89 DLVAMCVNDILTHGAEPLFFLDYLAT-SQLNPDQATSIIKGIAAGCCQAGCALIGGETAE 147
DL AM GA P FL LA L+ ++ G+ + G LIGG+T
Sbjct: 73 DLAAM--------GARPAAFLLALALPKDLDEAWLEALADGLFELADRYGAELIGGDTTR 124
Query: 148 MPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI-----LGLPSSGL 192
P L ++ A+G V L GDL+ LG ++GL
Sbjct: 125 GPDL------SISVTAIGDVPGGRALRRSGAKPGDLVAVTGTLGDSAAGL 168
>gnl|CDD|132311 TIGR03267, methan_mark_2, putative methanogenesis marker protein 2.
A single member of this protein family is found in each
of the first ten complete genome sequences of archaeal
methanogens, and nowhere else. Sequence similarity to
various bacterial proteins is reflected in Pfam models
pfam00586 and pfam02769, AIR synthase related protein
N-terminal and C-terminal domains, respectively. The
functions of proteins in this family are unknown, but
their role is likely one essential to methanogenesis.
Length = 323
Score = 39.0 bits (91), Expect = 0.002
Identities = 54/256 (21%), Positives = 106/256 (41%), Gaps = 45/256 (17%)
Query: 91 VAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPG 150
V + VNDI G +P+ ++ L+ + + D +++G+ G + G ++GG T
Sbjct: 82 VLVNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVLEGMREGAWKFGVPVVGGHT----- 134
Query: 151 LYHDRDYDLAGFAVGAVERKE-LLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQL 209
+ D Y+ A+ + +++ ++ + GDLI+ L + L
Sbjct: 135 -HPDTPYNALDVAIVGIAKEDCIIRSDTAKPGDLIIF---------AIDLDGRPYPSFPL 184
Query: 210 SWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPA 269
+W D + + S L + V + L K GK I+ GL + + A
Sbjct: 185 NW-DTTTMKSPDYLRAQMD----AVVEIAERKLVKAGK-----DISNPGLIGTLGMLLEA 234
Query: 270 -HLTASINLNSVEVPQ---IISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKK 325
+ A ++L S+ P+ +++WL + P G G V+ P+N I++
Sbjct: 235 SRVGAEVDLESIPKPEDVDMVTWLK----MYP---------GSGFVLTADPENVREIVRV 281
Query: 326 FQENNENIILIGEVTQ 341
++ +IGEV +
Sbjct: 282 LEDAGLTASVIGEVIE 297
>gnl|CDD|162510 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine
synthase II. Phosphoribosylformylglycinamidine synthase
is a single, long polypeptide in most Proteobacteria and
eukarotes. Three proteins are required in Bacillus
subtilis and many other species. This is the longest of
the three and is designated PurL,
phosphoribosylformylglycinamidine synthase II, or FGAM
synthase II.
Length = 715
Score = 36.5 bits (85), Expect = 0.010
Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 66/288 (22%)
Query: 95 VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCAL----IGGETAEMPG 150
+ DIL+ GA P+ LD L L+ + + +G+ AG G + +GGE
Sbjct: 98 LRDILSMGARPIALLDSLRFGPLDDPKNRYLFEGVVAGISDYGNRIGVPTVGGEV----- 152
Query: 151 LYHDRDYD----LAGFAVGAVERKELL-----SPENVCAGDLILGLPS---SGLHSNGFA 198
D Y+ + VG V + +++ P N L+L G+ FA
Sbjct: 153 -EFDESYNGNPLVNVMCVGLVRKDDIVTGKAKGPGNK----LVLVGGKTGRDGIGGATFA 207
Query: 199 ---LVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHIT 255
L + + + + P +E L E L TG +K + +
Sbjct: 208 SEELSEEAEEEDRPAVQVGDPF-TEKLLIEATLE------------AVDTGLVKGIKDLG 254
Query: 256 GGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVL------RTFNCGI 308
GLT A L A I L+ +VP ++ + P E++ R
Sbjct: 255 AAGLTSASSEMAAKGGLGAEIYLD--KVPL------REPGMTPYEIMLSESQER------ 300
Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLI 356
M+++V P++ + +++ F++ +IGEVT E + Y+G ++
Sbjct: 301 -MLLVVAPEDVEEVLEIFEKYELPASVIGEVT--DEGRIRLYYKGEVV 345
>gnl|CDD|162715 TIGR02124, hypE, hydrogenase expression/formation protein HypE.
This family contains HypE (or HupE), a protein required
for expression of catalytically active hydrogenase in
many systems. It appears to be an accessory protein
involved in maturation rather than a regulatory protein
involved in expression. HypE shows considerable homology
to the thiamine-monophosphate kinase ThiL (TIGR01379)
and other enzymes.
Length = 320
Score = 34.9 bits (81), Expect = 0.029
Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 19/175 (10%)
Query: 86 IGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNP-DQATSIIKGIAAGCCQAGCALIGGE 144
IG V VND+ GA+PL+ + P + I+K +A +AG ++ G+
Sbjct: 53 IGKLAVCGTVNDVAVSGAKPLYLSCGFILEEGFPIEDLERIVKSMAEAARKAGVKIVTGD 112
Query: 145 TAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKII 204
T + D + + +G + +S N+ GD I+ + G H VR+ +
Sbjct: 113 TKVVEKGKADGIF-INTTGIGVIPSGIPISAHNLQPGDKIIVSGTIGDHGAAILAVREGL 171
Query: 205 SLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGL 259
D +P+ + L ETLL + A+ T GGL
Sbjct: 172 GFETNLESDCAPL---NGLVETLLN--------------AGPAVHAMRDATRGGL 209
>gnl|CDD|161898 TIGR00476, selD, selenium donor protein. In prokaryotes, the
incorporation of selenocysteine as the 21st amino acid,
encoded by TGA, requires several elements: SelC is the
tRNA itself, SelD acts as a donor of reduced selenium,
SelA modifies a serine residue on SelC into
selenocysteine, and SelB is a selenocysteine-specific
translation elongation factor. 3-prime or 5-prime
non-coding elements of mRNA have been found as probable
structures for directing selenocysteine incorporation.
This model describes SelD, known as selenophosphate
synthetase, selenium donor protein, and selenide,water
dikinase. SelD provides reduced selenium for the
selenium transferase SelA. This protein itself contains
selenocysteine in many species; any sequence not
aligning to the beginning of the model is likely have
selenocysteine residue incorrectly interpreted as a stop
codon upstream of the given sequence. The SelD protein
also provides selenophosphate for the enzyme tRNA
2-selenouridine synthase, which catalyzes a tRNA base
modification. All genomes with SelD should make
selenocysteine, selenouridine, or both.
Length = 347
Score = 30.2 bits (68), Expect = 0.86
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 116 QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSP 175
+L + +I+G C +AG +L GG T P G G +E+++P
Sbjct: 113 KLTIEVMREVIQGFKDACREAGTSLTGGHTILNPWPV------FGGAVTGVCPEEEVITP 166
Query: 176 ENVCAGD-LILGLP 188
GD LIL P
Sbjct: 167 SGAQVGDVLILTKP 180
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 30.1 bits (68), Expect = 1.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 304 FNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVT 340
F +G+V+ V N D +++K +IG+VT
Sbjct: 924 FAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIGQVT 960
>gnl|CDD|162749 TIGR02181, GRX_bact, Glutaredoxin, GrxC family. This family of
glutaredoxins includes the E. coli protein GrxC (Grx3)
which appears to have a secondary role in reducing
ribonucleotide reductase (in the absence of GrxA)
possibly indicating a role in the reduction of other
protein disulfides.
Length = 79
Score = 29.1 bits (66), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 13/46 (28%)
Query: 20 AGNRTVTQIKSAVKSTKRAGTIGE--IGGFGGLFDLKKAGFVDPIL 63
+G RTV QI IG+ +GG L+ L + G +DP+L
Sbjct: 45 SGRRTVPQI-----------FIGDVHVGGCDDLYALDREGKLDPLL 79
>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine
synthase, clade II. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This model represents a second clade of these enzymes
found in Clostridia, Bifidobacteria and Streptococcus
species. This enzyme performs the fourth step in IMP
biosynthesis (the precursor of all purines) from PRPP.
Length = 1239
Score = 29.0 bits (65), Expect = 2.0
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 135 QAGCALIGGETAEMPGLYHDRDY--DLAGFAVGAVERKELLSPENVCAGDLIL------- 185
G IGG+ + M G + + L FAV + ++SPE AG+ I
Sbjct: 769 DLGLPAIGGKDS-MSGTFEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQAL 827
Query: 186 --GLPSSGLHSNGFALVRKII 204
G L FA + ++I
Sbjct: 828 EDGTIDFDLLKENFAQIEELI 848
>gnl|CDD|150429 pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly
chaperone) family of proteins is found in bacteria,
archaea and eukaryotes. Proteins in this family are
typically between 247 and 307 amino acids in length.
These proteins function as a chaperone for the 26S
proteasome. The 26S proteasome mediates
ubiquitin-dependent proteolysis in eukaryotic cells. A
number of studies including very recent ones have
revealed that assembly of its 20S catalytic core
particle is an ordered process that involves several
conserved proteasome assembly chaperones (PACs). Two
heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4,
promote the assembly of rings composed of seven alpha
subunits.
Length = 177
Score = 28.4 bits (64), Expect = 3.2
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 183 LILGLPSSGL----------HSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTR 232
LI G P +G S V +I S ++ P + G+ L P
Sbjct: 1 LIEGFPDAGNVGQLAVDHLIESLEAEKVGEIDSDELFPFRGRRPQVTFDEGGKILWPPLE 60
Query: 233 IYVSPLLKIL 242
+Y +L
Sbjct: 61 LYYLKDRDLL 70
>gnl|CDD|131955 TIGR02909, spore_YkwD, uncharacterized protein, YkwD family.
Members of this protein family represent a subset of
those belonging to Pfam family pfam00188 (SCP-like
extracellular protein). Based on currently cuttoffs for
this model, all member proteins are found in Bacteria
capable of endospore formation. Members include a named
but uncharacterized protein, YkwD of Bacillus subtilis.
Only the C-terminal region is well-conserved and is
included in the seed alignment for this model. Three
members of this family have an N-terminal domain
homologous to the spore coat assembly protein SafA.
Length = 127
Score = 27.8 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 5 RKRGLTYGQAGVNIEAGNRTVTQIKSA 31
+K G++Y AG NI GN TV + +A
Sbjct: 62 KKFGISYRMAGENIAYGNSTVEAVHNA 88
>gnl|CDD|177603 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 27.7 bits (62), Expect = 5.5
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357
G+VI V P + ++ + + N IG V + + +L
Sbjct: 915 GVVIEVPPSHLSAVLTRLRSRNIICYPIGTVGPSGPSNTFSVSHNGTVL 963
>gnl|CDD|183967 PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional.
Length = 303
Score = 27.6 bits (62), Expect = 5.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 256 GGGL------TENIPRAIPAHLTASINLNSVEVPQII 286
GGGL E +P+ +P HL L VP+I
Sbjct: 252 GGGLSNFDAIYEQLPKRLPRHL-----LPVARVPRIE 283
>gnl|CDD|179176 PRK00943, PRK00943, selenophosphate synthetase; Provisional.
Length = 347
Score = 27.5 bits (62), Expect = 5.8
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 97 DILTHGAEPLFFLDYLA--TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154
DI G +P+ + L ++L P+ A +++G A C QAG L GG + + P +
Sbjct: 91 DIYAMGGKPIMAIAILGWPINKLPPEVAREVLEGGRAACRQAGIPLAGGHSIDAP----E 146
Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGD-LILGLP 188
+ LA G V + + AGD L L P
Sbjct: 147 PIFGLA--VTGVVPPERVKRNATAQAGDKLFLTKP 179
>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 601
Score = 27.1 bits (60), Expect = 7.0
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 95 VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154
+ D+L GA P D L S++ II+GIA G +GGE H+
Sbjct: 90 IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGELRISSLYAHN 145
Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGDLIL----GLPSSGLHSNGFA 198
++ A G V L+ + G +I+ G+H FA
Sbjct: 146 PLVNV--LAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASFA 191
>gnl|CDD|162549 TIGR01828, pyru_phos_dikin, pyruvate, phosphate dikinase. This
model represents pyruvate,phosphate dikinase, also
called pyruvate,orthophosphate dikinase. It is similar
in sequence to other PEP-utilizing enzymes.
Length = 856
Score = 27.3 bits (61), Expect = 7.0
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 20/68 (29%)
Query: 59 VDPILVSSSDGVGTKLKIAIETGK----NDTIGIDLVAMCVNDILTHGAEP---LFF--- 108
DP GVG +++A+E G+ N +GI C HG +P F
Sbjct: 792 KDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGI-----CGE----HGGDPSSIEFCHKI 842
Query: 109 -LDYLATS 115
L+Y++ S
Sbjct: 843 GLNYVSCS 850
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 27.0 bits (60), Expect = 8.5
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 232 RIYVSPL-LKILRKTGKIKALAHI 254
R++ SP + +LR+ G+I ALAH
Sbjct: 171 RLFKSPEEIAVLRRAGEISALAHT 194
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,823,830
Number of extensions: 379272
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 28
Length of query: 357
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 263
Effective length of database: 3,963,321
Effective search space: 1042353423
Effective search space used: 1042353423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)