RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] (357 letters) >2zod_A Selenophosphate Synthetase {Aquifex Aeolicus} (A:) Length = 345 Score = 158 bits (399), Expect = 1e-39 Identities = 52/369 (14%), Positives = 106/369 (28%), Gaps = 57/369 (15%) Query: 1 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60 H + +G + G + +I T+ IG G+++ Sbjct: 7 GRHMVELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDESTLVSIGDDAGVYE-----HNG 61 Query: 61 PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATS--QLN 118 I V + D + + G A ++D+ G P+ L + +L+ Sbjct: 62 IIWVYTVDIITPVVNDP------YLWGAISTANALSDVYAMGGIPVNALAISCFNNCELD 115 Query: 119 PDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENV 178 + +I+G +A L+GG T + G + ++ Sbjct: 116 IEIFREVIRGALDKLREAKTVLLGGHTIDDKE------PKFGLSVAGICPEGKYITQSGA 169 Query: 179 CAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPL 238 G L++ G L I+ ++ + ++ Sbjct: 170 QVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIE----------------NMLALNDK 213 Query: 239 LKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKKAHVKP 297 + L + A +TG GL + ++ A I V Q+ L KK Sbjct: 214 ARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPK 273 Query: 298 AE---------------------VLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILI 336 +L G++ ++ + + I + +E N +I Sbjct: 274 GAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWII 333 Query: 337 GEVTQRSEK 345 GE + Sbjct: 334 GETIAENVL 342 >2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} (A:1-171) Length = 171 Score = 151 bits (383), Expect = 1e-37 Identities = 97/169 (57%), Positives = 125/169 (73%) Query: 6 KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65 Y QAGV+IEAG + V +K V+ T R +G IGGFGGLFDL G+ P+L+S Sbjct: 2 HMAKAYKQAGVDIEAGYQAVALMKEHVQKTMRPEVLGGIGGFGGLFDLSALGYRQPVLIS 61 Query: 66 SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125 +DGVGTKLK+A ++DTIGID VAMCVNDI+ GAEPLFFLDY+A + P++ +I Sbjct: 62 GTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAI 121 Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLS 174 +KG+A GC +AGCALIGGETAEMPG+Y + +YDLAGFAVG E++ L++ Sbjct: 122 VKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLIT 170 >1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR synthetase, PURM, purine biosynthesis, trifunctional enzyme, PURL; 2.50A {Escherichia coli} (A:1-172) Length = 172 Score = 147 bits (373), Expect = 2e-36 Identities = 97/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%) Query: 6 KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65 K L+Y AGV+I+AGN V +IK VK T+R +G +GGFG L L + +P+LVS Sbjct: 4 KTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALP-QKYREPVLVS 62 Query: 66 SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125 +DGVGTKL++A++ ++DTIGIDLVAMCVND++ GAEPLFFLDY AT +L+ D A+++ Sbjct: 63 GTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAV 122 Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLS 174 I GIA GC Q+GC+L+GGETAEMPG+YH DYD+AGF VG VE+ E++ Sbjct: 123 ISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIID 171 >2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} (A:1-169) Length = 169 Score = 146 bits (370), Expect = 3e-36 Identities = 96/166 (57%), Positives = 125/166 (75%) Query: 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68 Y QAGV+IEAG V+++K V++T R +G +GGFGG+FDL K +P+LVS +D Sbjct: 3 NAYKQAGVDIEAGYEAVSRMKKHVQTTMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTD 62 Query: 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128 GVGTKL +A K+DTIGID VAMCVNDI+ GAEPLFFLDY+A + P + +I+KG Sbjct: 63 GVGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKG 122 Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLS 174 I+ GC QAGCALIGGETAEMPG+Y +YDLAGF VG V++K++++ Sbjct: 123 ISEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVT 168 >2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} (A:1-141) Length = 141 Score = 139 bits (351), Expect = 6e-34 Identities = 84/137 (61%), Positives = 101/137 (73%) Query: 37 RAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVN 96 ++GGF GLFDLK AGF DP+L S +DGVGTKLKIA K+DTIG DLVAMCVN Sbjct: 3 HHHHKVDLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVN 62 Query: 97 DILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD 156 DIL GAEPLFFLDY + +L+ +++ GIA C +AGCAL+GGETAEMP +Y + Sbjct: 63 DILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGE 122 Query: 157 YDLAGFAVGAVERKELL 173 YDLAGFAVGA+ER + L Sbjct: 123 YDLAGFAVGAMERDQKL 139 >2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} (A:142-334) Length = 193 Score = 137 bits (346), Expect = 2e-33 Identities = 77/180 (42%), Positives = 117/180 (65%), Gaps = 2/180 (1%) Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSE-HSLGETLLTPTRIY 234 E + GD+++G+ SSGLHSNGF+LVRKI++ S L + P+P +LG+ LLTPTRIY Sbjct: 2 ERITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGDQTLGDLLLTPTRIY 61 Query: 235 VSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAH 294 LL + ++G +KA AHITGGGL ENIPR +P L ++ + +P++ SWL ++ H Sbjct: 62 SHSLLP-VLRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPRVFSWLQQEGH 120 Query: 295 VKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGS 354 + E+ RTFNCG+G V++V + + I++ Q++ E +IG V R+E SP + + Sbjct: 121 LSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVVARAEGSPRVKVKNL 180 >2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} (A:172-348) Length = 177 Score = 136 bits (342), Expect = 5e-33 Identities = 70/168 (41%), Positives = 98/168 (58%), Gaps = 1/168 (0%) Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235 E + AGD ++GLPSSGLHSNG++LVR+I+ D + LGE LL PTRIY Sbjct: 1 ETIQAGDALVGLPSSGLHSNGYSLVRRIVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYA 60 Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295 L +R+ IK +AHITGGGL ENIPR +P + A I L S + I +L +K + Sbjct: 61 KLLRS-VRERFTIKGMAHITGGGLIENIPRMLPPGIGARIQLGSWPILPIFDFLREKGSL 119 Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 + E+ FN GIG+V+ V P+ +++ E E +IGEV + + Sbjct: 120 EEEEMFSVFNMGIGLVLAVSPETAAPLVEWLSERGEPAYIIGEVAKGA 167 >2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} (A:170-346) Length = 177 Score = 132 bits (332), Expect = 8e-32 Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 1/168 (0%) Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235 E + AG +++GL SSG+HSNG++LVRK++ D E LGE LL PT+IYV Sbjct: 1 EKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDGELSLDRIYGRLELPLGEELLKPTKIYV 60 Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295 P+L+ L K ++ +AHITGGG ENIPR +P + A I L S ++ I S L + + Sbjct: 61 KPILE-LLKNHEVYGMAHITGGGFIENIPRMLPEGIGAEIELGSWKIQPIFSLLQEVGKL 119 Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 + E+ FN GIGMV+ V ++ I++ +E E +IG Q + Sbjct: 120 EEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLEEQGETARIIGRTVQGA 167 >1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR synthetase, PURM, purine biosynthesis, trifunctional enzyme, PURL; 2.50A {Escherichia coli} (A:173-345) Length = 173 Score = 129 bits (324), Expect = 8e-31 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 3/169 (1%) Query: 177 NVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVS 236 V GD+++ L SSG HSNG++LVRKI+ +S + L + LL PTRIYV Sbjct: 2 KVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDG--KPLADHLLAPTRIYVK 59 Query: 237 PLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVK 296 +L+++ K + A+AH+TGGG ENIPR +P + A I+ +S + P++ +WL +V+ Sbjct: 60 SVLELIEK-VDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVE 118 Query: 297 PAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEK 345 E+ RTFNCG+GM+I + D + N EN IG + + Sbjct: 119 HHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSE 167 >2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis KOD1} (A:1-159) Length = 159 Score = 120 bits (302), Expect = 3e-28 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 9/162 (5%) Query: 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68 + + G ++ + T + G IG D F D +V + D Sbjct: 1 MGEKIKLEHGAGGEIMEELLRDVILKTLTLKSAGGIGLDALD-DGATIPFGDKHIVFTID 59 Query: 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LNPDQATSIIK 127 G K IG V+ VND+ GAEP+ + + + L+ + ++K Sbjct: 60 GHTVKPLFFPG----GDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVLK 115 Query: 128 GIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVER 169 + + ++ G+T + + + +G E Sbjct: 116 SMDETAREVPVPIVTGDTKVVEDK---IEMFVITAGIGIAEH 154 >3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} (A:178-394) Length = 217 Score = 120 bits (301), Expect = 4e-28 Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 21/231 (9%) Query: 127 KGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILG 186 + I AG G A G + E L + +L+ + + D + Sbjct: 1 ENIKAGNVIVGFASYGQTSYETEYNGGXGSNGLT--SARHDVFNNVLASKYPESFDPKVP 58 Query: 187 LPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILR-KT 245 + G+ +L+PTR Y +I+ Sbjct: 59 ENLVYSGEXNLTDPYL---------------NVPLDAGKLVLSPTRTYAPLXKEIIHQYK 103 Query: 246 GKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFN 305 GK+ + H +GGG T+ + T I N +VP + + +++ E + FN Sbjct: 104 GKLDGVVHCSGGGQTKVLHF--TDATTHIIKDNLFDVPPLFQLIQGQSNTPWEEXYKVFN 161 Query: 306 CGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLI 356 G + I + + I ++ N +IG V + G Sbjct: 162 XGHRLEIYTDAAHAEGXIAIAKKFNIEAKIIGRVEAPVAG-KRLTITGPQG 211 >2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A (A:1-158) Length = 158 Score = 117 bits (295), Expect = 2e-27 Identities = 25/156 (16%), Positives = 43/156 (27%), Gaps = 7/156 (4%) Query: 19 EAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAI 78 I S A DL + L S+D Sbjct: 8 HHHGSMQQLINSLFMEA-FANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFFP 66 Query: 79 ETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAG 137 IG + ND+ GA P + + L + +++ +A AG Sbjct: 67 G----GNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKAVVTSMAETARTAG 122 Query: 138 CALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELL 173 A++ G+T + D + +GA+ Sbjct: 123 IAIVTGDTKVVQRGAAD-KLFINTAGMGAIPTNIHW 157 >3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* (A:190-394) Length = 205 Score = 115 bits (289), Expect = 8e-27 Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 7/176 (3%) Query: 175 PENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIY 234 P+N GD+++ G I K + + Sbjct: 1 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARL 60 Query: 235 VSPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKA 293 ++ A ITG G+ + A S ++++ V ++ +SK Sbjct: 61 NRTAAGLMHT-FNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKAC 119 Query: 294 HVKPAEV-LRTFNCGIGMVIIVHPDNKDCIIKKFQEN----NENIILIGEVTQRSE 344 + G++I + + + + +IG V + + Sbjct: 120 GNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNR 175 >3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} (A:1-177) Length = 177 Score = 111 bits (280), Expect = 1e-25 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 25/183 (13%) Query: 7 RGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSS 66 Y Q GV+ + + IKS K F + G + + Sbjct: 4 SSDRYXQRGVSSQKED-VHKAIKSIDKGIYP-------RAFCKIIPDILGGDPEYCNIXH 55 Query: 67 SDGVGTKLKIAIETGKN-------DTIGIDLVAMCVNDILT-HGAEPLFFLDYLATS--Q 116 +DG GTK +A K I D V ++D++ + + + + Sbjct: 56 ADGAGTKSSLAYVYWKETGDISVWKGIAQDAVIXNIDDLICVGAVDNILLSSTIGRNKNL 115 Query: 117 LNPDQATSIIKGIAAGC-----CQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171 + + +II G G GGETA++ L R + +R++ Sbjct: 116 IPGEVLAAIINGTEEVLQXLRDNGIGIYSTGGETADVGDLV--RTIIVDSTVTCRXKRQD 173 Query: 172 LLS 174 ++S Sbjct: 174 VIS 176 >2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus HB8} (A:24-146) Length = 123 Score = 108 bits (272), Expect = 1e-24 Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 13/131 (9%) Query: 40 TIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDIL 99 G G + + +DG + G + +G VA +D+L Sbjct: 1 APLPPGDDAGGVWAE-----GRAWLLKTDGFLYREVALKGMGPFE-VGFRGVAATASDLL 54 Query: 100 THGAEPLFFLDYLAT-SQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD 158 PL F L L +++G A + G L+GG+T Sbjct: 55 AKMGRPLGFTLGLFLPEDLEEGFVLELVRGAAEAAKRLGAFLLGGDTNRGVE------VA 108 Query: 159 LAGFAVGAVER 169 L E Sbjct: 109 LTVSGYALAEA 119 >3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} (A:60-178) Length = 119 Score = 106 bits (265), Expect = 6e-24 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%) Query: 44 IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103 IG + L+ ++D + + +G +++ V+D++ +G Sbjct: 1 IGDDTAPVEYC-----SKKLLLTTDVLNEGVHFLRSYIPEA-VGWKAISVNVSDVIANGG 54 Query: 104 EPLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162 P + L L L G+ C C ++GG ++ + ++ F Sbjct: 55 LPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSEKI------GISVF 108 Query: 163 AVGAVER 169 VG ER Sbjct: 109 LVGETER 115 >2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* (A:38-158) Length = 121 Score = 103 bits (259), Expect = 3e-23 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 12/131 (9%) Query: 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAE 104 DL L S+D IG V VND+ GA Sbjct: 2 LNDAARLDL------TGPLAMSTDSYTVDPIFF----PGGDIGTLAVHGTVNDVSMLGAR 51 Query: 105 PLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFA 163 P + L+ D ++ + +AG ++ G+T +P D + Sbjct: 52 PRYLSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACD-KMFINTTG 110 Query: 164 VGAVERKELLS 174 +G + S Sbjct: 111 IGEILVDPAPS 121 >1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} (A:29-45,A:179-359) Length = 198 Score = 103 bits (259), Expect = 3e-23 Identities = 16/172 (9%), Positives = 54/172 (31%), Gaps = 22/172 (12%) Query: 176 ENVCAGDLIL--GLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRI 233 + G +I+ G + +G + + ++ + + + + Sbjct: 18 KASRPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLS---------IQVGDPFAEKX 68 Query: 234 YVSPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKK 292 + L+ + + G ++ + GG+ +L A ++L+ V + + Sbjct: 69 LIEAFLEXVEE-GLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDXEP--- 124 Query: 293 AHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344 + ++ P I++ +++ ++ EV + Sbjct: 125 ------WEILISESQERXAVVTSPQKASRILEIARKHLLFGDVVAEVIEEPV 170 >3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} (A:179-342) Length = 164 Score = 99.0 bits (246), Expect = 9e-22 Identities = 17/168 (10%), Positives = 38/168 (22%), Gaps = 21/168 (12%) Query: 177 NVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVS 236 GD + + G G L+ + + R Sbjct: 2 GARLGDSVFVSGTLGDSRAGLELLLMEKEEYEPFELA------------LIQRHLRPTAR 49 Query: 237 PLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVK 296 + A I+ G + + A + + I + + + +K Sbjct: 50 IDYVKHIQ-KYANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGKN 108 Query: 297 PAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344 P E ++ + ++ IG V + Sbjct: 109 PIEYALFGGEDYQLLFTHPKE--------RWNPFLDMTEIGRVEEGEG 148 >2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus HB8} (A:147-311) Length = 165 Score = 97.8 bits (243), Expect = 2e-21 Identities = 17/168 (10%), Positives = 39/168 (23%), Gaps = 21/168 (12%) Query: 177 NVCAGDLILGL-PSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235 GDL+ G + SL + + Sbjct: 1 KALPGDLLYLAGDRWGRTGAAIRAHYEGRSLE---------------GFPKIREAAFYPL 45 Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295 L + G ++ + G A L + + ++ + + + Sbjct: 46 PRLELLALS-GLLRGSLDSSDGLAETLWQLA---DLGVGVEVEALPLYPDVLAFAGSEEA 101 Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 VL V++V + + + + + G V Sbjct: 102 ALELVL-YGGEEFEAVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGE 148 >1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} (A:212-226,A:436-615) Length = 195 Score = 96.7 bits (240), Expect = 4e-21 Identities = 20/172 (11%), Positives = 43/172 (25%), Gaps = 17/172 (9%) Query: 176 ENVCAGDLI--LGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRI 233 + G + LG P+ + G A S S + + Sbjct: 16 GEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQR----DNPEMERRCQE 71 Query: 234 YVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKK 292 + ++ I + + GGL+ +P + L + + Sbjct: 72 VIDRCWQLGDA-NPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSP--- 127 Query: 293 AHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344 + V+ V D + + +IG+ T+ Sbjct: 128 ------LEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQH 173 >3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* (A:59-189) Length = 131 Score = 94.2 bits (234), Expect = 2e-20 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 21/143 (14%) Query: 37 RAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVN 96 IG + L+ LV ++D + + +G A ++ Sbjct: 3 AVMPRLGIGMDTCVIPLRHG---GLSLVQTTDYIYPIVDDP------YMMGRIACANVLS 53 Query: 97 DILTHGAEPLFFLDYLATS------QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPG 150 D+ G + L + II+G +AG ++ GG+T P Sbjct: 54 DLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPW 113 Query: 151 LYHDRDYDLAGFAVGAVERKELL 173 + L G A + E + Sbjct: 114 IV------LGGVATTVCQPNEFI 130 >2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* (A:159-343) Length = 185 Score = 90.9 bits (225), Expect = 2e-19 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 26/185 (14%) Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235 + GD IL S G H R+ ++ + + + Sbjct: 2 DRARPGDAILISGSMGDHGLTILSQRQGLNF-----------------AADVCSDSASLN 44 Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAH 294 + K++ + G I L T GGL + A + + +V V + + Sbjct: 45 RVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRNGCSFLG 104 Query: 295 VKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGEVTQRSEKSPPILYQ 352 + P + ++ I+ + + + +E E+ IG V E Sbjct: 105 LDPLYLANEGK----LICILPEERAEAALAVLREGPHGEHAARIGSVKSVGEL--GAARA 158 Query: 353 GSLIL 357 G +++ Sbjct: 159 GQVVM 163 >2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis KOD1} (A:160-338) Length = 179 Score = 81.6 bits (201), Expect = 1e-16 Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 24/180 (13%) Query: 180 AGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLL 239 GD +L + G H R+ I+ + ++ + P V + Sbjct: 4 VGDAVLVSGTIGDHGIALMSHREGIAFE--------------TELKSDVAPIWDVVKAVA 49 Query: 240 KILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKKAHVKPA 298 + + I A+ T GL+ + ++ + + + + S+ + P Sbjct: 50 ETIGW-ENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPY 108 Query: 299 EVLRTFNCGIGMVIIVHPDNKDCIIKKFQ--ENNENIILIGEVTQRSEKSPPILYQGSLI 356 +V +V++V + + ++ + E N +IGEV +L + + Sbjct: 109 DVANEGK----VVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRG--KVLLETGIG 162 >2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A (A:159-334) Length = 176 Score = 80.5 bits (198), Expect = 3e-16 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 25/171 (14%) Query: 177 NVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVS 236 + AGD++L + G H +R+ + L L++ + Sbjct: 3 TLTAGDILLVSGTLGDHGATILNLRE-----------------QLGLDGELVSDCAVLTP 45 Query: 237 PLLKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKKAHV 295 + + +KAL T GG+ + A I+ +++ V + + + + Sbjct: 46 LIQTLRDI-PGVKALRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGL 104 Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGEVTQRSE 344 +VI V + + ++ + ++ LIGEV +R Sbjct: 105 DALNFANEGK----LVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERKG 151 >1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} (A:634-686,A:826-1022) Length = 250 Score = 41.4 bits (97), Expect = 2e-04 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 18/106 (16%) Query: 238 LLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAHVK 296 ++ L K+ A + GGL + A H +++ ++ Sbjct: 105 AMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGDD------------- 151 Query: 297 PAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN--ENIILIGEVT 340 L FN +G VI V +++D + + + + +G+ Sbjct: 152 HLAAL--FNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQAL 195 >1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} (A:256-435) Length = 180 Score = 29.1 bits (65), Expect = 0.87 Identities = 14/82 (17%), Positives = 19/82 (23%), Gaps = 23/82 (28%) Query: 91 VAMCVNDIL--THGAEPLFFLDYLATSQLN---------------------PDQATSIIK 127 + D GA+P L + S L D T Sbjct: 65 SGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPL 124 Query: 128 GIAAGCCQAGCALIGGETAEMP 149 G AA + G + G Sbjct: 125 GGAAFNNEFGRPALTGYFRTYE 146 >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* (A:245-326,A:364-520) Length = 239 Score = 27.6 bits (61), Expect = 2.9 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 8/116 (6%) Query: 223 LGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE-----NIPRAIP--AHLTASI 275 + E L R++ S L +T + L + L E + R P L Sbjct: 42 VEEQNLKDLRVWTSQLKS-TIQTAEALRLPYEQWKALNEIDAQDLVQRLEPVIMELERQE 100 Query: 276 NLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNE 331 N+ + ++ L K AE + C + V+ + P C ++ N E Sbjct: 101 NVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVE 156 >1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} (A:63-178,A:360-388) Length = 145 Score = 27.0 bits (60), Expect = 4.0 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 14/82 (17%) Query: 95 VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154 + D+L GA P D L S++ II+GIA G +GGE Sbjct: 42 IRDVLAXGARPTAIFDSLHXSRI----IDGIIEGIADYGNSIGVPTVGGEL------RIS 91 Query: 155 RDYD----LAGFAVGAVERKEL 172 Y + A G V L Sbjct: 92 SLYAHNPLVNVLAAGVVRNDXL 113 >2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A {Leishmania donovani} PDB: 3h5z_A* (A:) Length = 421 Score = 26.3 bits (58), Expect = 6.5 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 13/77 (16%) Query: 266 AIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKK 325 +P L + K E ++ + I N C+ K+ Sbjct: 128 GVPVTL---------RMGTPKYMKVKAQEKGQEEEAAKYDAPRHICEI----NFLCVHKQ 174 Query: 326 FQENNENIILIGEVTQR 342 +E ILI EVT+R Sbjct: 175 LREKRLAPILIKEVTRR 191 >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* (C:) Length = 249 Score = 26.2 bits (57), Expect = 6.8 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 9/146 (6%) Query: 97 DILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD 156 + A L + Q P AT + + + + A L Sbjct: 62 PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG 121 Query: 157 YDLAGFAVGAVERKEL------LSPENVCAGD-LILGLPSSGLHSNGFALVRKIISLSQL 209 + G +R L ++P+ AG L+L P + L + + KI LS L Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKI--LSAL 179 Query: 210 SWKDPSPISSEHSLGETLLTPTRIYV 235 S + + + S H L TL R ++ Sbjct: 180 SQQGLAIVXSSHDLNHTLRHAHRAWL 205 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0497 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,631,616 Number of extensions: 116800 Number of successful extensions: 294 Number of sequences better than 10.0: 1 Number of HSP's gapped: 261 Number of HSP's successfully gapped: 32 Length of query: 357 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 268 Effective length of database: 1,947,404 Effective search space: 521904272 Effective search space used: 521904272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.5 bits)