RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole
synthetase [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)



>2zod_A Selenophosphate Synthetase {Aquifex Aeolicus} (A:)
          Length = 345

 Score =  158 bits (399), Expect = 1e-39
 Identities = 52/369 (14%), Positives = 106/369 (28%), Gaps = 57/369 (15%)

Query: 1   MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60
             H  +       +G   + G   + +I           T+  IG   G+++        
Sbjct: 7   GRHMVELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDESTLVSIGDDAGVYE-----HNG 61

Query: 61  PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATS--QLN 118
            I V + D +   +            G    A  ++D+   G  P+  L     +  +L+
Sbjct: 62  IIWVYTVDIITPVVNDP------YLWGAISTANALSDVYAMGGIPVNALAISCFNNCELD 115

Query: 119 PDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENV 178
            +    +I+G      +A   L+GG T +                 G     + ++    
Sbjct: 116 IEIFREVIRGALDKLREAKTVLLGGHTIDDKE------PKFGLSVAGICPEGKYITQSGA 169

Query: 179 CAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPL 238
             G L++     G       L   I+    ++                      + ++  
Sbjct: 170 QVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIE----------------NMLALNDK 213

Query: 239 LKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKKAHVKP 297
            + L  +    A   +TG GL  +        ++ A I    V   Q+   L KK     
Sbjct: 214 ARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPK 273

Query: 298 AE---------------------VLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILI 336
                                  +L       G++  ++ +  + I +  +E   N  +I
Sbjct: 274 GAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWII 333

Query: 337 GEVTQRSEK 345
           GE    +  
Sbjct: 334 GETIAENVL 342


>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and
           beta proteins, cytoplasm, purine biosynthesis,
           structural genomics, NPPSFA; 2.20A {Geobacillus
           kaustophilus} (A:1-171)
          Length = 171

 Score =  151 bits (383), Expect = 1e-37
 Identities = 97/169 (57%), Positives = 125/169 (73%)

Query: 6   KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65
                Y QAGV+IEAG + V  +K  V+ T R   +G IGGFGGLFDL   G+  P+L+S
Sbjct: 2   HMAKAYKQAGVDIEAGYQAVALMKEHVQKTMRPEVLGGIGGFGGLFDLSALGYRQPVLIS 61

Query: 66  SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125
            +DGVGTKLK+A    ++DTIGID VAMCVNDI+  GAEPLFFLDY+A  +  P++  +I
Sbjct: 62  GTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAI 121

Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLS 174
           +KG+A GC +AGCALIGGETAEMPG+Y + +YDLAGFAVG  E++ L++
Sbjct: 122 VKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLIT 170


>1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR
           synthetase, PURM, purine biosynthesis, trifunctional
           enzyme, PURL; 2.50A {Escherichia coli} (A:1-172)
          Length = 172

 Score =  147 bits (373), Expect = 2e-36
 Identities = 97/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)

Query: 6   KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65
           K  L+Y  AGV+I+AGN  V +IK  VK T+R   +G +GGFG L  L    + +P+LVS
Sbjct: 4   KTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALP-QKYREPVLVS 62

Query: 66  SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125
            +DGVGTKL++A++  ++DTIGIDLVAMCVND++  GAEPLFFLDY AT +L+ D A+++
Sbjct: 63  GTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAV 122

Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLS 174
           I GIA GC Q+GC+L+GGETAEMPG+YH  DYD+AGF VG VE+ E++ 
Sbjct: 123 ISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIID 171


>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de
           novo purine biosynthesis, AIR synthase family, spine,
           FGAR amidotransferase; 2.31A {Bacillus anthracis}
           (A:1-169)
          Length = 169

 Score =  146 bits (370), Expect = 3e-36
 Identities = 96/166 (57%), Positives = 125/166 (75%)

Query: 9   LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68
             Y QAGV+IEAG   V+++K  V++T R   +G +GGFGG+FDL K    +P+LVS +D
Sbjct: 3   NAYKQAGVDIEAGYEAVSRMKKHVQTTMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTD 62

Query: 69  GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
           GVGTKL +A    K+DTIGID VAMCVNDI+  GAEPLFFLDY+A  +  P +  +I+KG
Sbjct: 63  GVGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKG 122

Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLS 174
           I+ GC QAGCALIGGETAEMPG+Y   +YDLAGF VG V++K++++
Sbjct: 123 ISEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVT 168


>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase;
           multifunctional enzyme, structural genomics consortium,
           nucleotide-binding, purine biosynthesis; 2.10A {Homo
           sapiens} (A:1-141)
          Length = 141

 Score =  139 bits (351), Expect = 6e-34
 Identities = 84/137 (61%), Positives = 101/137 (73%)

Query: 37  RAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVN 96
                 ++GGF GLFDLK AGF DP+L S +DGVGTKLKIA    K+DTIG DLVAMCVN
Sbjct: 3   HHHHKVDLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVN 62

Query: 97  DILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD 156
           DIL  GAEPLFFLDY +  +L+     +++ GIA  C +AGCAL+GGETAEMP +Y   +
Sbjct: 63  DILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGE 122

Query: 157 YDLAGFAVGAVERKELL 173
           YDLAGFAVGA+ER + L
Sbjct: 123 YDLAGFAVGAMERDQKL 139


>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase;
           multifunctional enzyme, structural genomics consortium,
           nucleotide-binding, purine biosynthesis; 2.10A {Homo
           sapiens} (A:142-334)
          Length = 193

 Score =  137 bits (346), Expect = 2e-33
 Identities = 77/180 (42%), Positives = 117/180 (65%), Gaps = 2/180 (1%)

Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSE-HSLGETLLTPTRIY 234
           E +  GD+++G+ SSGLHSNGF+LVRKI++ S L +  P+P      +LG+ LLTPTRIY
Sbjct: 2   ERITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGDQTLGDLLLTPTRIY 61

Query: 235 VSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAH 294
              LL  + ++G +KA AHITGGGL ENIPR +P  L   ++  +  +P++ SWL ++ H
Sbjct: 62  SHSLLP-VLRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPRVFSWLQQEGH 120

Query: 295 VKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGS 354
           +   E+ RTFNCG+G V++V  +  + I++  Q++ E   +IG V  R+E SP +  +  
Sbjct: 121 LSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVVARAEGSPRVKVKNL 180


>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and
           beta proteins, cytoplasm, purine biosynthesis,
           structural genomics, NPPSFA; 2.20A {Geobacillus
           kaustophilus} (A:172-348)
          Length = 177

 Score =  136 bits (342), Expect = 5e-33
 Identities = 70/168 (41%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235
           E + AGD ++GLPSSGLHSNG++LVR+I+        D      +  LGE LL PTRIY 
Sbjct: 1   ETIQAGDALVGLPSSGLHSNGYSLVRRIVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYA 60

Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295
             L   +R+   IK +AHITGGGL ENIPR +P  + A I L S  +  I  +L +K  +
Sbjct: 61  KLLRS-VRERFTIKGMAHITGGGLIENIPRMLPPGIGARIQLGSWPILPIFDFLREKGSL 119

Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343
           +  E+   FN GIG+V+ V P+    +++   E  E   +IGEV + +
Sbjct: 120 EEEEMFSVFNMGIGLVLAVSPETAAPLVEWLSERGEPAYIIGEVAKGA 167


>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de
           novo purine biosynthesis, AIR synthase family, spine,
           FGAR amidotransferase; 2.31A {Bacillus anthracis}
           (A:170-346)
          Length = 177

 Score =  132 bits (332), Expect = 8e-32
 Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235
           E + AG +++GL SSG+HSNG++LVRK++        D      E  LGE LL PT+IYV
Sbjct: 1   EKIEAGHVLIGLASSGIHSNGYSLVRKVLLEDGELSLDRIYGRLELPLGEELLKPTKIYV 60

Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295
            P+L+ L K  ++  +AHITGGG  ENIPR +P  + A I L S ++  I S L +   +
Sbjct: 61  KPILE-LLKNHEVYGMAHITGGGFIENIPRMLPEGIGAEIELGSWKIQPIFSLLQEVGKL 119

Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343
           +  E+   FN GIGMV+ V  ++   I++  +E  E   +IG   Q +
Sbjct: 120 EEKEMFNIFNMGIGMVVAVKEEDAKDIVRLLEEQGETARIIGRTVQGA 167


>1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR
           synthetase, PURM, purine biosynthesis, trifunctional
           enzyme, PURL; 2.50A {Escherichia coli} (A:173-345)
          Length = 173

 Score =  129 bits (324), Expect = 8e-31
 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 3/169 (1%)

Query: 177 NVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVS 236
            V  GD+++ L SSG HSNG++LVRKI+ +S    +          L + LL PTRIYV 
Sbjct: 2   KVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDG--KPLADHLLAPTRIYVK 59

Query: 237 PLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVK 296
            +L+++ K   + A+AH+TGGG  ENIPR +P +  A I+ +S + P++ +WL    +V+
Sbjct: 60  SVLELIEK-VDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVE 118

Query: 297 PAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEK 345
             E+ RTFNCG+GM+I +     D  +     N EN   IG +     +
Sbjct: 119 HHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSE 167


>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE]
           hydrogenase maturation, ATPase, transferase; 1.55A
           {Thermococcus kodakarensis KOD1} (A:1-159)
          Length = 159

 Score =  120 bits (302), Expect = 3e-28
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 9/162 (5%)

Query: 9   LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68
           +       +   G      ++  +  T    + G IG      D     F D  +V + D
Sbjct: 1   MGEKIKLEHGAGGEIMEELLRDVILKTLTLKSAGGIGLDALD-DGATIPFGDKHIVFTID 59

Query: 69  GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LNPDQATSIIK 127
           G   K            IG   V+  VND+   GAEP+   + +   + L+ +    ++K
Sbjct: 60  GHTVKPLFFPG----GDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVLK 115

Query: 128 GIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVER 169
            +     +    ++ G+T  +       +  +    +G  E 
Sbjct: 116 SMDETAREVPVPIVTGDTKVVEDK---IEMFVITAGIGIAEH 154


>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
           genomics, joint center for structural genomics, JCSG;
           1.50A {Cytophaga hutchinsonii atcc 33406} (A:178-394)
          Length = 217

 Score =  120 bits (301), Expect = 4e-28
 Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 21/231 (9%)

Query: 127 KGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILG 186
           + I AG    G A  G  + E           L   +        +L+ +   + D  + 
Sbjct: 1   ENIKAGNVIVGFASYGQTSYETEYNGGXGSNGLT--SARHDVFNNVLASKYPESFDPKVP 58

Query: 187 LPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILR-KT 245
                                          +     G+ +L+PTR Y     +I+    
Sbjct: 59  ENLVYSGEXNLTDPYL---------------NVPLDAGKLVLSPTRTYAPLXKEIIHQYK 103

Query: 246 GKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFN 305
           GK+  + H +GGG T+ +        T  I  N  +VP +   +  +++    E  + FN
Sbjct: 104 GKLDGVVHCSGGGQTKVLHF--TDATTHIIKDNLFDVPPLFQLIQGQSNTPWEEXYKVFN 161

Query: 306 CGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLI 356
            G  + I     + +  I   ++ N    +IG V         +   G   
Sbjct: 162 XGHRLEIYTDAAHAEGXIAIAKKFNIEAKIIGRVEAPVAG-KRLTITGPQG 211


>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
           crystallography, structural genomics, BSGI; 2.00A
           {Escherichia coli O157} PDB: 2i6r_A (A:1-158)
          Length = 158

 Score =  117 bits (295), Expect = 2e-27
 Identities = 25/156 (16%), Positives = 43/156 (27%), Gaps = 7/156 (4%)

Query: 19  EAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAI 78
                    I S       A             DL +       L  S+D          
Sbjct: 8   HHHGSMQQLINSLFMEA-FANPWLAEQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFFP 66

Query: 79  ETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAG 137
                  IG   +    ND+   GA P +        + L  +   +++  +A     AG
Sbjct: 67  G----GNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKAVVTSMAETARTAG 122

Query: 138 CALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELL 173
            A++ G+T  +     D    +    +GA+      
Sbjct: 123 IAIVTGDTKVVQRGAAD-KLFINTAGMGAIPTNIHW 157


>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase,
           SELD, ATP-binding, nucleotide-binding, selenium,
           transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
           (A:190-394)
          Length = 205

 Score =  115 bits (289), Expect = 8e-27
 Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 7/176 (3%)

Query: 175 PENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIY 234
           P+N   GD+++     G            I       K            +  +      
Sbjct: 1   PDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARL 60

Query: 235 VSPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKA 293
                 ++       A   ITG G+  +    A       S  ++++ V   ++ +SK  
Sbjct: 61  NRTAAGLMHT-FNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKAC 119

Query: 294 HVKPAEV-LRTFNCGIGMVIIVHPDNKDCIIKKFQEN----NENIILIGEVTQRSE 344
                 +         G++I +  +       + +           +IG V + + 
Sbjct: 120 GNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNR 175


>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
           genomics, joint center for structural genomics, JCSG;
           1.50A {Cytophaga hutchinsonii atcc 33406} (A:1-177)
          Length = 177

 Score =  111 bits (280), Expect = 1e-25
 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 25/183 (13%)

Query: 7   RGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSS 66
               Y Q GV+ +  +     IKS  K             F  +      G  +   +  
Sbjct: 4   SSDRYXQRGVSSQKED-VHKAIKSIDKGIYP-------RAFCKIIPDILGGDPEYCNIXH 55

Query: 67  SDGVGTKLKIAIETGKN-------DTIGIDLVAMCVNDILT-HGAEPLFFLDYLATS--Q 116
           +DG GTK  +A    K          I  D V   ++D++     + +     +  +   
Sbjct: 56  ADGAGTKSSLAYVYWKETGDISVWKGIAQDAVIXNIDDLICVGAVDNILLSSTIGRNKNL 115

Query: 117 LNPDQATSIIKGIAAGC-----CQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171
           +  +   +II G             G    GGETA++  L   R   +        +R++
Sbjct: 116 IPGEVLAAIINGTEEVLQXLRDNGIGIYSTGGETADVGDLV--RTIIVDSTVTCRXKRQD 173

Query: 172 LLS 174
           ++S
Sbjct: 174 VIS 176


>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure,
           transferase; 1.90A {Thermus thermophilus HB8} (A:24-146)
          Length = 123

 Score =  108 bits (272), Expect = 1e-24
 Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 40  TIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDIL 99
                G   G    +         +  +DG   +       G  + +G   VA   +D+L
Sbjct: 1   APLPPGDDAGGVWAE-----GRAWLLKTDGFLYREVALKGMGPFE-VGFRGVAATASDLL 54

Query: 100 THGAEPLFFLDYLAT-SQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD 158
                PL F   L     L       +++G A    + G  L+GG+T             
Sbjct: 55  AKMGRPLGFTLGLFLPEDLEEGFVLELVRGAAEAAKRLGAFLLGGDTNRGVE------VA 108

Query: 159 LAGFAVGAVER 169
           L        E 
Sbjct: 109 LTVSGYALAEA 119


>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta
           structure, transferase; HET: TPP ADP; 1.48A {Aquifex
           aeolicus} (A:60-178)
          Length = 119

 Score =  106 bits (265), Expect = 6e-24
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 44  IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103
           IG      +          L+ ++D +   +           +G   +++ V+D++ +G 
Sbjct: 1   IGDDTAPVEYC-----SKKLLLTTDVLNEGVHFLRSYIPEA-VGWKAISVNVSDVIANGG 54

Query: 104 EPLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162
            P + L  L     L          G+   C    C ++GG  ++   +       ++ F
Sbjct: 55  LPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSEKI------GISVF 108

Query: 163 AVGAVER 169
            VG  ER
Sbjct: 109 LVGETER 115


>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta
           fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
           vulgaris subsp} PDB: 2z1t_A* (A:38-158)
          Length = 121

 Score =  103 bits (259), Expect = 3e-23
 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 12/131 (9%)

Query: 45  GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAE 104
                  DL         L  S+D                 IG   V   VND+   GA 
Sbjct: 2   LNDAARLDL------TGPLAMSTDSYTVDPIFF----PGGDIGTLAVHGTVNDVSMLGAR 51

Query: 105 PLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFA 163
           P +          L+ D    ++  +     +AG  ++ G+T  +P    D    +    
Sbjct: 52  PRYLSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPRGACD-KMFINTTG 110

Query: 164 VGAVERKELLS 174
           +G +      S
Sbjct: 111 IGEILVDPAPS 121


>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246,
           structural genomics, JCSG, PSI, protein structure
           initiative; 2.15A {Thermotoga maritima}
           (A:29-45,A:179-359)
          Length = 198

 Score =  103 bits (259), Expect = 3e-23
 Identities = 16/172 (9%), Positives = 54/172 (31%), Gaps = 22/172 (12%)

Query: 176 ENVCAGDLIL--GLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRI 233
           +    G +I+  G  +     +G +   + ++  + +            +        + 
Sbjct: 18  KASRPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLS---------IQVGDPFAEKX 68

Query: 234 YVSPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKK 292
            +   L+ + + G ++    +  GG+           +L A ++L+ V + +        
Sbjct: 69  LIEAFLEXVEE-GLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDXEP--- 124

Query: 293 AHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344
                   +          ++  P     I++  +++     ++ EV +   
Sbjct: 125 ------WEILISESQERXAVVTSPQKASRILEIARKHLLFGDVVAEVIEEPV 170


>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta
           structure, transferase; HET: TPP ADP; 1.48A {Aquifex
           aeolicus} (A:179-342)
          Length = 164

 Score = 99.0 bits (246), Expect = 9e-22
 Identities = 17/168 (10%), Positives = 38/168 (22%), Gaps = 21/168 (12%)

Query: 177 NVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVS 236
               GD +    + G    G  L+       +                  +    R    
Sbjct: 2   GARLGDSVFVSGTLGDSRAGLELLLMEKEEYEPFELA------------LIQRHLRPTAR 49

Query: 237 PLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVK 296
                  +     A   I+ G + +    A  + +   I    + +   +    +K    
Sbjct: 50  IDYVKHIQ-KYANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGKN 108

Query: 297 PAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344
           P E          ++     +              ++  IG V +   
Sbjct: 109 PIEYALFGGEDYQLLFTHPKE--------RWNPFLDMTEIGRVEEGEG 148


>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure,
           transferase; 1.90A {Thermus thermophilus HB8}
           (A:147-311)
          Length = 165

 Score = 97.8 bits (243), Expect = 2e-21
 Identities = 17/168 (10%), Positives = 39/168 (23%), Gaps = 21/168 (12%)

Query: 177 NVCAGDLILGL-PSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235
               GDL+       G          +  SL                    +       +
Sbjct: 1   KALPGDLLYLAGDRWGRTGAAIRAHYEGRSLE---------------GFPKIREAAFYPL 45

Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295
             L  +    G ++     + G        A    L   + + ++ +   +   +     
Sbjct: 46  PRLELLALS-GLLRGSLDSSDGLAETLWQLA---DLGVGVEVEALPLYPDVLAFAGSEEA 101

Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343
               VL         V++V  +    +  + +     +   G V    
Sbjct: 102 ALELVL-YGGEEFEAVLVVPQEGAAAVEARAKAKGLPLFRAGRVVAGE 148


>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM
           synthetase, PURS, PURQ, formyl glycinamide, ligase; HET:
           CYG ADP; 1.90A {Salmonella typhimurium}
           (A:212-226,A:436-615)
          Length = 195

 Score = 96.7 bits (240), Expect = 4e-21
 Identities = 20/172 (11%), Positives = 43/172 (25%), Gaps = 17/172 (9%)

Query: 176 ENVCAGDLI--LGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRI 233
             +  G  +  LG P+  +   G A        S       S           +    + 
Sbjct: 16  GEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQR----DNPEMERRCQE 71

Query: 234 YVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKK 292
            +    ++      I  +  +  GGL+  +P  +          L  +   +        
Sbjct: 72  VIDRCWQLGDA-NPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSP--- 127

Query: 293 AHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344
                   +         V+ V  D      +  +       +IG+ T+   
Sbjct: 128 ------LEIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQH 173


>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase,
           SELD, ATP-binding, nucleotide-binding, selenium,
           transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
           (A:59-189)
          Length = 131

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 21/143 (14%)

Query: 37  RAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVN 96
                  IG    +  L+        LV ++D +   +           +G    A  ++
Sbjct: 3   AVMPRLGIGMDTCVIPLRHG---GLSLVQTTDYIYPIVDDP------YMMGRIACANVLS 53

Query: 97  DILTHGAEPLFFLDYLATS------QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPG 150
           D+   G      +  L         +        II+G      +AG ++ GG+T   P 
Sbjct: 54  DLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPW 113

Query: 151 LYHDRDYDLAGFAVGAVERKELL 173
           +       L G A    +  E +
Sbjct: 114 IV------LGGVATTVCQPNEFI 130


>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta
           fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
           vulgaris subsp} PDB: 2z1t_A* (A:159-343)
          Length = 185

 Score = 90.9 bits (225), Expect = 2e-19
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 26/185 (14%)

Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235
           +    GD IL   S G H       R+ ++                     + + +    
Sbjct: 2   DRARPGDAILISGSMGDHGLTILSQRQGLNF-----------------AADVCSDSASLN 44

Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAH 294
             + K++ + G I  L   T GGL   +   A  +     +   +V V + +        
Sbjct: 45  RVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRNGCSFLG 104

Query: 295 VKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGEVTQRSEKSPPILYQ 352
           + P  +         ++ I+  +  +  +   +E    E+   IG V    E        
Sbjct: 105 LDPLYLANEGK----LICILPEERAEAALAVLREGPHGEHAARIGSVKSVGEL--GAARA 158

Query: 353 GSLIL 357
           G +++
Sbjct: 159 GQVVM 163


>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE]
           hydrogenase maturation, ATPase, transferase; 1.55A
           {Thermococcus kodakarensis KOD1} (A:160-338)
          Length = 179

 Score = 81.6 bits (201), Expect = 1e-16
 Identities = 26/180 (14%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 180 AGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLL 239
            GD +L   + G H       R+ I+                +  ++ + P    V  + 
Sbjct: 4   VGDAVLVSGTIGDHGIALMSHREGIAFE--------------TELKSDVAPIWDVVKAVA 49

Query: 240 KILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKKAHVKPA 298
           + +     I A+   T  GL+  +       ++   +    + +   +   S+   + P 
Sbjct: 50  ETIGW-ENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPY 108

Query: 299 EVLRTFNCGIGMVIIVHPDNKDCIIKKFQ--ENNENIILIGEVTQRSEKSPPILYQGSLI 356
           +V         +V++V  +  +  ++  +  E   N  +IGEV         +L +  + 
Sbjct: 109 DVANEGK----VVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRG--KVLLETGIG 162


>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
           crystallography, structural genomics, BSGI; 2.00A
           {Escherichia coli O157} PDB: 2i6r_A (A:159-334)
          Length = 176

 Score = 80.5 bits (198), Expect = 3e-16
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 25/171 (14%)

Query: 177 NVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVS 236
            + AGD++L   + G H      +R+                 +  L   L++   +   
Sbjct: 3   TLTAGDILLVSGTLGDHGATILNLRE-----------------QLGLDGELVSDCAVLTP 45

Query: 237 PLLKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVEVPQIISWLSKKAHV 295
            +  +      +KAL   T GG+   +     A      I+ +++ V   +  + +   +
Sbjct: 46  LIQTLRDI-PGVKALRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGL 104

Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGEVTQRSE 344
                         +VI V  +  + ++     +   ++  LIGEV +R  
Sbjct: 105 DALNFANEGK----LVIAVERNAAEQVLAALHSHPLGKDAALIGEVVERKG 151


>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM
           synthetase, PURS, PURQ, formyl glycinamide, ligase; HET:
           CYG ADP; 1.90A {Salmonella typhimurium}
           (A:634-686,A:826-1022)
          Length = 250

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 18/106 (16%)

Query: 238 LLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAHVK 296
            ++ L    K+ A    + GGL   +   A   H    +++ ++                
Sbjct: 105 AMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGDD------------- 151

Query: 297 PAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN--ENIILIGEVT 340
               L  FN  +G VI V  +++D +     +    + +  +G+  
Sbjct: 152 HLAAL--FNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQAL 195


>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM
           synthetase, PURS, PURQ, formyl glycinamide, ligase; HET:
           CYG ADP; 1.90A {Salmonella typhimurium} (A:256-435)
          Length = 180

 Score = 29.1 bits (65), Expect = 0.87
 Identities = 14/82 (17%), Positives = 19/82 (23%), Gaps = 23/82 (28%)

Query: 91  VAMCVNDIL--THGAEPLFFLDYLATSQLN---------------------PDQATSIIK 127
               + D      GA+P   L   + S L                       D  T    
Sbjct: 65  SGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPL 124

Query: 128 GIAAGCCQAGCALIGGETAEMP 149
           G AA   + G   + G      
Sbjct: 125 GGAAFNNEFGRPALTGYFRTYE 146


>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
           (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
           bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
           2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
           (A:245-326,A:364-520)
          Length = 239

 Score = 27.6 bits (61), Expect = 2.9
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 223 LGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE-----NIPRAIP--AHLTASI 275
           + E  L   R++ S L     +T +   L +     L E      + R  P    L    
Sbjct: 42  VEEQNLKDLRVWTSQLKS-TIQTAEALRLPYEQWKALNEIDAQDLVQRLEPVIMELERQE 100

Query: 276 NLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNE 331
           N+  +    ++  L      K AE +    C +  V+ + P    C ++    N E
Sbjct: 101 NVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVE 156


>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246,
           structural genomics, JCSG, PSI, protein structure
           initiative; 2.15A {Thermotoga maritima}
           (A:63-178,A:360-388)
          Length = 145

 Score = 27.0 bits (60), Expect = 4.0
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 14/82 (17%)

Query: 95  VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154
           + D+L  GA P    D L  S++       II+GIA      G   +GGE          
Sbjct: 42  IRDVLAXGARPTAIFDSLHXSRI----IDGIIEGIADYGNSIGVPTVGGEL------RIS 91

Query: 155 RDYD----LAGFAVGAVERKEL 172
             Y     +   A G V    L
Sbjct: 92  SLYAHNPLVNVLAAGVVRNDXL 113


>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A
           {Leishmania donovani} PDB: 3h5z_A* (A:)
          Length = 421

 Score = 26.3 bits (58), Expect = 6.5
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 13/77 (16%)

Query: 266 AIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKK 325
            +P  L          +        K       E    ++    +  I    N  C+ K+
Sbjct: 128 GVPVTL---------RMGTPKYMKVKAQEKGQEEEAAKYDAPRHICEI----NFLCVHKQ 174

Query: 326 FQENNENIILIGEVTQR 342
            +E     ILI EVT+R
Sbjct: 175 LREKRLAPILIKEVTRR 191


>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
           membrane, transmembrane, transport, ATP- binding,
           hydrolase, nucleotide-binding, periplasm; HET: 1PE;
           2.60A {Escherichia coli} PDB: 1l7v_C* (C:)
          Length = 249

 Score = 26.2 bits (57), Expect = 6.8
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 9/146 (6%)

Query: 97  DILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRD 156
            +    A  L       + Q  P  AT +   +           +  + A    L     
Sbjct: 62  PLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG 121

Query: 157 YDLAGFAVGAVERKEL------LSPENVCAGD-LILGLPSSGLHSNGFALVRKIISLSQL 209
                 + G  +R  L      ++P+   AG  L+L  P + L     + + KI  LS L
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKI--LSAL 179

Query: 210 SWKDPSPISSEHSLGETLLTPTRIYV 235
           S +  + + S H L  TL    R ++
Sbjct: 180 SQQGLAIVXSSHDLNHTLRHAHRAWL 205


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,631,616
Number of extensions: 116800
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 32
Length of query: 357
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 268
Effective length of database: 1,947,404
Effective search space: 521904272
Effective search space used: 521904272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)