RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] (357 letters) >3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} Length = 350 Score = 361 bits (928), Expect = e-100 Identities = 135/346 (39%), Positives = 200/346 (57%), Gaps = 4/346 (1%) Query: 4 ERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKA--GFVDP 61 GL Y AGVNIEAGN+ V ++K VK T + +G FG L+ LK + DP Sbjct: 2 NAMAGLKYEDAGVNIEAGNQAVERMKQHVKKTFTQDVLTGLGSFGSLYSLKNIINNYDDP 61 Query: 62 ILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQ 121 +LV S DGVGTK K+A+ GK + +G DL + NDI+ GA+P+ FLDY+A +L+P Sbjct: 62 VLVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPITFLDYVAHDKLDPAI 121 Query: 122 ATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG 181 ++KG++ C + G +L+GGETAEMPG+Y + D+ G G V+RK +++ EN+ G Sbjct: 122 MEELVKGMSKACAECGVSLVGGETAEMPGVYQAGEIDMVGVITGIVDRKRIINGENIKEG 181 Query: 182 DLILGLPSSGLHSNGFALVRKIIS-LSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240 D++ GL SSGLH+NG++ RK+ ++ D P ++G+ LL P Y + + Sbjct: 182 DIVFGLSSSGLHTNGYSFARKLFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHD 241 Query: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300 L IK +AHITGGG ENIPR +P L A I+ +S P I + + + E+ Sbjct: 242 FLDNGVDIKGMAHITGGGFIENIPRVLPQGLGAQIDKDSFATPAIFKLMQRIGDISEFEM 301 Query: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQEN-NENIILIGEVTQRSEK 345 R+FN GIGM II D D + + +++ N + IG++T + Sbjct: 302 YRSFNMGIGMTIIASQDQFDKMQELAKKHTNTKLYQIGKITNSGKV 347 >3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A Length = 349 Score = 344 bits (882), Expect = 3e-95 Identities = 166/346 (47%), Positives = 223/346 (64%), Gaps = 5/346 (1%) Query: 4 ERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPIL 63 L+Y AGV+I+AGN V +IK AVK T+R +G +GGFG L +L + P+L Sbjct: 6 GNNPSLSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPT-KYKHPVL 64 Query: 64 VSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQAT 123 VS +DGVGTKL++A++ K+DTIGIDLVAMCVND++ GAEPLFFLDY AT +L+ D A Sbjct: 65 VSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTAA 124 Query: 124 SIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDL 183 +I GIA GC QAGCALIGGETAEMPG+Y DYD+AGF VG VE++E++ V GD Sbjct: 125 EVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDA 184 Query: 184 ILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILR 243 ++ + SSG HSNG++LVRKI+ +S+ + ++GE LL PT+IY+ LK L Sbjct: 185 LIAVGSSGPHSNGYSLVRKILEVSKADKNERLA---GKTIGEHLLAPTKIYIKSGLK-LI 240 Query: 244 KTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRT 303 I A++HITGGG ENIPR +P A I+ S E P I WL +K +V E+ RT Sbjct: 241 AEHDIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRT 300 Query: 304 FNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPI 349 FNCG+G++I + D + + Q E +IGE+ + + Sbjct: 301 FNCGVGLIIALPKDQANAAVALLQAEGETAWVIGEIAAANSNEAQV 346 >1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR synthetase, PURM, purine biosynthesis, trifunctional enzyme, PURL; 2.50A {Escherichia coli} SCOP: d.79.4.1 d.139.1.1 Length = 345 Score = 285 bits (730), Expect = 9e-78 Identities = 161/345 (46%), Positives = 228/345 (66%), Gaps = 4/345 (1%) Query: 6 KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65 K L+Y AGV+I+AGN V +IK VK T+R +G +GGFG L L + + +P+LVS Sbjct: 4 KTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQ-KYREPVLVS 62 Query: 66 SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125 +DGVGTKL++A++ ++DTIGIDLVAMCVND++ GAEPLFFLDY AT +L+ D A+++ Sbjct: 63 GTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAV 122 Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLIL 185 I GIA GC Q+GC+L+GGETAEMPG+YH DYD+AGF VG VE+ E++ V GD+++ Sbjct: 123 ISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDVLI 182 Query: 186 GLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKT 245 L SSG HSNG++LVRKI+ +S + L + LL PTRIYV +L+ L + Sbjct: 183 ALGSSGPHSNGYSLVRKILEVSGCDPQTTEL--DGKPLADHLLAPTRIYVKSVLE-LIEK 239 Query: 246 GKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFN 305 + A+AH+TGGG ENIPR +P + A I+ +S + P++ +WL +V+ E+ RTFN Sbjct: 240 VDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFN 299 Query: 306 CGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPIL 350 CG+GM+I + D + N EN IG + + ++ Sbjct: 300 CGVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSEQRVVI 344 >3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis} Length = 389 Score = 284 bits (727), Expect = 2e-77 Identities = 75/387 (19%), Positives = 137/387 (35%), Gaps = 67/387 (17%) Query: 10 TYGQAGVNI--EAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSS 67 Y GV+ E + + I + F + G + + + Sbjct: 6 RYNLRGVSASKEDVHNAIKNIDKGIFP----------KAFCKIIPDILGGDPEYCNIMHA 55 Query: 68 DGVGTKLKIAIETGKN-------DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120 DG GTK +A K I D + M ++D+L GA + + Sbjct: 56 DGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAVDNILVSS-TIGRNKLL 114 Query: 121 QATSIIKGIAAGCCQA---------GCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171 +I I G + GC GGETA++ L D ++R + Sbjct: 115 VPGEVISAIINGTDELLAELREMGVGCYATGGETADVGDLVRTIIVDSTVTCR--MKRSD 172 Query: 172 LLSPENVCAGDLILGLPSS-----------GLHSNGFALVRKIISLSQLSWKDPSPISSE 220 ++ +N+ GD+I+GL SS G+ SNG R + L+ K P + Sbjct: 173 VIDNKNIQGGDVIVGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAA 232 Query: 221 H---------------------SLGETLLTPTRIYVSPLLKILRK-TGKIKALAHITGGG 258 G+ +L+PTR Y + +L K +I + H +GG Sbjct: 233 VPKELVYSGGLKLTDKIEELGIDAGKMVLSPTRTYAPVIKVLLDKLRSQIHGMVHCSGGA 292 Query: 259 LTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDN 318 T+ + N +P + + +++ +E+ + FN G M I + P++ Sbjct: 293 QTKVMHFVENKR---VTKDNLFPIPPLFRTIQEQSGTDWSEMYKVFNMGHRMEIYIAPEH 349 Query: 319 KDCIIKKFQENNENIILIGEVTQRSEK 345 + +I + + ++G V + + Sbjct: 350 AEEVIGISKSFGIDAQIVGFVEEADKN 376 >2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} Length = 348 Score = 279 bits (714), Expect = 7e-76 Identities = 166/338 (49%), Positives = 222/338 (65%), Gaps = 1/338 (0%) Query: 6 KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65 Y QAGV+IEAG + V +K V+ T R +G IGGFGGLFDL G+ P+L+S Sbjct: 2 HMAKAYKQAGVDIEAGYQAVALMKEHVQKTMRPEVLGGIGGFGGLFDLSALGYRQPVLIS 61 Query: 66 SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125 +DGVGTKLK+A ++DTIGID VAMCVNDI+ GAEPLFFLDY+A + P++ +I Sbjct: 62 GTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAI 121 Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLIL 185 +KG+A GC +AGCALIGGETAEMPG+Y + +YDLAGFAVG E++ L++ E + AGD ++ Sbjct: 122 VKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALV 181 Query: 186 GLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKT 245 GLPSSGLHSNG++LVR+I+ D + LGE LL PTRIY L + + Sbjct: 182 GLPSSGLHSNGYSLVRRIVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRER- 240 Query: 246 GKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFN 305 IK +AHITGGGL ENIPR +P + A I L S + I +L +K ++ E+ FN Sbjct: 241 FTIKGMAHITGGGLIENIPRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFN 300 Query: 306 CGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 GIG+V+ V P+ +++ E E +IGEV + + Sbjct: 301 MGIGLVLAVSPETAAPLVEWLSERGEPAYIIGEVAKGA 338 >2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} Length = 334 Score = 273 bits (698), Expect = 5e-74 Identities = 161/315 (51%), Positives = 219/315 (69%), Gaps = 3/315 (0%) Query: 43 EIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHG 102 ++GGF GLFDLK AGF DP+L S +DGVGTKLKIA K+DTIG DLVAMCVNDIL G Sbjct: 9 DLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQG 68 Query: 103 AEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162 AEPLFFLDY + +L+ +++ GIA C +AGCAL+GGETAEMP +Y +YDLAGF Sbjct: 69 AEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGF 128 Query: 163 AVGAVERKEL-LSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEH 221 AVGA+ER + E + GD+++G+ SSGLHSNGF+LVRKI++ S L + P+P Sbjct: 129 AVGAMERDQKLPHLERITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGD 188 Query: 222 -SLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSV 280 +LG+ LLTPTRIY LL +L ++G +KA AHITGGGL ENIPR +P L ++ + Sbjct: 189 QTLGDLLLTPTRIYSHSLLPVL-RSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTW 247 Query: 281 EVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVT 340 +P++ SWL ++ H+ E+ RTFNCG+G V++V + + I++ Q++ E +IG V Sbjct: 248 RIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVV 307 Query: 341 QRSEKSPPILYQGSL 355 R+E SP + + + Sbjct: 308 ARAEGSPRVKVKNLI 322 >2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} Length = 346 Score = 271 bits (693), Expect = 2e-73 Identities = 163/348 (46%), Positives = 224/348 (64%), Gaps = 5/348 (1%) Query: 10 TYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDG 69 Y QAGV+IEAG V+++K V++T R +G +GGFGG+FDL K +P+LVS +DG Sbjct: 4 AYKQAGVDIEAGYEAVSRMKKHVQTTMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTDG 63 Query: 70 VGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGI 129 VGTKL +A K+DTIGID VAMCVNDI+ GAEPLFFLDY+A + P + +I+KGI Sbjct: 64 VGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGI 123 Query: 130 AAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPS 189 + GC QAGCALIGGETAEMPG+Y +YDLAGF VG V++K++++ E + AG +++GL S Sbjct: 124 SEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLAS 183 Query: 190 SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIK 249 SG+HSNG++LVRK++ D E LGE LL PT+IYV P + L K ++ Sbjct: 184 SGIHSNGYSLVRKVLLEDGELSLDRIYGRLELPLGEELLKPTKIYVKP-ILELLKNHEVY 242 Query: 250 ALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIG 309 +AHITGGG ENIPR +P + A I L S ++ I S L + ++ E+ FN GIG Sbjct: 243 GMAHITGGGFIENIPRMLPEGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIG 302 Query: 310 MVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357 MV+ V ++ I++ +E E +IG + + + G L Sbjct: 303 MVVAVKEEDAKDIVRLLEEQGETARIIGRTV----QGAGVTFNGGKAL 346 >3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 394 Score = 259 bits (662), Expect = 9e-70 Identities = 80/385 (20%), Positives = 137/385 (35%), Gaps = 62/385 (16%) Query: 10 TYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDG 69 Y Q GV+ + + IKS K F + G + + +DG Sbjct: 7 RYMQRGVSSQKEDV-HKAIKSIDKGIYP-------RAFCKIIPDILGGDPEYCNIMHADG 58 Query: 70 VGTKLKIAIETGKN-------DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQA 122 GTK +A K I D V M ++D++ GA L Sbjct: 59 AGTKSSLAYVYWKETGDISVWKGIAQDAVIMNIDDLICVGAVDNILLSSTIGR-NKNLIP 117 Query: 123 TSIIKGIAAGCCQA---------GCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELL 173 ++ I G + G GGETA++ L D + ++ Sbjct: 118 GEVLAAIINGTEEVLQMLRDNGIGIYSTGGETADVGDLVRTIIVDSTVTCRMKRQD--VI 175 Query: 174 SPENVCAGDLILGLPS-----------SGLHSNGFALVRKIISLSQLSWKDPSP------ 216 S EN+ AG++I+G S G+ SNG R + + L+ K P Sbjct: 176 SNENIKAGNVIVGFASYGQTSYETEYNGGMGSNGLTSARHDVFNNVLASKYPESFDPKVP 235 Query: 217 ---------------ISSEHSLGETLLTPTRIYVSPLLKILRK-TGKIKALAHITGGGLT 260 ++ G+ +L+PTR Y + +I+ + GK+ + H +GGG T Sbjct: 236 ENLVYSGEMNLTDPYLNVPLDAGKLVLSPTRTYAPLMKEIIHQYKGKLDGVVHCSGGGQT 295 Query: 261 ENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKD 320 + + T I N +VP + + +++ E+ + FN G + I + + Sbjct: 296 KVLHF--TDATTHIIKDNLFDVPPLFQLIQGQSNTPWEEMYKVFNMGHRLEIYTDAAHAE 353 Query: 321 CIIKKFQENNENIILIGEVTQRSEK 345 +I ++ N +IG V Sbjct: 354 GMIAIAKKFNIEAKIIGRVEAPVAG 378 >2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A Length = 334 Score = 114 bits (286), Expect = 3e-26 Identities = 56/304 (18%), Positives = 107/304 (35%), Gaps = 31/304 (10%) Query: 44 IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103 DL + L S+D I IG + ND+ GA Sbjct: 32 EQEDQARLDLAQLVAEGDRLAFSTDSYV----IDPLFFPGGNIGKLAICGTANDVAVSGA 87 Query: 104 EPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162 P + + L + +++ +A AG A++ G+T + + Sbjct: 88 IPRYLSCGFILEEGLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQR-GAADKLFINTA 146 Query: 163 AVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHS 222 +GA+ + + AGD++L + G H +R+ + L D Sbjct: 147 GMGAIPTNIHWGAQTLTAGDILLVSGTLGDHGATILNLREQLGLDGELVSDC-------- 198 Query: 223 LGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVE 281 ++PL++ LR +KAL T GG+ + A I+ +++ Sbjct: 199 ----------AVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGIEISESALP 248 Query: 282 VPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGEV 339 V + + + + + L N G +VI V + + ++ + ++ LIGEV Sbjct: 249 VKPAVRGVCELLGL---DALNFANEG-KLVIAVERNAAEQVLAALHSHPLGKDAALIGEV 304 Query: 340 TQRS 343 +R Sbjct: 305 VERK 308 >2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* Length = 343 Score = 104 bits (259), Expect = 4e-23 Identities = 57/308 (18%), Positives = 103/308 (33%), Gaps = 37/308 (12%) Query: 52 DLKKAGFVDPILVSSSDG--VGTKLKIAIET---------GKNDTIGIDLVAMCVNDILT 100 DL F +PIL + +D + +A+ T IG V VND+ Sbjct: 25 DLFLRHFDNPILGTLNDAARLDLTGPLAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSM 84 Query: 101 HGAEPLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDL 159 GA P + L+ D ++ + +AG ++ G+T +P + Sbjct: 85 LGARPRYLSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPR-GACDKMFI 143 Query: 160 AGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISS 219 +G + S + GD IL S G H R+ + Sbjct: 144 NTTGIGEILVDPAPSGDRARPGDAILISGSMGDHGLTILSQRQGL--------------- 188 Query: 220 EHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLN 278 + + + + + K++ + G I L T GGL + A + + Sbjct: 189 --NFAADVCSDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLET 246 Query: 279 SVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILI 336 +V V + + + P L N G ++ I+ + + + +E E+ I Sbjct: 247 AVPVRESVRNGCSFLGLDP---LYLANEG-KLICILPEERAEAALAVLREGPHGEHAARI 302 Query: 337 GEVTQRSE 344 G V E Sbjct: 303 GSVKSVGE 310 >2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A Length = 338 Score = 86.2 bits (212), Expect = 9e-18 Identities = 52/332 (15%), Positives = 107/332 (32%), Gaps = 39/332 (11%) Query: 28 IKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIG 87 I + G + G D +V + DG K IG Sbjct: 24 ILKTLTLKSAGGIGLDALDDGATIPFG-----DKHIVFTIDGHTVKPLFF----PGGDIG 74 Query: 88 IDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATS-IIKGIAAGCCQAGCALIGGETA 146 V+ VND+ GAEP+ + + + + ++K + + ++ G+T Sbjct: 75 RLAVSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTK 134 Query: 147 EMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISL 206 + ++ G + +S GD +L + G H R+ I+ Sbjct: 135 VVE-----DKIEMFVITAGIGIAEHPVSDAGAKVGDAVLVSGTIGDHGIALMSHREGIAF 189 Query: 207 SQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPR- 265 D +P V + I A+ T GL+ + Sbjct: 190 ETELKSDVAP---------------IWDVVKAVAETIGWENIHAMKDPTRAGLSNALNEI 234 Query: 266 AIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKK 325 A +++ + + + + S+ + P N G +V++V + + ++ Sbjct: 235 ARKSNVGILVREADIPIRPEVRAASEMLGISP---YDVANEG-KVVMVVAREYAEEALEA 290 Query: 326 FQ--ENNENIILIGEVTQRSEKSPPILYQGSL 355 + E N +IGEV ++ +L + + Sbjct: 291 MRKTEKGRNAAIIGEVI--ADYRGKVLLETGI 320 >3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* Length = 394 Score = 86.2 bits (212), Expect = 1e-17 Identities = 39/267 (14%), Positives = 77/267 (28%), Gaps = 19/267 (7%) Query: 91 VAMCVNDILTHGAEPL------FFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGE 144 A ++D+ G + T + II+G +AG ++ GG+ Sbjct: 106 CANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQ 165 Query: 145 TAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKII 204 T P + L G A + E + P+N GD+++ G I Sbjct: 166 TVLNPWIV------LGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDI 219 Query: 205 SLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIP 264 K + + ++ A G L Sbjct: 220 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQN 279 Query: 265 RAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTF--NCGIGMVIIVHPDNKDCI 322 A S ++++ V ++ +SK + T G G++I + + Sbjct: 280 LAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSG-GLLICLPREQAARF 338 Query: 323 IKKFQEN----NENIILIGEVTQRSEK 345 + + +IG V + + Sbjct: 339 CAEIKSPKYGEGHQAWIIGIVEKGNRT 365 >3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus} Length = 319 Score = 76.5 bits (187), Expect = 1e-14 Identities = 40/261 (15%), Positives = 89/261 (34%), Gaps = 22/261 (8%) Query: 84 DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGG 143 IG +A+ ++D+ GA+P + +A + + D + G A Q ALIGG Sbjct: 59 WLIGWKSLAVNISDMAAMGAQPRWATLTIALPEADEDWISKFAAGFFACAAQFDIALIGG 118 Query: 144 ETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKI 203 +T P ++ +G L A D I G + A ++ Sbjct: 119 DTTRGP-------LTISVQIMGETPPGASLLRSTARADDDIWVSGPLGDAALALAAIQGR 171 Query: 204 ISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI 263 LS + ++ G + I+ G L + Sbjct: 172 YPLSDTELAACGKALHQPQP-------------RVVLGQALRGLAHSALDISDGLLADLG 218 Query: 264 PRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCII 323 + + A + L ++ +++S S++ ++ + + + ++ I Sbjct: 219 HILEHSQVGAEVWLKAIPKSEVVSAHSQEVAIQKM--ILSGGDDYELCFTASTQHRQQIA 276 Query: 324 KKFQENNENIILIGEVTQRSE 344 ++ + ++ +IG +T + Sbjct: 277 DIGRQLSLDMAVIGRITDTQQ 297 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 61.1 bits (148), Expect = 3e-10 Identities = 62/363 (17%), Positives = 109/363 (30%), Gaps = 151/363 (41%) Query: 4 ERKRGL-TYGQAGVNIEAGNRTVTQI------KSAVKSTKRAGTIGEIGGFGG------- 49 + K + Y A R + ++ + + I FGG Sbjct: 118 KTKELIKNYITA---RIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTDDY 169 Query: 50 ------LFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103 L+ V ++ S++ + ++ ++ K T G++++ L Sbjct: 170 FEELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-----L-ENP 222 Query: 104 EPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFA 163 DYL + S C LI G+ LA + Sbjct: 223 SNTPDKDYLLSI------PIS-------------CPLI--------GV-----IQLAHYV 250 Query: 164 VGAVERKEL-LSPENVCAGDL---ILGLPSSGLHSNG----------------FALVRKI 203 V A K L +P G+L + G ++G HS G F VRK Sbjct: 251 VTA---KLLGFTP-----GELRSYLKG--ATG-HSQGLVTAVAIAETDSWESFFVSVRKA 299 Query: 204 ISL-------SQLSWK----DPSPI--SSEHSLGETLLTPTRIYVSPLLKI--LRKTGKI 248 I++ ++ PS + S E+ E P SP+L I L + Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLEN--NEG--VP-----SPMLSISNLTQ---- 346 Query: 249 KAL-AHI--TGGGLTENIPRAIPAHLTASINL-NSVEVPQ--IISWLSKKAHVKPAEVLR 302 + + ++ T L + I+L N + ++S P + L Sbjct: 347 EQVQDYVNKTNSHLPAG------KQV--EISLVNG---AKNLVVS--------GPPQSLY 387 Query: 303 TFN 305 N Sbjct: 388 GLN 390 Score = 34.1 bits (78), Expect = 0.044 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 49/163 (30%) Query: 216 PISSEH-SLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTAS 274 P++ H SL LL PT + + L++ K L T G + PA L Sbjct: 8 PLTLSHGSLEHVLLVPTASF--FIASQLQEQ-FNKILPEPT-EGFAADDEPTTPAELVGK 63 Query: 275 INLNSVEVPQIISWLSKKAHVKPA----EVL--------RTFNCGIGMVIIVH------- 315 + ++S +VL + G +H Sbjct: 64 ----------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND----IHALAAKLL 109 Query: 316 PDNKDCIIKKFQENNENIILI----GEVTQR--SEKSPPILYQ 352 +N ++K +I + +R +KS L++ Sbjct: 110 QENDTTLVKTK-----ELIKNYITARIMAKRPFDKKSNSALFR 147 >2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus HB8} Length = 311 Score = 51.6 bits (122), Expect = 3e-07 Identities = 42/319 (13%), Positives = 85/319 (26%), Gaps = 39/319 (12%) Query: 28 IKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIG 87 + G G + L+ + + ++ + +G Sbjct: 12 LARLAPLGYPPEAPLPPGDDAGGVWAEG----RAWLLKTDGFLYREVALKGMGPFE--VG 65 Query: 88 IDLVAMCVNDILTHGAEPLFFLD-YLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETA 146 VA +D+L PL F L +++G A + G L+GG+T Sbjct: 66 FRGVAATASDLLAKMGRPLGFTLGLFLPEDLEEGFVLELVRGAAEAAKRLGAFLLGGDTN 125 Query: 147 EMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISL 206 + G + L + + L L G + SL Sbjct: 126 RGVEVAL--------TVSGYALAEAPLPRKALPGDLLYLAGDRWGRTGAAIRAHYEGRSL 177 Query: 207 SQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA 266 E P P L++L +G + + + GL E + + Sbjct: 178 EGFPKIR-----------EAAFYPL-----PRLELLALSG-LLRGSLDSSDGLAETLWQL 220 Query: 267 IPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG--IGMVIIVHPDNKDCIIK 324 + + + + A + A + G V++V + + Sbjct: 221 ADLGVGVEVEA-----LPLYPDVLAFAGSEEAALELVLYGGEEFEAVLVVPQEGAAAVEA 275 Query: 325 KFQENNENIILIGEVTQRS 343 + + + G V Sbjct: 276 RAKAKGLPLFRAGRVVAGE 294 >1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A* Length = 615 Score = 49.8 bits (118), Expect = 9e-07 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%) Query: 95 VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154 + D+L GA P D L S++ II+GIA G +GGE + LY Sbjct: 104 IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGEL-RISSLYAH 158 Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGDLI-LGLPSSGLHSNGFALVRKIISLSQLSWKD 213 A G V L+ + G +I + ++G A + L+ Sbjct: 159 NPLVNVL-AAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASF----ASEDLTGDK 213 Query: 214 PSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTA 273 + +S + + + + G ++ + GG+ + Sbjct: 214 ATKLSIQVGDPFAEKMLIEAF-----LEMVEEGLVEGAQDLGAGGVLSATSELVAK---- 264 Query: 274 SINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENI 333 ++ + + + + M ++ P I++ +++ Sbjct: 265 ----GNLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSPQKASRILEIARKHLLFG 320 Query: 334 ILIGEV 339 ++ EV Sbjct: 321 DVVAEV 326 >2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A Length = 345 Score = 47.7 bits (112), Expect = 4e-06 Identities = 30/266 (11%), Positives = 75/266 (28%), Gaps = 22/266 (8%) Query: 91 VAMCVNDILTHGAEPLFFLDYLATSQ--LNPDQATSIIKGIAAGCCQAGCALIGGETAEM 148 A ++D+ G P+ L + L+ + +I+G +A L+GG T + Sbjct: 86 TANALSDVYAMGGIPVNALAISCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDD 145 Query: 149 PGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQ 208 G + ++ G L++ L++ + Sbjct: 146 KEPKFGL------SVAGICPEGKYITQSGAQVGQLLI----LTKPIGTGILIKGLKEGIL 195 Query: 209 LSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGL------TEN 262 I + +L + + + G + +I E Sbjct: 196 KEEDINEAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEK 255 Query: 263 IPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI----GMVIIVHPDN 318 +P + + + ++++ G++ ++ + Sbjct: 256 VPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEK 315 Query: 319 KDCIIKKFQENNENIILIGEVTQRSE 344 + I + +E N +IGE + Sbjct: 316 LEKIDETAKELEVNYWIIGETIAENV 341 >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Score = 29.7 bits (66), Expect = 1.0 Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 14 AGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILV 64 +GV N ++++ + + + + + D+ +AG +D L Sbjct: 440 SGVK---ANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLG 487 >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleotide and nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 Score = 28.2 bits (62), Expect = 3.3 Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 1/74 (1%) Query: 61 PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120 P++ ++ + +IA +N+ I I L + + D Sbjct: 48 PVVPANMQTIID-ERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGLIASISVGVKED 106 Query: 121 QATSIIKGIAAGCC 134 + + + A Sbjct: 107 EYEFVQQLAAEHLT 120 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.9 bits (61), Expect = 4.1 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 29/137 (21%) Query: 236 SPLLKILRK--TGKIK--ALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSK 291 +P++ + +K TG K A A + G L IP N N+ V +I+ Sbjct: 1371 NPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPG------NRNADNVDKILEQFEY 1424 Query: 292 KAHVKPAEVLRT----------FNCGI--GMVIIVHPDNKDCIIKKFQENNENIILIGEV 339 + P++ L+T F G G I+VHPD I + + N + +V Sbjct: 1425 VLY--PSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYNE----YVAKV 1478 Query: 340 TQRSEKSPPILYQGSLI 356 + R EKS + +I Sbjct: 1479 SAR-EKSAYKFFHNGMI 1494 >1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A {Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB: 1iyl_A* 1nmt_A Length = 392 Score = 26.7 bits (59), Expect = 8.8 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Query: 296 KPAEV-LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343 P L N I V I N CI KK + +LI E+T+R Sbjct: 97 TPVTFKLNKSNKVIDSVEI----NFLCIHKKLRNKRLAPVLIKEITRRV 141 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,023,737 Number of extensions: 140464 Number of successful extensions: 407 Number of sequences better than 10.0: 1 Number of HSP's gapped: 374 Number of HSP's successfully gapped: 24 Length of query: 357 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 264 Effective length of database: 3,438,538 Effective search space: 907774032 Effective search space used: 907774032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.2 bits)