RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole
synthetase [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)



>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase
           (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 166

 Score =  188 bits (479), Expect = 6e-49
 Identities = 96/165 (58%), Positives = 129/165 (78%), Gaps = 1/165 (0%)

Query: 9   LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68
           L+Y  AGV+I+AGN  V +IK  VK T+R   +G +GGFG L  L +  + +P+LVS +D
Sbjct: 3   LSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQ-KYREPVLVSGTD 61

Query: 69  GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
           GVGTKL++A++  ++DTIGIDLVAMCVND++  GAEPLFFLDY AT +L+ D A+++I G
Sbjct: 62  GVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISG 121

Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELL 173
           IA GC Q+GC+L+GGETAEMPG+YH  DYD+AGF VG VE+ E++
Sbjct: 122 IAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEII 166


>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide
           synthetase (PurM) C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 175

 Score =  139 bits (352), Expect = 3e-34
 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 3/175 (1%)

Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235
             V  GD+++ L SSG HSNG++LVRKI+ +S    +          L + LL PTRIYV
Sbjct: 3   SKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTEL--DGKPLADHLLAPTRIYV 60

Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295
             +   L +   + A+AH+TGGG  ENIPR +P +  A I+ +S + P++ +WL    +V
Sbjct: 61  KSV-LELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNV 119

Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPIL 350
           +  E+ RTFNCG+GM+I +     D  +     N EN   IG +     +   ++
Sbjct: 120 EHHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSEQRVVI 174


>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation
           protein HypE {Thermococcus kodakaraensis [TaxId:
           311400]}
          Length = 113

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 60  DPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LN 118
           D  +V + DG   K            IG   V+  VND+   GAEP+   + +   + L+
Sbjct: 9   DKHIVFTIDGHTVK----PLFFPGGDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLD 64

Query: 119 PDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVER 169
            +    ++K +     +    ++ G+T  +       +  +    +G  E 
Sbjct: 65  MEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKI---EMFVITAGIGIAEH 112


>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL)
           N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 137

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 44  IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103
           IG      +          L+ ++D +   +         + +G   +++ V+D++ +G 
Sbjct: 24  IGDDTAPVEYC-----SKKLLLTTDVLNEGVHFLRSY-IPEAVGWKAISVNVSDVIANGG 77

Query: 104 EPL-FFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162
            P    +       L          G+   C    C ++GG  ++   +       ++ F
Sbjct: 78  LPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSEKIG------ISVF 131

Query: 163 AVGAVE 168
            VG  E
Sbjct: 132 LVGETE 137


>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 152

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 8/83 (9%)

Query: 91  VAMCVNDILTHGAEPLFFLDY--LATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEM 148
            A  ++D+   G  P+  L        +L+ +    +I+G      +A   L+GG T + 
Sbjct: 75  TANALSDVYAMGGIPVNALAISCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDD 134

Query: 149 PGLYHDRDYDLAGFAVGAVERKE 171
                           G     +
Sbjct: 135 KEPK------FGLSVAGICPEGK 151


>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation
           protein HypE {Thermococcus kodakaraensis [TaxId:
           311400]}
          Length = 179

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 180 AGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLL 239
            GD +L   + G H       R+ I+       D +PI     + + +            
Sbjct: 8   VGDAVLVSGTIGDHGIALMSHREGIAFETELKSDVAPI---WDVVKAVAE---------- 54

Query: 240 KILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAHVKPA 298
                   I A+   T  GL+  +   A  +++   +    + +   +   S+   + P 
Sbjct: 55  --TIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPY 112

Query: 299 EVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIIL--IGEVTQRSEK 345
           +V         +V++V  +  +  ++  ++  +      IGEV      
Sbjct: 113 DVA----NEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRG 157


>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 182

 Score = 28.8 bits (63), Expect = 0.72
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 310 MVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344
           ++  ++ +  + I +  +E   N  +IGE    + 
Sbjct: 144 LLFTINKEKLEKIDETAKELEVNYWIIGETIAENV 178


>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 141

 Score = 25.9 bits (57), Expect = 4.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342
            PA +   ++    MV I    N  C+ KK +      +LI E+T+R
Sbjct: 75  IPANI-HIYDTEKKMVEI----NFLCVHKKLRSKRVAPVLIREITRR 116


>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast
           (Candida albicans) [TaxId: 5476]}
          Length = 165

 Score = 25.5 bits (56), Expect = 7.7
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 296 KPAEV-LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342
            P    L   N  I  V I    N  CI KK +      +LI E+T+R
Sbjct: 97  TPVTFKLNKSNKVIDSVEI----NFLCIHKKLRNKRLAPVLIKEITRR 140


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 25.0 bits (54), Expect = 8.7
 Identities = 5/31 (16%), Positives = 14/31 (45%)

Query: 283 PQIISWLSKKAHVKPAEVLRTFNCGIGMVII 313
           P  +S + ++  +K  +       G+G  ++
Sbjct: 202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVV 232


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,304,600
Number of extensions: 61022
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 15
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)