RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] (357 letters) >d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Score = 188 bits (479), Expect = 6e-49 Identities = 96/165 (58%), Positives = 129/165 (78%), Gaps = 1/165 (0%) Query: 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68 L+Y AGV+I+AGN V +IK VK T+R +G +GGFG L L + + +P+LVS +D Sbjct: 3 LSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQ-KYREPVLVSGTD 61 Query: 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128 GVGTKL++A++ ++DTIGIDLVAMCVND++ GAEPLFFLDY AT +L+ D A+++I G Sbjct: 62 GVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISG 121 Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELL 173 IA GC Q+GC+L+GGETAEMPG+YH DYD+AGF VG VE+ E++ Sbjct: 122 IAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEII 166 >d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Score = 139 bits (352), Expect = 3e-34 Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 3/175 (1%) Query: 176 ENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYV 235 V GD+++ L SSG HSNG++LVRKI+ +S + L + LL PTRIYV Sbjct: 3 SKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTEL--DGKPLADHLLAPTRIYV 60 Query: 236 SPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHV 295 + L + + A+AH+TGGG ENIPR +P + A I+ +S + P++ +WL +V Sbjct: 61 KSV-LELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNV 119 Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPIL 350 + E+ RTFNCG+GM+I + D + N EN IG + + ++ Sbjct: 120 EHHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSEQRVVI 174 >d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Length = 113 Score = 67.7 bits (165), Expect = 1e-12 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%) Query: 60 DPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQ-LN 118 D +V + DG K IG V+ VND+ GAEP+ + + + L+ Sbjct: 9 DKHIVFTIDGHTVK----PLFFPGGDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLD 64 Query: 119 PDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVER 169 + ++K + + ++ G+T + + + +G E Sbjct: 65 MEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKI---EMFVITAGIGIAEH 112 >d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL) N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 Score = 48.2 bits (114), Expect = 1e-06 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 13/126 (10%) Query: 44 IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103 IG + L+ ++D + + + +G +++ V+D++ +G Sbjct: 24 IGDDTAPVEYC-----SKKLLLTTDVLNEGVHFLRSY-IPEAVGWKAISVNVSDVIANGG 77 Query: 104 EPL-FFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162 P + L G+ C C ++GG ++ + ++ F Sbjct: 78 LPKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSEKIG------ISVF 131 Query: 163 AVGAVE 168 VG E Sbjct: 132 LVGETE 137 >d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Length = 152 Score = 45.1 bits (106), Expect = 8e-06 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 8/83 (9%) Query: 91 VAMCVNDILTHGAEPLFFLDY--LATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEM 148 A ++D+ G P+ L +L+ + +I+G +A L+GG T + Sbjct: 75 TANALSDVYAMGGIPVNALAISCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDD 134 Query: 149 PGLYHDRDYDLAGFAVGAVERKE 171 G + Sbjct: 135 KEPK------FGLSVAGICPEGK 151 >d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Length = 179 Score = 44.5 bits (104), Expect = 1e-05 Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 22/169 (13%) Query: 180 AGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLL 239 GD +L + G H R+ I+ D +PI + + + Sbjct: 8 VGDAVLVSGTIGDHGIALMSHREGIAFETELKSDVAPI---WDVVKAVAE---------- 54 Query: 240 KILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAHVKPA 298 I A+ T GL+ + A +++ + + + + S+ + P Sbjct: 55 --TIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPY 112 Query: 299 EVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIIL--IGEVTQRSEK 345 +V +V++V + + ++ ++ + IGEV Sbjct: 113 DVA----NEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRG 157 >d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Length = 182 Score = 28.8 bits (63), Expect = 0.72 Identities = 6/35 (17%), Positives = 16/35 (45%) Query: 310 MVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSE 344 ++ ++ + + I + +E N +IGE + Sbjct: 144 LLFTINKEKLEKIDETAKELEVNYWIIGETIAENV 178 >d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Score = 25.9 bits (57), Expect = 4.8 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 296 KPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342 PA + ++ MV I N C+ KK + +LI E+T+R Sbjct: 75 IPANI-HIYDTEKKMVEI----NFLCVHKKLRSKRVAPVLIREITRR 116 >d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]} Length = 165 Score = 25.5 bits (56), Expect = 7.7 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 296 KPAEV-LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342 P L N I V I N CI KK + +LI E+T+R Sbjct: 97 TPVTFKLNKSNKVIDSVEI----NFLCIHKKLRNKRLAPVLIKEITRR 140 >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 Score = 25.0 bits (54), Expect = 8.7 Identities = 5/31 (16%), Positives = 14/31 (45%) Query: 283 PQIISWLSKKAHVKPAEVLRTFNCGIGMVII 313 P +S + ++ +K + G+G ++ Sbjct: 202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVV 232 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,304,600 Number of extensions: 61022 Number of successful extensions: 139 Number of sequences better than 10.0: 1 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 15 Length of query: 357 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 271 Effective length of database: 1,226,816 Effective search space: 332467136 Effective search space used: 332467136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.7 bits)