BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole
synthetase [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60
           MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD
Sbjct: 1   MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60

Query: 61  PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120
           PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD
Sbjct: 61  PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120

Query: 121 QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180
           QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA
Sbjct: 121 QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180

Query: 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240
           GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK
Sbjct: 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240

Query: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300
           ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV
Sbjct: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300

Query: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357
           LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL
Sbjct: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357


>gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 290

 Score = 30.4 bits (67), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 19/140 (13%)

Query: 81  GKNDTIGIDLVAMCVNDI------------LTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
           G N  I   L +MCV D+            L       FFL +     +NP   T++ K 
Sbjct: 7   GNNGQIAQSLSSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTAVDKA 66

Query: 129 -----IAAGCCQAGCALI--GGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG 181
                IA      G   I    ++  +P +Y   DY   G +   ++     +P N+   
Sbjct: 67  EDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGK 126

Query: 182 DLILGLPSSGLHSNGFALVR 201
             + G      ++N + ++R
Sbjct: 127 SKLAGEEKVASYTNNYVILR 146


>gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 170

 Score = 26.9 bits (58), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 256 GGGLTENIPRAIPAHLTASINLNSVEVPQIISWL 289
           G  L++ +PRAI    T+   L +  + Q++SWL
Sbjct: 43  GHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWL 76


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)

Query: 1   MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIG-EIGGFGGLFDLKKAGFV 59
           + HE K   +  +  VNI A        K A++S      IG  + GF    DL K+GFV
Sbjct: 868 LEHEEKIQSSIEKIFVNIPA--------KMAIES------IGIHLTGFADRIDLLKSGFV 913

Query: 60  D 60
           D
Sbjct: 914 D 914


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 24.6 bits (52), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 91  VAMCVNDILTHGAEPLFFLDYLATSQLNPD------QATSIIKGIAAGCCQAGCALIGGE 144
           VA C  +I+  GA+PL   D L     NP+      Q    +KGI   C      ++ G 
Sbjct: 473 VAECWRNIIATGAKPLAITDNLNFG--NPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530

Query: 145 TA---EMPGLYHDRDYDLAGFAVGAVERKELLSP-ENVCAGDLILGLPSSGLH 193
            +   E  G        +AG  VG +    L++  ++   GDLIL + + G H
Sbjct: 531 VSFYNETNGQSIFPTPTIAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 24.6 bits (52), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 175 PENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGE--TLLTPTR 232
           PEN      IL +  +   S+  + V++I   S LS     P S+  S  +   L TP+ 
Sbjct: 114 PEN------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167

Query: 233 IYVSPLLKILRKTGKIKALAHITGGGLTEN 262
           IY++  L  L   G        +  GL ++
Sbjct: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH 197


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 24.3 bits (51), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 25/120 (20%)

Query: 224 GETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI------------PRAIPAHL 271
           G  +L+  RI+ S + K+L     + A+ H+  GG+ + I             + I A  
Sbjct: 196 GLKILSSERIW-SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254

Query: 272 TASINLNS-VEVPQIISWLSKKAHVKPAE-----------VLRTFNCGIGMVIIVHPDNK 319
                ++S +    +ISW  KK+ +  A+           ++  FNC      +  P+ K
Sbjct: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 22.7 bits (47), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 302 RTFNCGIGMVIIVHPDNKDCIIKKF 326
           R   CG    II+HP N  C + +F
Sbjct: 247 RIIQCGTPQEIILHPAN--CYVSEF 269


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 22.7 bits (47), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 14/48 (29%)

Query: 257 GGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTF 304
            G+  N+ + I   L +S+NL              + H+KP + L TF
Sbjct: 397 NGMNSNLVKLIMRTLASSVNL--------------QEHLKPTDFLETF 430


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.137    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,639
Number of Sequences: 1233
Number of extensions: 9585
Number of successful extensions: 32
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 11
length of query: 357
length of database: 328,796
effective HSP length: 75
effective length of query: 282
effective length of database: 236,321
effective search space: 66642522
effective search space used: 66642522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)