HHsearch alignment for GI: 254780570 and conserved domain: COG0482

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=95.34  E-value=0.13  Score=31.78  Aligned_cols=91  Identities=19%  Similarity=0.350  Sum_probs=57.1

Q ss_pred             CCCCEEEEEECCC-CHHHHH-HHHHHHCCCCCCEEEEEEEC-CC-------CC-----HHHHHHHHCCCCEEEEECCC-C
Q ss_conf             9866599997698-501899-99999739998479999976-88-------88-----78889986089504630132-3
Q gi|254780570|r    1 MIRKNIVIFISGE-GTNMLS-LIQATKKNDYPAEIVGVFSD-NS-------NA-----QGLVKARKEKVPTFPIPYKD-Y   64 (205)
Q Consensus         1 M~k~riavl~SG~-Gsnl~~-Il~~~~~~~~~~eI~~Visn-~~-------da-----~~l~~a~~~~Ip~~~i~~~~-~   64 (205)
T Consensus         1 ~~~~kV~v~mSGGVDSSVaA~lLk~--Q---GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y   75 (356)
T COG0482           1 MKKKKVLVGMSGGVDSSVAAYLLKE--Q---GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEF   75 (356)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH--C---CCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHH
T ss_conf             9876799990577789999999997--6---9749999999641478886772567899999999809955998468998


Q ss_pred             -----------------------CCCCCHHHHHHHHCCCCCCEEEEEEEEEEECC
Q ss_conf             -----------------------32210124321000123430364311222057
Q gi|254780570|r   65 -----------------------ISRREHEKAILMQLSSIQPDLICLAGYMRLLS   96 (205)
Q Consensus        65 -----------------------~~~~~~~~~l~~~l~~~~~Dliv~~g~~~il~   96 (205)
T Consensus        76 ~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~  130 (356)
T COG0482          76 WNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRE  130 (356)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEC
T ss_conf             8888887789985799999651048788999999999975998578744676543