HHsearch alignment for GI: 254780570 and conserved domain: COG0482
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=95.34 E-value=0.13 Score=31.78 Aligned_cols=91 Identities=19% Similarity=0.350 Sum_probs=57.1
Q ss_pred CCCCEEEEEECCC-CHHHHH-HHHHHHCCCCCCEEEEEEEC-CC-------CC-----HHHHHHHHCCCCEEEEECCC-C
Q ss_conf 9866599997698-501899-99999739998479999976-88-------88-----78889986089504630132-3
Q gi|254780570|r 1 MIRKNIVIFISGE-GTNMLS-LIQATKKNDYPAEIVGVFSD-NS-------NA-----QGLVKARKEKVPTFPIPYKD-Y 64 (205)
Q Consensus 1 M~k~riavl~SG~-Gsnl~~-Il~~~~~~~~~~eI~~Visn-~~-------da-----~~l~~a~~~~Ip~~~i~~~~-~ 64 (205)
T Consensus 1 ~~~~kV~v~mSGGVDSSVaA~lLk~--Q---GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y 75 (356)
T COG0482 1 MKKKKVLVGMSGGVDSSVAAYLLKE--Q---GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEF 75 (356)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH--C---CCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHH
T ss_conf 9876799990577789999999997--6---9749999999641478886772567899999999809955998468998
Q ss_pred -----------------------CCCCCHHHHHHHHCCCCCCEEEEEEEEEEECC
Q ss_conf -----------------------32210124321000123430364311222057
Q gi|254780570|r 65 -----------------------ISRREHEKAILMQLSSIQPDLICLAGYMRLLS 96 (205)
Q Consensus 65 -----------------------~~~~~~~~~l~~~l~~~~~Dliv~~g~~~il~ 96 (205)
T Consensus 76 ~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~ 130 (356)
T COG0482 76 WNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRE 130 (356)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEC
T ss_conf 8888887789985799999651048788999999999975998578744676543