RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>1meo_A Phosophoribosylglycinamide formyltransferase; purine
biosynthesis; 1.72A {Homo sapiens} (A:)
Length = 209
Score = 158 bits (401), Expect = 5e-40
Identities = 80/186 (43%), Positives = 120/186 (64%)
Query: 6 IVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYI 65
+ + ISG G+N+ +LI +T++ + A+I V S+ + GL KA + +PT I +K Y
Sbjct: 3 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62
Query: 66 SRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHR 125
+R E + AI + L D++CLAG+MR+LS FV+ + K+LNIHPSLLP F G + H
Sbjct: 63 NRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHE 122
Query: 126 RVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLALK 185
+ L++G+ +TGCTVH V ++D G II Q AVPV DT ++LS++V AEH ++P AL+
Sbjct: 123 QALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182
Query: 186 YTILGK 191
G
Sbjct: 183 LVASGT 188
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} (A:)
Length = 212
Score = 157 bits (398), Expect = 8e-40
Identities = 76/188 (40%), Positives = 121/188 (64%)
Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64
NIV+ ISG G+N+ ++I A K N + VFS+ ++A GL +AR+ + T + +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 65 ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124
SR +++ ++ ++ PD++ LAG+MR+LS FV Y ++LNIHPSLLP +PGLHTH
Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTH 121
Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184
R+ L++G + G +VH VT +D GP+I QA VPV + D+E ++ +V + EH +YPL +
Sbjct: 122 RQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVI 181
Query: 185 KYTILGKT 192
+ G+
Sbjct: 182 SWFADGRL 189
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase
PURN; glycinamide ribonucleotide transformylase,
structure; 1.30A {Mycobacterium tuberculosis} PDB:
3dcj_A* (A:)
Length = 215
Score = 156 bits (396), Expect = 2e-39
Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 2/189 (1%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
+V+ SG G+ + SL+ A DYPA +V V + + A + VP F +
Sbjct: 12 PARLVVLASGTGSLLRSLLDA-AVGDYPARVVAVGV-DRECRAAEIAAEASVPVFTVRLA 69
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
D+ SR + AI ++ +PDL+ AG+MR+L F+ + + LN HP+LLP FPG H
Sbjct: 70 DHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTH 129
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
L G+K+TG TVH+V A D GPI+AQ VPV D E +L +++ E L
Sbjct: 130 GVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVA 189
Query: 183 ALKYTILGK 191
A+
Sbjct: 190 AVAALATHG 198
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
(A:)
Length = 216
Score = 154 bits (390), Expect = 8e-39
Identities = 67/187 (35%), Positives = 116/187 (62%)
Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64
I + +SG G+N+ ++I A + A I V SDN A + + +K V I K++
Sbjct: 3 KIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEF 62
Query: 65 ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124
S++E E+ ++L +L+ LAG+ R+LS +F++ + NK++NIHPSL+P F GLH
Sbjct: 63 PSKKEFEERXALELKKKGVELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQ 122
Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184
++ ++ G+K +GCTVH+V ++D GP+I QA VPV +D E++L+ ++L EH + P +
Sbjct: 123 KQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTV 182
Query: 185 KYTILGK 191
++ +
Sbjct: 183 QWFAQDR 189
>3lou_A Formyltetrahydrofolate deformylase; structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: MSE; 1.90A
{Burkholderia mallei} (A:94-292)
Length = 199
Score = 147 bits (371), Expect = 1e-36
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 3/189 (1%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
R ++I +S + L+ K + +IVG+ S++ + L A + +P P
Sbjct: 2 RPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHPDFAPL--AAQHGLPFRHFPIT 59
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
++ + E L + +L+ LA Y ++LS + N+ +NIH S LP F G
Sbjct: 60 AD-TKAQQEAQWLDVFETSGAELVILARYXQVLSPEASARLANRAINIHHSFLPGFKGAK 118
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
+ + G+K+ G T H VT ++DEGPII Q V L E +
Sbjct: 119 PYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLAR 178
Query: 183 ALKYTILGK 191
A+K I +
Sbjct: 179 AVKAFIERR 187
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural
genomics, niaid, seattle structural genomics center for
infectious disease; 2.20A {Anaplasma phagocytophilum HZ}
(A:)
Length = 215
Score = 146 bits (370), Expect = 2e-36
Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
+ + ISG G+N+ +L +A + I V S+N+ A+GL+ A+ +PTF +
Sbjct: 8 ELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKR- 66
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
+ + I L DL+CLAG+M +L FV + +KI+NIHPSLLP F GL+
Sbjct: 67 ----KPLDIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLN 122
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
+ ++G+KI GCT+H V +D GPII QAAVPV +DT SL+ ++L+AEH+ YP
Sbjct: 123 AQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPK 182
Query: 183 ALKYTILGK 191
+K K
Sbjct: 183 GVKLIAQDK 191
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase;
nucleotide biosynthesis, oxidoreductase; 1.7A {Homo
sapiens} (A:1-232)
Length = 232
Score = 146 bits (368), Expect = 3e-36
Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 1/192 (0%)
Query: 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60
+ +++ I + G+ + +K + V D + EK
Sbjct: 18 LYFQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFK 77
Query: 61 YKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120
Y + ++ + ++ + ++ +L L + + + + + ++ + HPSLLP G
Sbjct: 78 YSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRG 137
Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHL-L 179
L G K G ++ +D G ++ Q V DT S+L + L E +
Sbjct: 138 ASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKG 197
Query: 180 YPLALKYTILGK 191
A++ GK
Sbjct: 198 MVQAVRLIAEGK 209
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N
biosynthesis, methyltransferase; HET: FON U5P; 1.2A
{Escherichia coli} (A:1-207)
Length = 207
Score = 141 bits (357), Expect = 6e-35
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 8/189 (4%)
Query: 5 NIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
V+F + + +L+ A EI +F+ N
Sbjct: 2 KTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP 55
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
Y + + +++ + PD+I Y L+ + ++ N+H SLLP + G
Sbjct: 56 VYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRA 115
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
VL +G TG T+H + D G I+AQ + ++ D +L K+ A L
Sbjct: 116 PLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQ 175
Query: 183 ALKYTILGK 191
L G
Sbjct: 176 TLPAIKHGN 184
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET:
ATP UGA; 3.00A {Escherichia coli} (A:1-207)
Length = 207
Score = 141 bits (357), Expect = 6e-35
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 8/189 (4%)
Query: 5 NIVIFISGEG--TNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
V+F + + +L+ A EI +F+ N
Sbjct: 2 KTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP 55
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
Y + + +++ + PD+I Y L+ + ++ N+H SLLP + G
Sbjct: 56 VYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRA 115
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
VL +G TG T+H + D G I+AQ + ++ D +L K+ A L
Sbjct: 116 PLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQ 175
Query: 183 ALKYTILGK 191
L G
Sbjct: 176 TLPAIKHGN 184
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA,
translation initiation; 2.00A {Escherichia coli}
(A:1-204)
Length = 204
Score = 137 bits (346), Expect = 1e-33
Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 5/191 (2%)
Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63
+++ I +G + A +VGVF+ G K K
Sbjct: 2 ESLRIIFAGTPDFAARHLDALL--SSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG 59
Query: 64 ---YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120
+ + ++ +Q D++ + Y +L + +E + +N+H SLLP + G
Sbjct: 60 LPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRG 119
Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLY 180
+R L +G TG T+ + +D G ++ + + P++++DT +L K+
Sbjct: 120 AAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGL 179
Query: 181 PLALKYTILGK 191
LK G
Sbjct: 180 ITTLKQLADGT 190
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory
for structural genomics, PSI, protein structure
initiative, secsg; 2.05A {Clostridium thermocellum atcc
27405} (A:1-201)
Length = 201
Score = 126 bits (317), Expect = 2e-30
Identities = 20/190 (10%), Positives = 58/190 (30%), Gaps = 16/190 (8%)
Query: 2 IRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY 61
+ + G+ SL + I+ + ++ +
Sbjct: 6 HHHHHSSGLVPRGSQSTSLYKK---AGLXNIIIATTKSWNIKNAQKFKKENESKYN---- 58
Query: 62 KDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGL 121
++ ++ I P+ I + ++ ++ + H + LP G
Sbjct: 59 --TTIITNKDELTFEKVKLINPEYILFPHWSWIIPKEIF--ENFTCVVFHXTDLPFGRGG 114
Query: 122 HTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYP 181
+ +++ GIK T + V +D G I + + + T + + +++
Sbjct: 115 SPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIFXRA---SKIIFN 169
Query: 182 LALKYTILGK 191
+ + +
Sbjct: 170 DXIPELLTKR 179
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis/exocytosis complex; 7.90A {Bos taurus}
(A:1001-1076)
Length = 76
Score = 27.3 bits (61), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 12/40 (30%)
Query: 36 VFSDNSNAQGL-----VKARKEKVPTFPIPYKDYISRREH 70
VFS++ N Q L +KA + +V +YI+R ++
Sbjct: 17 VFSEHRNLQNLLILTAIKADRTRV-------MEYINRLDN 49
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B;
CBM_21 domain, carbohydrate binding domain, structural
genomics, NPPSFA; NMR {Homo sapiens} (A:)
Length = 156
Score = 26.4 bits (58), Expect = 3.0
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 51 KEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDF 99
+ V F P DY+ R +A + L + +AG +++ + F
Sbjct: 11 ESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAF 59
>2bdr_A Ureidoglycolate hydrolase; all beta protein, structural
genomics, PSI, protein structure initiative; 1.60A
{Pseudomonas putida KT2440} (A:)
Length = 175
Score = 25.2 bits (55), Expect = 6.0
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 107 ILNIHPSLLPL-FPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAV 157
I PL L H Q+ I + G +V A + + P+
Sbjct: 58 IFRADAQDXPLTVRXLERHPLGSQAFIPLLGNPFLIVVAPVGDAPVSGLVRA 109
>2vt3_A REX, redox-sensing transcriptional repressor REX;
transcriptional regulation, transcription regulation,
redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A
{Bacillus subtilis} PDB: 2vt2_A* (A:86-215)
Length = 130
Score = 25.3 bits (55), Expect = 6.8
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 8 IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQG 45
+ + G G + + + +I F N + G
Sbjct: 3 VILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG 40
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,447,127
Number of extensions: 58066
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 17
Length of query: 205
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 121
Effective length of database: 2,116,429
Effective search space: 256087909
Effective search space used: 256087909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)