RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 192 bits (490), Expect = 4e-50
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 3/189 (1%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
R ++I +S + L+ K + +IVG+ S++ + L FPI
Sbjct: 95 RPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITAD 154
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
+ E L + +L+ LA YM++LS + N+ +NIH S LP F G
Sbjct: 155 TK---AQQEAQWLDVFETSGAELVILARYMQVLSPEASARLANRAINIHHSFLPGFKGAK 211
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
+ + G+K+ G T H VT ++DEGPII Q V L E +
Sbjct: 212 PYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLAR 271
Query: 183 ALKYTILGK 191
A+K I +
Sbjct: 272 AVKAFIERR 280
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 188 bits (479), Expect = 6e-49
Identities = 76/187 (40%), Positives = 121/187 (64%)
Query: 5 NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDY 64
NIV+ ISG G+N+ ++I A K N + VFS+ ++A GL +AR+ + T + +
Sbjct: 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61
Query: 65 ISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTH 124
SR +++ ++ ++ PD++ LAG+MR+LS FV Y ++LNIHPSLLP +PGLHTH
Sbjct: 62 DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTH 121
Query: 125 RRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLAL 184
R+ L++G + G +VH VT +D GP+I QA VPV + D+E ++ +V + EH +YPL +
Sbjct: 122 RQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVI 181
Query: 185 KYTILGK 191
+ G+
Sbjct: 182 SWFADGR 188
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis;
1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A*
1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A*
1mej_B 1men_A*
Length = 209
Score = 177 bits (451), Expect = 1e-45
Identities = 80/186 (43%), Positives = 120/186 (64%)
Query: 6 IVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYI 65
+ + ISG G+N+ +LI +T++ + A+I V S+ + GL KA + +PT I +K Y
Sbjct: 3 VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK 62
Query: 66 SRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHR 125
+R E + AI + L D++CLAG+MR+LS FV+ + K+LNIHPSLLP F G + H
Sbjct: 63 NRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHE 122
Query: 126 RVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLALK 185
+ L++G+ +TGCTVH V ++D G II Q AVPV DT ++LS++V AEH ++P AL+
Sbjct: 123 QALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQ 182
Query: 186 YTILGK 191
G
Sbjct: 183 LVASGT 188
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics,
niaid, seattle structural genomics center for infectious
disease; 2.20A {Anaplasma phagocytophilum HZ}
Length = 215
Score = 177 bits (450), Expect = 2e-45
Identities = 76/192 (39%), Positives = 113/192 (58%), Gaps = 6/192 (3%)
Query: 1 MIRK-NIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPI 59
M ++ + + ISG G+N+ +L +A + I V S+N+ A+GL+ A+ +PTF +
Sbjct: 5 MKKELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVV 64
Query: 60 PYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFP 119
K + I L DL+CLAG+M +L FV + +KI+NIHPSLLP F
Sbjct: 65 KRKPL-----DIEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFK 119
Query: 120 GLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLL 179
GL+ + ++G+KI GCT+H V +D GPII QAAVPV +DT SL+ ++L+AEH+
Sbjct: 120 GLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVC 179
Query: 180 YPLALKYTILGK 191
YP +K K
Sbjct: 180 YPKGVKLIAQDK 191
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 165 bits (418), Expect = 8e-42
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 3/189 (1%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
R +VI +S + L+ + ++V V S++ + + L K F + K
Sbjct: 90 RPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPK 149
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
D + E+ +L + +L+ LA YM++LS + +NIH SLLP F G
Sbjct: 150 D---KPGQERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAINIHHSLLPGFKGAK 206
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
+ + G+K+ G T H + ++DEGPIIAQ V L K E L
Sbjct: 207 PYHQAYNKGVKMVGATAHYINNDLDEGPIIAQGVEVVDHSHYPEDLIAKGRDIECLTLAR 266
Query: 183 ALKYTILGK 191
A+ Y I +
Sbjct: 267 AVGYHIERR 275
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae
PV}
Length = 302
Score = 162 bits (412), Expect = 4e-41
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 3/189 (1%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
+K +V+ S E + L+ ++ +I V S++ + + +V+ P+ K
Sbjct: 105 KKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPYYHVPVDPK 164
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
D + + + Q D++ LA YM++L Y ++++NIH S LP F G
Sbjct: 165 D---KEPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREYAHQVINIHHSFLPSFVGAK 221
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
+ + G+K+ G T H VT +D GPII Q V VS +D+ ++ + E ++
Sbjct: 222 PYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLAR 281
Query: 183 ALKYTILGK 191
L+ + +
Sbjct: 282 GLRAHLEDR 290
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 158 bits (400), Expect = 1e-39
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 2/189 (1%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
RK +VI +S + L+ + + E+VG+ S N + L + +P +P
Sbjct: 88 RKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS-NHPREALSVSLVGDIPFHYLPVT 146
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
++ E I ++ Q DLI LA YM++LS D + +NIH S LP F G
Sbjct: 147 PA-TKAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHHSFLPGFKGAK 205
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
+ + G+K+ G T H VTA++DEGPIIAQ VS +D+ L +K E +
Sbjct: 206 PYHQAHTRGVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSR 265
Query: 183 ALKYTILGK 191
A+ + +
Sbjct: 266 AVLLFLEDR 274
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas
palustris}
Length = 288
Score = 155 bits (392), Expect = 8e-39
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 2/189 (1%)
Query: 3 RKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYK 62
R+ +++ +S + ++ + D + S++ +P + P
Sbjct: 89 RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYHFPVN 147
Query: 63 DYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLH 122
+RR+ E AI ++ DL+ LA YM++LS + + +NIH S LP F G
Sbjct: 148 KD-TRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAK 206
Query: 123 THRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPL 182
+ + G+K+ G T H VT+ +DEGPII Q +S +DT + L +K E +
Sbjct: 207 PYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSR 266
Query: 183 ALKYTILGK 191
AL Y + +
Sbjct: 267 ALHYHLDDR 275
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 141 bits (355), Expect = 1e-34
Identities = 69/191 (36%), Positives = 121/191 (63%), Gaps = 2/191 (1%)
Query: 1 MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60
M++ I + +SG G+N+ ++I A + A I V SDN A + + +K V I
Sbjct: 1 MLK--IGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQ 58
Query: 61 YKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120
K++ S++E E+ + ++L +L+ LAG+MR+LS +F++ + NK++NIHPSL+P F G
Sbjct: 59 RKEFPSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQG 118
Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLY 180
LH ++ ++ G+K +GCTVH+V ++D GP+I QA VPV +D E++L+ ++L EH +
Sbjct: 119 LHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKIL 178
Query: 181 PLALKYTILGK 191
P +++ +
Sbjct: 179 PQTVQWFAQDR 189
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A*
Length = 314
Score = 134 bits (339), Expect = 1e-32
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 28 DYPAEIVGVFSDNSNAQGLVK----------ARKEKVPTFPIPYKDYISRREHEKAILMQ 77
+VGVF+ G K A ++ +P F +
Sbjct: 24 SSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQ-------PVSLRPQENQQL 76
Query: 78 LSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGC 137
++ +Q D++ + Y +L + +E + +N+H SLLP + G +R L +G TG
Sbjct: 77 VAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGV 136
Query: 138 TVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLALKYTILGK 191
T+ + +D G ++ + + P++++DT +L K+ LK G
Sbjct: 137 TIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGT 190
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 111 bits (278), Expect = 1e-25
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 4/162 (2%)
Query: 32 EIVGVFS--DNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLA 89
EI +F+ DN + + IP Y + + +++ + PD+I
Sbjct: 25 EISAIFTHTDNPGEKAFYGSVARLAAERGIPV--YAPDNVNHPLWVERIAQLSPDVIFSF 82
Query: 90 GYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEG 149
Y L+ + ++ N+H SLLP + G VL +G TG T+H + D G
Sbjct: 83 YYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAG 142
Query: 150 PIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLALKYTILGK 191
I+AQ + ++ D +L K+ A L L G
Sbjct: 143 AIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGN 184
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN;
glycinamide ribonucleotide transformylase, structure;
1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Length = 215
Score = 108 bits (269), Expect = 1e-24
Identities = 67/188 (35%), Positives = 98/188 (52%), Gaps = 2/188 (1%)
Query: 4 KNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKD 63
+V+ SG G+ + SL+ A + YPA +V V D + A + VP F + D
Sbjct: 13 ARLVVLASGTGSLLRSLLDAAVGD-YPARVVAVGVDR-ECRAAEIAAEASVPVFTVRLAD 70
Query: 64 YISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHT 123
+ SR + AI ++ +PDL+ AG+MR+L F+ + + LN HP+LLP FPG H
Sbjct: 71 HPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHG 130
Query: 124 HRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLYPLA 183
L G+K+TG TVH+V A D GPI+AQ VPV D E +L +++ E L A
Sbjct: 131 VADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAA 190
Query: 184 LKYTILGK 191
+
Sbjct: 191 VAALATHG 198
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP:
b.46.1.1 c.65.1.1
Length = 260
Score = 57.2 bits (137), Expect = 3e-09
Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 14 GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKA 73
G+ SL + I+ + + N + K +KE + ++
Sbjct: 18 GSQSTSLYKKAGL----MNIIIATTKSWNIKNAQKFKKENESKYNTTII-----TNKDEL 68
Query: 74 ILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIK 133
++ I P+ I + ++ ++ E++ + H + LP G + +++ GIK
Sbjct: 69 TFEKVKLINPEYILFPHWSWIIPKEIFENF--TCVVFHMTDLPFGRGGSPLQNLIERGIK 126
Query: 134 ITGCTVHMVTANMDEGPIIAQ 154
T + V +D G I +
Sbjct: 127 KTKISAIKVDGGIDTGDIFFK 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.4 bits (102), Expect = 4e-05
Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 73/197 (37%)
Query: 20 LIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPY-KDYISR---------RE 69
L +A + + A++V +F N + ++ T+ D I R
Sbjct: 145 LFRAVGEGN--AQLVAIFGGQGNTDDYFEELRDLYQTYH-VLVGDLIKFSAETLSELIRT 201
Query: 70 HEKAI--------LMQ-LS--SIQPD------------LIC---LAGYMRLLSRDFVESY 103
A +++ L S PD LI LA Y+ V +
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV-------VTA- 253
Query: 104 KNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQD 163
K+L P L R L G TG H +G ++ A+ + D
Sbjct: 254 --KLLGFTPGEL---------RSYL-KGA--TG---H------SQG-LVTAVAI--AETD 287
Query: 164 TESSLSQKVLSAEHLLY 180
+ S V A +L+
Sbjct: 288 SWESFFVSVRKAITVLF 304
Score = 40.3 bits (94), Expect = 3e-04
Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 48/170 (28%)
Query: 56 TFPIPYKDYISRREHEKAILMQLS------------SIQPDLICLAGYMRLLSRDFVESY 103
+P + + ++ L + +L + ++ +S S
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL--VGKFLGYVSSLVEPSK 76
Query: 104 KNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGP---------II-- 152
+ + L F L+ G +H + A + + +I
Sbjct: 77 VGQFDQVLNLCLTEF-----ENCYLE------GNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 153 ---AQAAV--PVSSQDTESSLSQKVLSAEHLLYPLALKYTILGKTSNSND 197
A+ P + + S+L + V L I G N++D
Sbjct: 126 YITARIMAKRPFDKK-SNSALFRAVGEGNAQL------VAIFGGQGNTDD 168
Score = 37.2 bits (86), Expect = 0.002
Identities = 41/257 (15%), Positives = 59/257 (22%), Gaps = 137/257 (53%)
Query: 12 GEG--TNMLS-----------LIQATKKNDY-PAE----IVGVFSDNS--NA-------- 43
EG + MLS + T N + PA I V N N
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLV---NGAKNLVVSGPPQS 385
Query: 44 -QGLV-KARKEKVPTFP----IPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSR 97
GL RK K P+ IP+ S R
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPF----SER----------------------------- 412
Query: 98 DFVESYKNKILNIHPSLLPLFPGLHTH------RRVLQ----SGIKITGCTVHMVTANMD 147
K L LP+ H+H + + + +
Sbjct: 413 --------K-LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK---------- 453
Query: 148 EGPIIAQAAVPVSSQDTES-----SLSQKVLSA-------EHLLYPLALKYT---IL--- 189
+PV DT LS + + + ++ IL
Sbjct: 454 ------DIQIPV--YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 190 -GKTSNSNDHHHLIGIG 205
G S G+G
Sbjct: 506 PGGAS---------GLG 513
Score = 33.8 bits (77), Expect = 0.026
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 50/158 (31%)
Query: 64 YISRREHEKAILMQLSSIQPDLI--CLAG------YM---RLLSRDFVESYKNKILNIHP 112
+I R +E +S+ P ++ L M L+++ V+ Y NK N H
Sbjct: 305 FIGVRCYEAY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK-TNSH- 359
Query: 113 SLLP----LFPGLHTHRR--VLQSG--IKITGCTVHMVTANMDEGPIIAQAAVPVSSQDT 164
LP + L + V+ SG + G + + A G + Q+ +P
Sbjct: 360 --LPAGKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAPSG--LDQSRIP------ 408
Query: 165 ESSLSQKVLSAEHLLYPLALKYTILGKTSNSNDH-HHL 201
S++ L + P+A + H H L
Sbjct: 409 ---FSERKLKFSNRFLPVASPF-----------HSHLL 432
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.6 bits (65), Expect = 0.51
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 16/36 (44%)
Query: 154 QAAVPVSSQDTESSLSQKVLSAEHLLYP-LALKYTI 188
QA++ + + D SA P LA+K T+
Sbjct: 26 QASLKLYADD----------SA-----PALAIKATM 46
Score = 28.0 bits (61), Expect = 1.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 10/31 (32%)
Query: 128 LQSGIKITGCTVHMVTANMDEGPIIA-QAAV 157
LQ+ +K+ A+ D P +A +A +
Sbjct: 25 LQASLKLY--------AD-DSAPALAIKATM 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A
Length = 1630
Score = 29.7 bits (67), Expect = 0.55
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 12/40 (30%)
Query: 36 VFSDNSNAQGL-----VKARKEKVPTFPIPYKDYISRREH 70
VFS++ N Q L +KA + +V +YI+R ++
Sbjct: 1017 VFSEHRNLQNLLILTAIKADRTRV-------MEYINRLDN 1049
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin,
PSI, protein structure initiative; HET: HEM; 1.20A
{Pseudomonas aeruginosa PAO1} SCOP: a.1.1.2
Length = 134
Score = 28.0 bits (62), Expect = 1.4
Identities = 6/71 (8%), Positives = 17/71 (23%)
Query: 96 SRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQA 155
S F + + L P + F + I ++ + + + +
Sbjct: 19 STGFFDDFYRHFLASSPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGAS 78
Query: 156 AVPVSSQDTES 166
+
Sbjct: 79 HSRAALDIRPE 89
>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C,
DOXP/MEP pathway, oxidoreductase, isoprene
biosynthesis, metal-binding; 1.9A {Mycobacterium
tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A
2jcx_A* 2jcy_A 2jd0_A*
Length = 413
Score = 26.6 bits (58), Expect = 4.6
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 3 RKNIVIFIS-GE-GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTF 57
R +V+ S G GT L +I E+VG+ + ++ L++ R + T
Sbjct: 12 RLRVVVLGSTGSIGTQALQVIADNPDR---FEVVGLAAGGAHLDTLLRQRAQTGVTN 65
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
Length = 264
Score = 26.2 bits (57), Expect = 5.8
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 64 YISRREHEKAILMQLSSIQPDLICLAGY--MRLLS--RDFVESYKNKILNIHPSLLPLFP 119
+ S+ E E IL+ S L+ + M L+ RD V+ N+ + P L+ L P
Sbjct: 67 HFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTS-PPQLMCLMP 125
Query: 120 GLHTHRR-VLQSGIK------ITGCTVHMVTANMDEGPIIAQAAVPVSSQD 163
G+ HR LQ+G+ ++ ++ M T +D+ +A A+ + + D
Sbjct: 126 GMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPD 176
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 26.1 bits (57), Expect = 6.1
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 8 IFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISR 67
+ G+ ++ L + + E + S N+N + KA + + P +
Sbjct: 363 FGLYGDPDFVMGLTRFLLELG--CEPTVILSHNANKR-WQKAMNKMLDASPYGRDSEVFI 419
Query: 68 REHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRR 126
+ + QPD + Y + + RD + K + + PLF H HR+
Sbjct: 420 NCDLWHFRSLMFTRQPDFMIGNSYGKFIQRDTLAKGKAFEVPLIRLGFPLFDRHHLHRQ 478
>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta
sandwich, protein binding; HET: TAM; 1.80A
{Streptomyces exfoliatus} PDB: 3gmw_B
Length = 156
Score = 25.3 bits (55), Expect = 9.5
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 14 GTNMLSLIQATKKNDYPAEIVGVFSDNSNA-----QGLVKARKEKV 54
G S++ T+ DY F+D + L KA+ V
Sbjct: 34 GVIGDSILCFTESGDYAPYGGFSFTDEGELWSKRNEYLYKAKTPSV 79
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,634,213
Number of extensions: 68133
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 29
Length of query: 205
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 117
Effective length of database: 3,559,758
Effective search space: 416491686
Effective search space used: 416491686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)