BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide
formyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 205

 Score =  421 bits (1083), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60
           MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP
Sbjct: 1   MIRKNIVIFISGEGTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKVPTFPIP 60

Query: 61  YKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120
           YKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG
Sbjct: 61  YKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPG 120

Query: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLY 180
           LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLY
Sbjct: 121 LHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESSLSQKVLSAEHLLY 180

Query: 181 PLALKYTILGKTSNSNDHHHLIGIG 205
           PLALKYTILGKTSNSNDHHHLIGIG
Sbjct: 181 PLALKYTILGKTSNSNDHHHLIGIG 205


>gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 288

 Score = 72.4 bits (176), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 33  IVGVFSDNSNAQGLVKARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYM 92
           IVGV S+++  + LV+    ++P + +P  +  ++ E E+ ++  +     +L+ LA YM
Sbjct: 113 IVGVVSNHTTHKKLVE--NYQLPFYYLPMTEQ-NKIESEQKLINIIEKNNVELMILARYM 169

Query: 93  RLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPII 152
           ++LS         +I+NIH S LP F G + +++  + G+KI G T H     +D GPII
Sbjct: 170 QILSDHLCHKMTGRIINIHHSFLPSFKGANPYKQAYEYGVKIIGATAHYAICELDAGPII 229

Query: 153 AQAAVPVSSQDT 164
            Q  V V+   T
Sbjct: 230 EQDVVRVTHAQT 241


>gi|255764462|ref|YP_003064709.2| methionyl-tRNA formyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 310

 Score = 45.4 bits (106), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 48  KARKEKVPTFPIPYKDYISRREHEKAILMQLSSIQPDLICLAGYMRLLSRDFVESYKNKI 107
           KA++  +P   +P K  + + E+E     Q  S   D+  +  Y  ++ +  + + K   
Sbjct: 54  KAQEFSLPAL-VPTK--LGQEEYE-----QFLSFNADVAVVVAYGLVIPQRILNATKLGF 105

Query: 108 LNIHPSLLPLFPGLHTHRRVLQSGIKITGCTVHMVTANMDEGPIIAQAAVPVSSQDTESS 167
            N H SLLP + G    +R + +G   TG  +  +  ++D GP+     VP+SS    + 
Sbjct: 106 YNGHASLLPRWRGAAPIQRAIMAGDNETGIAIMKMDKHLDTGPVAFMRKVPISSNINTAG 165

Query: 168 LSQKV 172
           L Q++
Sbjct: 166 LQQEL 170


>gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 80

 Score = 25.0 bits (53), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 14 GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKV 54
          G  + ++ Q   +N    ++VG+FS  SNA  + K + +++
Sbjct: 16 GGELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQM 56


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,442
Number of Sequences: 1233
Number of extensions: 4883
Number of successful extensions: 11
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 328,796
effective HSP length: 70
effective length of query: 135
effective length of database: 242,486
effective search space: 32735610
effective search space used: 32735610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)