Query gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 182 No_of_seqs 111 out of 492 Neff 8.9 Searched_HMMs 13730 Date Wed Jun 1 09:29:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780571.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2croa_ a.35.1.2 (A:) cro 434 16.9 22 0.0016 12.2 1.4 26 1-27 1-26 (65) 2 d1ppjg_ f.23.13.1 (G:) Ubiquin 9.4 37 0.0027 10.8 4.0 31 2-41 32-62 (75) 3 d1kf6d_ f.21.2.2 (D:) Fumarate 7.4 46 0.0033 10.3 2.1 26 17-42 19-44 (119) 4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.4 52 0.0038 10.0 2.1 22 16-37 57-79 (91) 5 d2r1jl1 a.35.1.2 (L:3-68) P22 6.0 55 0.004 9.8 0.9 25 2-27 2-26 (66) 6 d1nc8a_ g.40.1.1 (A:) HIV nucl 5.9 58 0.0042 9.7 0.6 7 176-182 6-12 (29) 7 d1x4la2 g.39.1.3 (A:37-66) Fou 5.7 38 0.0028 10.8 -1.0 8 175-182 19-26 (30) 8 d2od5a1 a.4.5.70 (A:6-96) Hypo 5.3 65 0.0047 9.4 1.6 20 2-22 8-27 (91) 9 d2chra2 d.54.1.1 (A:1-126) Chl 5.3 65 0.0048 9.4 1.3 25 2-26 85-109 (126) 10 d1r0ma2 d.54.1.1 (A:6-132) N-a 5.2 67 0.0049 9.3 0.1 23 4-26 88-110 (127) No 1 >d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Probab=16.93 E-value=22 Score=12.21 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=19.7 Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 924799999751244554899999999 Q gi|254780571|r 1 MKCIKNYILRFLSRENGVVAVEMAIIL 27 (182) Q Consensus 1 ~~~~~~~lrrf~rd~~G~aaVEFAli~ 27 (182) |+.+...+|..|. +.|...-|||-.+ T Consensus 1 M~~i~~rlr~~R~-~~gltq~~lA~~~ 26 (65) T d2croa_ 1 MQTLSERLKKRRI-ALKMTQTELATKA 26 (65) T ss_dssp CCSHHHHHHHHHH-HTTCCHHHHHHHH T ss_pred CHHHHHHHHHHHH-HCCCCHHHHHHHH T ss_conf 9489999999999-8499999999997 No 2 >d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Probab=9.38 E-value=37 Score=10.83 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2479999975124455489999999999999999999999 Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEIT 41 (182) Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVEFAli~P~ll~ll~~~~e~~ 41 (182) +.+-+.+||++. ++-.++|+|++..+ +.+.+ T Consensus 32 ~gi~N~~RR~~~--------~~l~v~PPfi~~Y~-iy~W~ 62 (75) T d1ppjg_ 32 KGIPNVLRRTRA--------CILRVAPPFVAFYL-VYTWG 62 (75) T ss_dssp THHHHHHHHHHH--------HHHHHHHHHHHHHH-HHHHH T ss_pred HCCCHHHHHHHH--------HCEEECCHHHHHHH-HHHHH T ss_conf 625189998687--------41377077999999-99988 No 3 >d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]} Probab=7.39 E-value=46 Score=10.31 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 54899999999999999999999999 Q gi|254780571|r 17 GVVAVEMAIILPILLLIYMAVYEITM 42 (182) Q Consensus 17 G~aaVEFAli~P~ll~ll~~~~e~~~ 42 (182) |+--.=+|++.|++++++--.+-+|. T Consensus 19 gAGGm~~A~~~Pvlill~giLlPlG~ 44 (119) T d1kf6d_ 19 GAGGMWSAIIAPVMILLVGILLPLGL 44 (119) T ss_dssp HHHHHHHHHTHHHHHHHHHTTGGGTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 47720589998899999999996126 No 4 >d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]} Probab=6.35 E-value=52 Score=9.97 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=13.2 Q ss_pred CCHHHHHHHHHHHH-HHHHHHHH Q ss_conf 55489999999999-99999999 Q gi|254780571|r 16 NGVVAVEMAIILPI-LLLIYMAV 37 (182) Q Consensus 16 ~G~aaVEFAli~P~-ll~ll~~~ 37 (182) .|...+|.....-| ++++.+++ T Consensus 57 ~~n~~lEi~WtiIP~iil~~iav 79 (91) T d1fftb2 57 SHSNKVEAVVWTVPILIIIFLAV 79 (91) T ss_dssp CCCSHHHHHTTHHHHHHHHHHHH T ss_pred CCCCEEHHHHHHHHHHHHHHHHH T ss_conf 67964114689989999999999 No 5 >d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Probab=6.03 E-value=55 Score=9.80 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 24799999751244554899999999 Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVEMAIIL 27 (182) Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVEFAli~ 27 (182) +.+.+.+|++| .++|...-|||-.+ T Consensus 2 ~~ig~rik~~R-~~~g~tq~~lA~~~ 26 (66) T d2r1jl1 2 QLMGERIRARR-KKLKIRQAALGKMV 26 (66) T ss_dssp CCHHHHHHHHH-HHHTCCHHHHHHHH T ss_pred HHHHHHHHHHH-HHCCCCHHHHHHHH T ss_conf 79999999999-98599999999997 No 6 >d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]} Probab=5.85 E-value=58 Score=9.70 Aligned_cols=7 Identities=43% Similarity=1.146 Sum_probs=0.0 Q ss_pred CEECCCC Q ss_conf 3425899 Q gi|254780571|r 176 QIVCRDC 182 (182) Q Consensus 176 ~i~c~~c 182 (182) .|.|.|| T Consensus 6 ~ikCfNC 12 (29) T d1nc8a_ 6 VIRCWNC 12 (29) T ss_dssp CCBCTTT T ss_pred EEEEECC T ss_conf 6676527 No 7 >d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.73 E-value=38 Score=10.79 Aligned_cols=8 Identities=63% Similarity=1.589 Sum_probs=0.0 Q ss_pred CCEECCCC Q ss_conf 73425899 Q gi|254780571|r 175 DQIVCRDC 182 (182) Q Consensus 175 ~~i~c~~c 182 (182) +-|.|.|| T Consensus 19 ddilc~dc 26 (30) T d1x4la2 19 DDILCPDC 26 (30) T ss_dssp SSEECHHH T ss_pred CCEECCCC T ss_conf 64654654 No 8 >d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples} Probab=5.33 E-value=65 Score=9.39 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCCCCCHHHHH Q ss_conf 247999997512445548999 Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVE 22 (182) Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVE 22 (182) +.||..++.|..++ |.-++| T Consensus 8 ~rlR~~I~k~L~~~-p~NT~e 27 (91) T d2od5a1 8 VRIREKIKKFLGDR-PRNTAE 27 (91) T ss_dssp HHHHHHHHHHTSSS-CEEHHH T ss_pred HHHHHHHHHHHHCC-CCCHHH T ss_conf 99999999999739-976899 No 9 >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Probab=5.30 E-value=65 Score=9.37 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 2479999975124455489999999 Q gi|254780571|r 2 KCIKNYILRFLSRENGVVAVEMAII 26 (182) Q Consensus 2 ~~~~~~lrrf~rd~~G~aaVEFAli 26 (182) +.+..+.+.+..+.-..++||+||. T Consensus 85 ~~~~~~~~~~~~~~~A~aaid~Alw 109 (126) T d2chra2 85 GALQTMARAVTGNASAKAAVEMALL 109 (126) T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 9999865302443288999999999 No 10 >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Probab=5.21 E-value=67 Score=9.31 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 79999975124455489999999 Q gi|254780571|r 4 IKNYILRFLSRENGVVAVEMAII 26 (182) Q Consensus 4 ~~~~lrrf~rd~~G~aaVEFAli 26 (182) +...++++.......++||+|+. T Consensus 88 ~~~~~~~~~~~~~a~aaid~Alw 110 (127) T d1r0ma2 88 VSDALGSYRGNRMARAMVEMAAW 110 (127) T ss_dssp HHHTTTTSCSCHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHH T ss_conf 75122104775479999999999 Done!