RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780571|ref|YP_003064984.1| hypothetical protein
CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62]
         (182 letters)



>gnl|CDD|34568 COG4961, TadG, Flp pilus assembly protein TadG [Intracellular
           trafficking and secretion].
          Length = 185

 Score = 52.8 bits (126), Expect = 6e-08
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 1   MKCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTRFASHMGDM 60
            + ++  + RF     G  AVE A++ P LLL+   + E  + +   + L   A      
Sbjct: 5   RRGLRGLLRRFRRDRRGAAAVEFALVAPPLLLLVFGIVEFGIAFLAKQSLQNAADAAARA 64

Query: 61  VAQETSINKQYLQGFENFLRATMYPYRTPNHSIIVTGYWLDNKQIVRKMWNWSSSNVKVE 120
            A+  + +   L   +    A          +        +           + ++    
Sbjct: 65  AARGLTTDAADL---DTIQAAATAFLNAIAPANAFLTVQSNTPSRGTVTVTANVAD---- 117

Query: 121 REDIPASIKDASTFIVRAEVSINY---RTLVFSKILPD--------SLKGDIVLRKVYYY 169
                A++ D S F V + V+++    R LV   ++PD        S    I +      
Sbjct: 118 -----ATLFDTSQFTVTSAVTVSINLARGLVLVAVVPDLTGPGTSGSRSATIPVGATTLV 172

Query: 170 RQRLGDQIVCRDC 182
           R R+ + I     
Sbjct: 173 RVRIDETITPGID 185


>gnl|CDD|37421 KOG2210, KOG2210, KOG2210, Oxysterol-binding protein [Signal
           transduction mechanisms].
          Length = 392

 Score = 33.4 bits (76), Expect = 0.038
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 15/102 (14%)

Query: 10  RFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTRFA------------SHM 57
           +FL      +AV M     + LL +   Y IT     ++ +   A               
Sbjct: 173 KFLGNS---IAVAMIGKGVLKLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPK 229

Query: 58  GDMVAQETSINKQYLQGFENFLRATMYPYRTPNHSIIVTGYW 99
             + A   SI K +L G  +F   ++           ++G W
Sbjct: 230 TGLSAILESILKPFLGGKNSFNARSIKGPIDKKDFCSISGEW 271


>gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp
          [Intracellular trafficking and secretion].
          Length = 58

 Score = 29.1 bits (65), Expect = 0.69
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 4  IKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTRFASHMGDMVAQ 63
          +K  + RFL  E+G  A+E       L+   +AV  I    TL   L    + +G  +  
Sbjct: 1  MKKLLRRFLRDEDGATAIEYG-----LIAALIAVVIIAGGSTLGTALKGAFTAIGAALTG 55

Query: 64 ETS 66
            +
Sbjct: 56 AAA 58


>gnl|CDD|143919 pfam00151, Lipase, Lipase. 
          Length = 329

 Score = 27.8 bits (62), Expect = 1.7
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 8/43 (18%)

Query: 82  TMYPYRTPNHSIIVTGYWLDNKQIVRKMWNWSSSNVKVEREDI 124
           T Y   T N  + V G        V K+       + V  E++
Sbjct: 116 TFYRQATLN--VRVVG------AEVAKLLVELEEELNVSPENV 150


>gnl|CDD|145933 pfam03048, Herpes_UL92, UL92 family.  Members of this family, found
           in several herpesviruses, include EBV BDLF4, HCMV UL92,
           HHV8 31, HSV6 U63. Their function is unknown. The N
           terminus of this protein contains 6 conserved cysteines
           and histidines that might form a zinc binding domain (A
           Bateman pers. obs.).
          Length = 192

 Score = 27.6 bits (62), Expect = 2.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 3   CIKNYILRFLSRENGVVAVEMAII 26
            +K+ +  + SR N    V+ AI 
Sbjct: 89  SLKSDVYSYFSRSNVYAEVKQAIF 112


>gnl|CDD|37856 KOG2645, KOG2645, KOG2645, Type I phosphodiesterase/nucleotide
           pyrophosphatase [General function prediction only].
          Length = 418

 Score = 27.2 bits (60), Expect = 2.9
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 83  MYPYRT-PNHSIIVTGYWLDNKQIV-RKMWNWSSSNV 117
           ++P +T PNH  IVTG + ++  IV    ++  ++  
Sbjct: 62  VFPTKTFPNHYSIVTGLYPESHGIVGNYFFDPKTNKE 98


>gnl|CDD|153334 cd07650, F-BAR_Syp1p_like, The F-BAR (FES-CIP4 Homology and
           Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein.
           F-BAR domains are dimerization modules that bind and
           bend membranes and are found in proteins involved in
           membrane dynamics and actin reorganization. Syp1p is
           associated with septins, a family of GTP-binding
           proteins that serve as elements of septin filaments,
           which are required for cell morphogenesis and division.
           Syp1p regulates cell-cycle dependent septin cytoskeletal
           dynamics in yeast. It contains an N-terminal F-BAR
           domain and a C-terminal domain of unknown function named
           SAFF which is also present in FCH domain Only (FCHO)
           proteins and endophilin interacting protein 1. F-BAR
           domains form banana-shaped dimers with a
           positively-charged concave surface that binds to
           negatively-charged lipid membranes. They can induce
           membrane deformation in the form of long tubules.
          Length = 228

 Score = 26.1 bits (58), Expect = 5.4
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 43  LYTLSKRLTRFASHMGDMVAQETSINKQYLQGFENF 78
           L  L   L +F +H  D   + T   ++ +     F
Sbjct: 174 LNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEF 209


>gnl|CDD|133127 cd06596, GH31_CPE1046, CPE1046 is an uncharacterized Clostridium
           perfringens protein with a glycosyl hydrolase family 31
           (GH31) domain. The domain architecture of CPE1046 and
           its orthologs includes a C-terminal fibronectin type 3
           (FN3) domain and a coagulation factor 5/8 type C domain
           in addition to the GH31 domain. Enzymes of the GH31
           family possess a wide range of different hydrolytic
           activities including alpha-glucosidase (glucoamylase and
           sucrase-isomaltase), alpha-xylosidase,
           6-alpha-glucosyltransferase,
           3-alpha-isomaltosyltransferase and alpha-1,4-glucan
           lyase. All GH31 enzymes cleave a terminal carbohydrate
           moiety from a substrate that varies considerably in
           size, depending on the enzyme, and may be either a
           starch or a glycoprotein.
          Length = 261

 Score = 25.8 bits (57), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 5/22 (22%)

Query: 65  TSINKQYLQGFENFLRATMYPY 86
           TSIN+ YL+     L+  + PY
Sbjct: 243 TSINRDYLK-----LKMRLMPY 259


>gnl|CDD|33391 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
           transport and metabolism].
          Length = 251

 Score = 25.6 bits (56), Expect = 8.3
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 90  NHSIIVTGYWLDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFI 135
           N  I V GY  D   I   MW    S  KV          DA T  
Sbjct: 161 NDRITVIGYPGDKPNIG-TMW---ESTGKVNSIKGNKLFYDADTLP 202


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,195,691
Number of extensions: 108127
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 18
Length of query: 182
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,362,145
Effective search space: 410041630
Effective search space used: 410041630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)