RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62] (182 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.4 bits (89), Expect = 0.001 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 89/215 (41%) Query: 8 ILRFLSRENGVVAVE----MAIILPILLLIYMAVYEITMLYTLSKRLTRFASHMGDMVAQ 63 IL +L + + + I P++ +I +A Y +T +K L G++ Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-----AKLL---GFTPGEL--- 263 Query: 64 ETSINKQYLQGFENFLRATMYPYRTPNHS--IIV--------TGYW---LDN-KQIVRKM 109 + YL+G AT HS ++ + W + ++ + + Sbjct: 264 -----RSYLKG------AT-------GHSQGLVTAVAIAETDS--WESFFVSVRKAITVL 303 Query: 110 WNW--------------SSSNVK--VER-EDIPA---SIKDAS-----TFIV-------- 136 + + S ++ +E E +P+ SI + + ++ Sbjct: 304 F-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362 Query: 137 --RAEVS-IN-YRTLVFSKILPDSLKG-DIVLRKV 166 + E+S +N + LV S P SL G ++ LRK Sbjct: 363 GKQVEISLVNGAKNLVVSG-PPQSLYGLNLTLRKA 396 Score = 35.3 bits (81), Expect = 0.007 Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 80/162 (49%) Query: 35 MAVY-----------EITMLYT----LSKRLTRF-ASHMGDMVAQETSINKQYLQGFENF 78 +A++ E+ LY L L +F A + +++ K + QG N Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NI 215 Query: 79 LRATMYPYRTPNHSIIVTGYWLDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFIVRA 138 L WL+N + P D +++ Sbjct: 216 LE------------------WLEN------------------PSNTPDK--D---YLLSI 234 Query: 139 EVSINYRTLVFSKILPDSLKGDIVLRKVYYYRQRLGDQIVCR 180 +S P L G V++ +Y + + Sbjct: 235 PIS-----------CP--LIG--VIQLAHYV-------VTAK 254 Score = 28.4 bits (63), Expect = 0.99 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%) Query: 143 NYRTLVFSKILPDSLKGDIVLRKV------YYYRQRLG 174 NY ++F I+ LK + + +++ Y +R G Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.0 bits (79), Expect = 0.009 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 7/32 (21%) Query: 103 KQIVRKMWNWSSSNVKVERED-IPA-SIKDAS 132 KQ ++K+ +++K+ +D PA +IK A+ Sbjct: 19 KQALKKL----QASLKLYADDSAPALAIK-AT 45 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 28.0 bits (62), Expect = 1.5 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 11/51 (21%) Query: 138 AEVSINYRT------LVFSKILPDSLKGDIVLRKVYYYRQRLGDQIVCRDC 182 SI+ R L P+ + V + + GD +VC C Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKI--VERFSE--GD-VVCALC 48 >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 Score = 25.9 bits (56), Expect = 5.9 Identities = 3/25 (12%), Positives = 11/25 (44%) Query: 4 IKNYILRFLSRENGVVAVEMAIILP 28 I + +E ++ ++ ++ P Sbjct: 107 IIQTWRQHFIQEEQILEIDCTMLTP 131 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.138 0.411 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,574,532 Number of extensions: 66834 Number of successful extensions: 244 Number of sequences better than 10.0: 1 Number of HSP's gapped: 244 Number of HSP's successfully gapped: 8 Length of query: 182 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 95 Effective length of database: 3,584,002 Effective search space: 340480190 Effective search space used: 340480190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 53 (24.5 bits)