RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780571|ref|YP_003064984.1| hypothetical protein
CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62]
         (182 letters)



>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
           1280]}
          Length = 183

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 59  DMVAQETSINKQYLQGFENFLRATMYPYRTPNHSIIVTGYWLDNKQIVRKMWN-WSSS 115
           + V Q T  N   +   ++  +    P+    H++ V G    N Q     WN W + 
Sbjct: 100 NQVDQLTKDNVGIMILAQSVSQNPNDPH--LGHALAVVGNAKINDQEKLIYWNPWDTE 155


>d1bifa2 c.60.1.4 (A:250-468)
           6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
           phosphatase domain {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 219

 Score = 24.9 bits (53), Expect = 4.6
 Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 89  PNHSIIV---TGYWLDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFIVR 137
           P H+++      Y    + I   +   ++   + +  DI    ++A   +  
Sbjct: 166 PLHTVLKLTPVAYGCKVESIFLNVAAVNTHRDRPQNVDISRPSEEALVTVPA 217


>d2nn6g2 b.84.4.2 (G:16-106) Ribosomal RNA-processing protein 40,
           RRP40 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 24.7 bits (53), Expect = 5.3
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 86  YRTPNHSIIVTGYWLDNKQ 104
           ++ P        YW+D++Q
Sbjct: 72  HKEPGSGSGGGVYWVDSQQ 90


>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
           {Serratia marcescens [TaxId: 615]}
          Length = 356

 Score = 24.3 bits (52), Expect = 5.6
 Identities = 12/78 (15%), Positives = 24/78 (30%)

Query: 95  VTGYWLDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFIVRAEVSINYRTLVFSKILP 154
           V GY+      +       +S V     +I  +     T I  + + IN           
Sbjct: 5   VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPAT 64

Query: 155 DSLKGDIVLRKVYYYRQR 172
           +  K   V+ ++   +  
Sbjct: 65  NDAKARDVVNRLTALKAH 82


>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c
          oxidase subunit II {Rhodobacter sphaeroides [TaxId:
          1063]}
          Length = 100

 Score = 24.4 bits (53), Expect = 6.1
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 26 ILPILLLIYMAVYEITMLYTL 46
          I+PI++L+ +  + + +L+  
Sbjct: 77 IVPIVILVAIGAFSLPVLFNQ 97


>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase
           subunit II {Paracoccus denitrificans [TaxId: 266]}
          Length = 107

 Score = 24.1 bits (52), Expect = 7.2
 Identities = 4/20 (20%), Positives = 14/20 (70%)

Query: 25  IILPILLLIYMAVYEITMLY 44
            ++P+L+L+ +  + + +L+
Sbjct: 82  TLVPVLILVAIGAFSLPILF 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 688,435
Number of extensions: 29698
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 12
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.3 bits)