BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780571|ref|YP_003064984.1| hypothetical protein
CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62]
         (182 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 182

 Score =  377 bits (968), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 1   MKCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTRFASHMGDM 60
           MKCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTRFASHMGDM
Sbjct: 1   MKCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTRFASHMGDM 60

Query: 61  VAQETSINKQYLQGFENFLRATMYPYRTPNHSIIVTGYWLDNKQIVRKMWNWSSSNVKVE 120
           VAQETSINKQYLQGFENFLRATMYPYRTPNHSIIVTGYWLDNKQIVRKMWNWSSSNVKVE
Sbjct: 61  VAQETSINKQYLQGFENFLRATMYPYRTPNHSIIVTGYWLDNKQIVRKMWNWSSSNVKVE 120

Query: 121 REDIPASIKDASTFIVRAEVSINYRTLVFSKILPDSLKGDIVLRKVYYYRQRLGDQIVCR 180
           REDIPASIKDASTFIVRAEVSINYRTLVFSKILPDSLKGDIVLRKVYYYRQRLGDQIVCR
Sbjct: 121 REDIPASIKDASTFIVRAEVSINYRTLVFSKILPDSLKGDIVLRKVYYYRQRLGDQIVCR 180

Query: 181 DC 182
           DC
Sbjct: 181 DC 182


>gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62]
          Length = 473

 Score = 25.0 bits (53), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 100 LDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFIVRAEVSINYRTLVFSKILPDSLKG 159
           +D K+I R+M   + +NV  E ++  + I D        +V+++Y   V + IL D  K 
Sbjct: 141 VDEKEIDRQMAEIAKNNVAFEVKETESEIGD--------KVTVDYTVSVDNVILEDQSKK 192

Query: 160 DI 161
           ++
Sbjct: 193 NV 194


>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 62

 Score = 24.6 bits (52), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 9/52 (17%)

Query: 1  MKCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTR 52
          M  +KN    FL  E+G  A+E       LL+  +AV  IT + TL  +L +
Sbjct: 3  MHIVKN----FLQDESGATAIEYG-----LLVSLIAVVIITSVTTLGGKLKK 45


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 23.1 bits (48), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 15  ENGVVAVEMAIILPILLL 32
           EN V+ +E+A+ LP+ LL
Sbjct: 796 ENAVLLMELAVELPVSLL 813


>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 58

 Score = 22.3 bits (46), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)

Query: 1  MKCIKNYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLT 51
          M  +KN    FL  E+G  A+E       LL   +AV  I  + TL  +LT
Sbjct: 3  MHIVKN----FLQDESGATAIEYG-----LLASLIAVAIIASVTTLGGKLT 44


>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score = 22.3 bits (46), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 6  NYILRFLSRENGVVAVEMAIILPILLLIYMAVYEITMLYTLSKRLTR 52
          N +  FL  E+G  A+E       LL   +AV  I  + TL  +L++
Sbjct: 4  NIVKDFLKDESGATAIEYG-----LLASLIAVAIIASVTTLGGKLSK 45


>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 481

 Score = 21.9 bits (45), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 82  TMYPYRTPNHSIIVTGYWLDNKQIVR--KMWNWSSSNVKVEREDIPASIKDASTFIVRAE 139
            + P +TP  S+IV G      +     K  +   S ++V+   +P    + S F+ R+ 
Sbjct: 181 ALKPSKTPK-SLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239

Query: 140 VSINYRTLVFSKILPDSLKGDIV 162
                + L  SKI     KGD+V
Sbjct: 240 QKRGIKILTESKISSVKQKGDMV 262


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.138    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,189
Number of Sequences: 1233
Number of extensions: 4049
Number of successful extensions: 17
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 8
length of query: 182
length of database: 328,796
effective HSP length: 69
effective length of query: 113
effective length of database: 243,719
effective search space: 27540247
effective search space used: 27540247
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 35 (18.1 bits)