RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62] (192 letters) >3l2t_A Integrase, IN, P42IN; protein-DNA complex; HET: RLT; 2.85A {Human spumaretrovirus} PDB: 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* (A:55-112) Length = 58 Score = 31.7 bits (72), Expect = 0.060 Identities = 6/30 (20%), Positives = 11/30 (36%) Query: 140 HPGGPSTYNVLRAYYHWPLFTDLMRQYISS 169 H G +T + Y WP + + + Sbjct: 15 HTGREATLLKIANLYWWPNMRKDVVKQLGR 44 >1ypy_A Virion membrane protein; orthopox, variola virus, smallpox, L1, viral protein; 1.51A {Vaccinia virus} PDB: 2i9l_I (A:1-174) Length = 174 Score = 26.3 bits (58), Expect = 2.5 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 15/80 (18%) Query: 53 SAAYDVARKIRTGEISSKNTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKS 112 +A+ I G + H CN L V CS + D LD + + Sbjct: 26 NASAQTKCDIEIGNFYIRQNHG--------CN-LTVKNMCSADA-----DAQLDA-VLSA 70 Query: 113 LQEITETVPRKDKSDSSSEI 132 E + + K+ + Sbjct: 71 ATETYSGLTPEQKAYVPAMF 90 >3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease, magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A (A:) Length = 210 Score = 25.8 bits (55), Expect = 4.0 Identities = 4/18 (22%), Positives = 5/18 (27%) Query: 140 HPGGPSTYNVLRAYYHWP 157 H S L + P Sbjct: 13 HEKYHSNVKELSHKFGIP 30 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.139 0.403 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,425,748 Number of extensions: 60599 Number of successful extensions: 133 Number of sequences better than 10.0: 1 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 7 Length of query: 192 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 108 Effective length of database: 2,116,429 Effective search space: 228574332 Effective search space used: 228574332 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (24.0 bits)