RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780572|ref|YP_003064985.1| hypothetical protein
CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>3l2t_A Integrase, IN, P42IN; protein-DNA complex; HET: RLT; 2.85A
           {Human spumaretrovirus} PDB: 3l2q_A 3l2s_A 3l2r_A*
           3l2u_A* 3l2v_A* 3l2w_A* (A:55-112)
          Length = 58

 Score = 31.7 bits (72), Expect = 0.060
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 140 HPGGPSTYNVLRAYYHWPLFTDLMRQYISS 169
           H G  +T   +   Y WP     + + +  
Sbjct: 15  HTGREATLLKIANLYWWPNMRKDVVKQLGR 44


>1ypy_A Virion membrane protein; orthopox, variola virus, smallpox,
           L1, viral protein; 1.51A {Vaccinia virus} PDB: 2i9l_I
           (A:1-174)
          Length = 174

 Score = 26.3 bits (58), Expect = 2.5
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 15/80 (18%)

Query: 53  SAAYDVARKIRTGEISSKNTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKS 112
           +A+      I  G    +  H         CN L V   CS +      D  LD   + +
Sbjct: 26  NASAQTKCDIEIGNFYIRQNHG--------CN-LTVKNMCSADA-----DAQLDA-VLSA 70

Query: 113 LQEITETVPRKDKSDSSSEI 132
             E    +  + K+   +  
Sbjct: 71  ATETYSGLTPEQKAYVPAMF 90


>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration,
           endonuclease, magnesium, metal-binding, multifunctional
           enzyme; 3.20A {Human immunodeficiency virus type 2} PDB:
           1e0e_A (A:)
          Length = 210

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 4/18 (22%), Positives = 5/18 (27%)

Query: 140 HPGGPSTYNVLRAYYHWP 157
           H    S    L   +  P
Sbjct: 13  HEKYHSNVKELSHKFGIP 30


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,425,748
Number of extensions: 60599
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 7
Length of query: 192
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 108
Effective length of database: 2,116,429
Effective search space: 228574332
Effective search space used: 228574332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)