RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62] (192 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 50.3 bits (120), Expect = 3e-07 Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 73/170 (42%) Query: 11 RSILIREGAVAIEFAILVMPYFMLVFAILEISLSFTAGQL---F--------ESAAYD-- 57 R + + G+ +E +LV P + F A QL F E A D Sbjct: 7 RPLTLSHGS--LEHVLLV-P----------TASFFIASQLQEQFNKILPEPTEGFAADDE 53 Query: 58 -------VARKIRTGEISSK-NTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQ 109 V + + G +SS + +F +V L + EN YL+ Sbjct: 54 PTTPAELVGKFL--GYVSSLVEPSKVGQFDQV----LNLCLTEFENC-------YLEGND 100 Query: 110 I----KSLQEITETVPRKDKSDSSSEIDDRNFSFHPGGPSTYNVLRAYYH 155 I L + +T K K +++ Y Sbjct: 101 IHALAAKLLQENDTTLVKTKE----------------------LIKNYIT 128 Score = 37.2 bits (86), Expect = 0.003 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 43/133 (32%) Query: 30 PYFMLVFAILEISLSFTAGQLFESAA----YDVARKIRTGEISSKNTHSLTEFRR--VFC 83 F F L ++ F + L A+ D+ + ++K + + V+ Sbjct: 414 LKFSNRF--LPVASPFHS-HLLVPASDLINKDLVKNNV--SFNAK---DI----QIPVYD 461 Query: 84 ----NDLRVLFNCSENEIGRPYDLYLDVKQIKSLQEITETV--PRKDKSDSSSEIDDRNF 137 +DLR S + R + V I I V + ++ +D Sbjct: 462 TFDGSDLR---VLSGSISER-----I-VDCI-----IRLPVKWETTTQFKATHILD---- 503 Query: 138 SFHPGGPSTYNVL 150 F PGG S VL Sbjct: 504 -FGPGGASGLGVL 515 >3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3oyf_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* 3oyh_A* ... Length = 395 Score = 32.0 bits (72), Expect = 0.089 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%) Query: 140 HPGGPSTYNVLRAYYHWP-LFTDLMRQYISS 169 H G +T + Y WP + D + + + Sbjct: 69 HTGREATLLKIANLYWWPNMRKD-VVKQLGR 98 >3l2t_A Integrase, IN, P42IN; protein-DNA complex; HET: RLT; 2.85A {Human spumaretrovirus} PDB: 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* Length = 395 Score = 31.4 bits (70), Expect = 0.13 Identities = 6/30 (20%), Positives = 11/30 (36%) Query: 140 HPGGPSTYNVLRAYYHWPLFTDLMRQYISS 169 H G +T + Y WP + + + Sbjct: 69 HTGREATLLKIANLYWWPNMRKDVVKQLGR 98 >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Length = 1706 Score = 30.6 bits (69), Expect = 0.21 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 16/73 (21%) Query: 60 RKIRTGEISSKNTHSLTEFRRVFCNDLR----VLFNCSENEI-GRPYDLY----LDVKQI 110 RK+ G + NT + F N +R V+F E G Y LD+++I Sbjct: 500 RKL-AGNLKQSNTLLI------FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 552 Query: 111 KSLQEITETVPRK 123 +++E V + Sbjct: 553 GAVKEGENVVGSE 565 Score = 28.3 bits (63), Expect = 1.0 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 16/73 (21%) Query: 60 RKIRTGEISSKNTHSLTEFRRVFCNDLR----VLFNCSENEI-GRPYDLY----LDVKQI 110 RK+ G + NT + F N +R V+F E G Y LD+++I Sbjct: 1199 RKL-AGNLKQSNTLLI------FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 1251 Query: 111 KSLQEITETVPRK 123 +++E V + Sbjct: 1252 GAVKEGENVVGSE 1264 >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Score = 28.5 bits (63), Expect = 1.1 Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 19/89 (21%) Query: 22 IEFAILVMPYFMLVFAILEISLSFTAGQLFESAAYDVARKIR------------------ 63 +E + Y+ + +++ + AA KIR Sbjct: 103 LEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH 162 Query: 64 -TGEISSKNTHSLTEFRRVFCNDLRVLFN 91 GE++++ T +++ + + + F Sbjct: 163 DVGELNTRLTDDVSKINEGIGDKIGMFFQ 191 >3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Score = 25.7 bits (56), Expect = 6.8 Identities = 4/15 (26%), Positives = 10/15 (66%) Query: 55 AYDVARKIRTGEISS 69 A+++ ++ GE+S Sbjct: 3 AHEIRARVARGEVSP 17 >3nnq_A Integrase P46, N-terminal domain of moloney murine leukemia VIRU integrase; retroviral integrase, Zn finger; 2.69A {Moloney murine leukemia virus} Length = 114 Score = 25.5 bits (55), Expect = 8.3 Identities = 1/30 (3%), Positives = 7/30 (23%) Query: 140 HPGGPSTYNVLRAYYHWPLFTDLMRQYISS 169 + + Y+ ++ + Sbjct: 65 FSKMKALLERSHSPYYMLNRDRTLKNITET 94 >1d2z_B Death domain of tube; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 Length = 153 Score = 25.3 bits (55), Expect = 9.5 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 15/83 (18%) Query: 67 ISSKNTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKSLQEITETVPRKDKS 126 +SSK + + TE RRV ND+ L LD +++ +P+ Sbjct: 1 LSSKYSRN-TELRRVEDNDIYRLAK------------ILDENS--CWRKLMSIIPKGMDV 45 Query: 127 DSSSEIDDRNFSFHPGGPSTYNV 149 + S NF Y Sbjct: 46 QACSGAGCLNFPAEIKKGFKYTA 68 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.139 0.403 Gapped Lambda K H 0.267 0.0537 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,622,601 Number of extensions: 70850 Number of successful extensions: 156 Number of sequences better than 10.0: 1 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 13 Length of query: 192 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 105 Effective length of database: 3,584,002 Effective search space: 376320210 Effective search space used: 376320210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 54 (25.0 bits)