BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780572|ref|YP_003064985.1| hypothetical protein
CLIBASIA_02295 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780572|ref|YP_003064985.1| hypothetical protein CLIBASIA_02295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score =  397 bits (1020), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MRKKLLQGIRRSILIREGAVAIEFAILVMPYFMLVFAILEISLSFTAGQLFESAAYDVAR 60
           MRKKLLQGIRRSILIREGAVAIEFAILVMPYFMLVFAILEISLSFTAGQLFESAAYDVAR
Sbjct: 1   MRKKLLQGIRRSILIREGAVAIEFAILVMPYFMLVFAILEISLSFTAGQLFESAAYDVAR 60

Query: 61  KIRTGEISSKNTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKSLQEITETV 120
           KIRTGEISSKNTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKSLQEITETV
Sbjct: 61  KIRTGEISSKNTHSLTEFRRVFCNDLRVLFNCSENEIGRPYDLYLDVKQIKSLQEITETV 120

Query: 121 PRKDKSDSSSEIDDRNFSFHPGGPSTYNVLRAYYHWPLFTDLMRQYISSVKHPGKKGDFL 180
           PRKDKSDSSSEIDDRNFSFHPGGPSTYNVLRAYYHWPLFTDLMRQYISSVKHPGKKGDFL
Sbjct: 121 PRKDKSDSSSEIDDRNFSFHPGGPSTYNVLRAYYHWPLFTDLMRQYISSVKHPGKKGDFL 180

Query: 181 LSSIVVFKNEPF 192
           LSSIVVFKNEPF
Sbjct: 181 LSSIVVFKNEPF 192


>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 616

 Score = 32.3 bits (72), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 29  MPYFMLVFAILEISLSFTAGQ-LFESAAYDVARKIRTGEISSKNTHSLTEFRRVFCNDLR 87
           MP    V+ +L+I     AG+ L+   AY++ ++I++   S+ +TH +T       N++R
Sbjct: 6   MPECPGVYQMLDI-----AGRVLYVGKAYNLQKRIKSYMHSNNHTHRITHMISQI-NNIR 59

Query: 88  VLFNCSENEIGRPYDLYLDVKQIKSLQEITETVPRKDKS 126
               C+E E      L L+   IK L+     + R DKS
Sbjct: 60  FTVTCTEVEA-----LLLEANMIKRLKPRFNILLRDDKS 93


>gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 24.3 bits (51), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 148 NVLRAYYHWPLFTDLMRQYISSVKHPGKKGDFLLS 182
           ++ R  YHW +  +   Q I +  + GK G+  L+
Sbjct: 260 HIPRVLYHWRMHDNSTAQKIGNKNYAGKAGERALN 294


>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 864

 Score = 23.1 bits (48), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 9/46 (19%)

Query: 95  NEIGRPYDLYLDVKQIKSLQEITETVPRKDKSDSS--SEIDDRNFS 138
           N+IGR  D Y  +K +K+        PR D S  +   ++DD +F+
Sbjct: 498 NQIGRMTDTYASLKDLKA-------DPRLDPSIKAFFKQLDDTDFT 536


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 22.7 bits (47), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 59  ARKIRTGEISSKNTHSLTEFRRVFCNDLRVLFNCSENEIG 98
            +K R G +   +++S  +    +C D+  L    E   G
Sbjct: 352 GKKERVGRMLQMHSNSREDIDEAYCGDIIALAGLKETTTG 391


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.139    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,160
Number of Sequences: 1233
Number of extensions: 4333
Number of successful extensions: 10
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 192
length of database: 328,796
effective HSP length: 69
effective length of query: 123
effective length of database: 243,719
effective search space: 29977437
effective search space used: 29977437
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 36 (18.5 bits)