HHsearch alignment for GI: 254780573 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=99.29 E-value=3.9e-10 Score=92.76 Aligned_cols=272 Identities=20% Similarity=0.199 Sum_probs=147.2
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH--H----HH-HHHHHCCCC-------CCC
Q ss_conf 999616788884441112799999999999997079984579960552338--8----89-999870898-------644
Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD--K----II-ERARQEHPS-------IPI 92 (461)
Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD--k----ii-~~a~~~~~~-------~~~ 92 (461)
T Consensus 21 ~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~--~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 21 YVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDE--VRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 8983476898873214289898999999999974886--57999814875101279999986899987099643489976
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH----------------HHHHHHHHHHHHHHCCCCCCCCCCEE-EC
Q ss_conf 88489999999999999877626854100012356----------------77778999998741143201289287-52
Q gi|254780573|r 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN----------------HIPQMIYLIQNIILHGHAYEANNEII-FD 155 (461)
Q Consensus 93 ~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~----------------~i~~~i~~i~~L~~~g~aY~~~g~Vy-Fd 155 (461)
T Consensus 99 G-~~~Sya~hf~~~f~~~l~~~Gi~~-E~-~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~e~~~P~~ 171 (521)
T COG1384 99 G-CCDSYAEHFLRPFEEFLDEFGIEV-EF-VSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELEEDWSPFM 171 (521)
T ss_pred C-CCCHHHHHHHHHHHHHHHHCCCCE-EE-EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCEECC
T ss_conf 6-533599999999999998649864-99-876775644558999999986579999999985187----6667723022
Q ss_pred CHHCCCCCCCCCCCHHHHHHHHHCCC--CCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 20024543224675466664321022--2210123512666337766631414677667643320477778752984148
Q gi|254780573|r 156 TSSIPNYGSFSRRKIDEQKMGTRVPE--KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 (461)
Q Consensus 156 v~~~~~YG~Ls~~~~~~~~~g~r~~~--~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DI 233 (461)
T Consensus 172 pi-C~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir----~g~~KL~WRvdWp------------~RW~~lg--Vd~ 232 (521)
T COG1384 172 PI-CEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR----GGEGKLPWRVDWP------------MRWAALG--VDF 232 (521)
T ss_pred CC-CCCCCCCCEEEEEEECCCCEEEEEECCCCCCEEECC----CCCCCCCCCCCCC------------CHHHCCC--CCC
T ss_conf 25-655587030688996378449998668861046223----3676443576750------------0100008--310
Q ss_pred EEECCCCCCCCCH----HHHHHHHHHCCCCCCHHHEECCCEEEEEE-CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 7413566668751----36688886408753012100343257642-022332332140899850253345577799999
Q gi|254780573|r 234 HGGGLDLIFPHHE----NEIAQSCCADRIEKTANIWIHNGFLNLEG-RKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 (461)
Q Consensus 234 H~GG~DL~FPHHE----NEiAQs~a~~~~~~~a~yWlH~G~l~i~g-eKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR 308 (461)
T Consensus 233 EPfGKDH~a~ggSydtg~~I~--~ei~g~~pP~~~~Y--E~i~lkg~~~mSsSkG~~i~~~dwle-------v~~pE~lr 301 (521)
T COG1384 233 EPFGKDHAAAGGSYDTGKRIA--REIFGYEPPVPFVY--EWILLKGGGKMSSSKGNVISLSDWLE-------VAPPEVLR 301 (521)
T ss_pred CCCCCCCCCCCCCHHHHHHHH--HHHCCCCCCCCCCE--EEEEECCCCCCCCCCCCEECHHHHHH-------HCCHHHEE
T ss_conf 357853134567637899999--98649999977755--88985488665568785785999987-------53984733
Q ss_pred HHHHCCCCCCCCCCCHHH-HHHHHHHHHHC
Q ss_conf 998425664321145034-68777643210
Q gi|254780573|r 309 LAMLMTHYREPIDFTVQR-LTEAEILLSKW 337 (461)
Q Consensus 309 ~~lLsshYRspLdfS~e~-L~~A~~~l~kl 337 (461)
T Consensus 302 y~~~r~kP~r~~~~d~~~~il~lvDEydr~ 331 (521)
T COG1384 302 YLIARTKPNRHIDFDFDLGILKLVDEYDRL 331 (521)
T ss_pred EEEEECCCCCCEECCCCCCHHHHHHHHHHH
T ss_conf 235405887443317887744778999999