HHsearch alignment for GI: 254780573 and conserved domain: COG1384

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=99.29  E-value=3.9e-10  Score=92.76  Aligned_cols=272  Identities=20%  Similarity=0.199  Sum_probs=147.2

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH--H----HH-HHHHHCCCC-------CCC
Q ss_conf             999616788884441112799999999999997079984579960552338--8----89-999870898-------644
Q gi|254780573|r   27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD--K----II-ERARQEHPS-------IPI   92 (461)
Q Consensus        27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD--k----ii-~~a~~~~~~-------~~~   92 (461)
T Consensus        21 ~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~--~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~   98 (521)
T COG1384          21 YVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDE--VRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF   98 (521)
T ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf             8983476898873214289898999999999974886--57999814875101279999986899987099643489976


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH----------------HHHHHHHHHHHHHHCCCCCCCCCCEE-EC
Q ss_conf             88489999999999999877626854100012356----------------77778999998741143201289287-52
Q gi|254780573|r   93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN----------------HIPQMIYLIQNIILHGHAYEANNEII-FD  155 (461)
Q Consensus        93 ~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~----------------~i~~~i~~i~~L~~~g~aY~~~g~Vy-Fd  155 (461)
T Consensus        99 G-~~~Sya~hf~~~f~~~l~~~Gi~~-E~-~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~e~~~P~~  171 (521)
T COG1384          99 G-CCDSYAEHFLRPFEEFLDEFGIEV-EF-VSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELEEDWSPFM  171 (521)
T ss_pred             C-CCCHHHHHHHHHHHHHHHHCCCCE-EE-EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCEECC
T ss_conf             6-533599999999999998649864-99-876775644558999999986579999999985187----6667723022


Q ss_pred             CHHCCCCCCCCCCCHHHHHHHHHCCC--CCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             20024543224675466664321022--2210123512666337766631414677667643320477778752984148
Q gi|254780573|r  156 TSSIPNYGSFSRRKIDEQKMGTRVPE--KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI  233 (461)
Q Consensus       156 v~~~~~YG~Ls~~~~~~~~~g~r~~~--~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DI  233 (461)
T Consensus       172 pi-C~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir----~g~~KL~WRvdWp------------~RW~~lg--Vd~  232 (521)
T COG1384         172 PI-CEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR----GGEGKLPWRVDWP------------MRWAALG--VDF  232 (521)
T ss_pred             CC-CCCCCCCCEEEEEEECCCCEEEEEECCCCCCEEECC----CCCCCCCCCCCCC------------CHHHCCC--CCC
T ss_conf             25-655587030688996378449998668861046223----3676443576750------------0100008--310


Q ss_pred             EEECCCCCCCCCH----HHHHHHHHHCCCCCCHHHEECCCEEEEEE-CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             7413566668751----36688886408753012100343257642-022332332140899850253345577799999
Q gi|254780573|r  234 HGGGLDLIFPHHE----NEIAQSCCADRIEKTANIWIHNGFLNLEG-RKMSKSNGNFITINELLETKKFGGRSWPAPVIR  308 (461)
Q Consensus       234 H~GG~DL~FPHHE----NEiAQs~a~~~~~~~a~yWlH~G~l~i~g-eKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR  308 (461)
T Consensus       233 EPfGKDH~a~ggSydtg~~I~--~ei~g~~pP~~~~Y--E~i~lkg~~~mSsSkG~~i~~~dwle-------v~~pE~lr  301 (521)
T COG1384         233 EPFGKDHAAAGGSYDTGKRIA--REIFGYEPPVPFVY--EWILLKGGGKMSSSKGNVISLSDWLE-------VAPPEVLR  301 (521)
T ss_pred             CCCCCCCCCCCCCHHHHHHHH--HHHCCCCCCCCCCE--EEEEECCCCCCCCCCCCEECHHHHHH-------HCCHHHEE
T ss_conf             357853134567637899999--98649999977755--88985488665568785785999987-------53984733


Q ss_pred             HHHHCCCCCCCCCCCHHH-HHHHHHHHHHC
Q ss_conf             998425664321145034-68777643210
Q gi|254780573|r  309 LAMLMTHYREPIDFTVQR-LTEAEILLSKW  337 (461)
Q Consensus       309 ~~lLsshYRspLdfS~e~-L~~A~~~l~kl  337 (461)
T Consensus       302 y~~~r~kP~r~~~~d~~~~il~lvDEydr~  331 (521)
T COG1384         302 YLIARTKPNRHIDFDFDLGILKLVDEYDRL  331 (521)
T ss_pred             EEEEECCCCCCEECCCCCCHHHHHHHHHHH
T ss_conf             235405887443317887744778999999