HHsearch alignment for GI: 254780573 and conserved domain: PRK00260
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=100.00 E-value=0 Score=1306.15 Aligned_cols=436 Identities=48% Similarity=0.842 Sum_probs=411.2
Q ss_pred CCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 87418988898262233047984799961678888444111279999999999999707998457996055233888999
Q gi|254780573|r 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIER 82 (461)
Q Consensus 3 ~~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~ 82 (461)
T Consensus 1 M~l~lyntltr~ke~f~p~~~~~v~~Y~CGPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~--v~~v~NiTDidDKii~~ 78 (460)
T PRK00260 1 MMLKIYNTLTRQKEEFKPLDPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYRGYK--VTYVRNITDIDDKIIKR 78 (460)
T ss_pred CEEEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHH
T ss_conf 9178986688861012248999588996798488873200030899999999999964993--49998237541999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCC
Q ss_conf 98708986448848999999999999987762685410001235677778999998741143201289287522002454
Q gi|254780573|r 83 ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNY 162 (461)
Q Consensus 83 a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~Y 162 (461)
T Consensus 79 a~~~~~~------~~~~~~~~~~~f~~d~~~L~i~~p~~~~r~t~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~~~~~Y 152 (460)
T PRK00260 79 ANEEGES------IKELTERYIAAFHEDMDALGVLRPDIEPRATEHIPEIIELIERLIEKGHAYEADGDVYFDVRKFPDY 152 (460)
T ss_pred HHHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCH
T ss_conf 9981969------9999999999999999994899985224301479999999999985795288478799635555330
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 32246754666643210222210123512666337766631414677667643320477778752984148741356666
Q gi|254780573|r 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 (461)
Q Consensus 163 G~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F 242 (461)
T Consensus 153 G~Ls~~~~~~~~~g~rv~~~~~K~~p~DFaLWK~~~~ge~~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIH~GG~DL~F 232 (460)
T PRK00260 153 GKLSGRNLDDLQAGARVEVAEEKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF 232 (460)
T ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 30056530212115656766344785532212788888877769888879874226379999875997547624526778
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 87513668888640875301210034325764202233233214089985025334557779999999842566432114
Q gi|254780573|r 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 (461)
Q Consensus 243 PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdf 322 (461)
T Consensus 233 PHHENEiAQs~a~~~-~~~a~yW~H~g~l~i~g~KMSKSlgN~iti~dll~-------~y~~~~lR~~lLs~hYR~pl~f 304 (460)
T PRK00260 233 PHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-------KYDPEVLRFFLLSAHYRSPLNF 304 (460)
T ss_pred CCCCCHHHHHHHHHC-CCCCCEEEEEEEEEECCEEEECCCCCCCCHHHHHH-------HHCHHHHHHHHHHCCCCCCCCC
T ss_conf 996109999988648-98652456510576367175035787001999998-------7077999999985468996677
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC---------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH---------HHHHH
Q ss_conf 50346877764321000013510---------0596776302110127999999999999751306---------79999
Q gi|254780573|r 323 TVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH---------DLLPI 384 (461)
Q Consensus 323 S~e~L~~A~~~l~kl~~~~~~~~---------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~---------~~~~~ 384 (461)
T Consensus 305 s~e~L~~a~~~l~rl~~~~~~~~~~~~~~~~~~~~~~F~~AL~DDLNTP~Ala~Lfelvk~iN~~l~~~~~~~~~~~~~~ 384 (460)
T PRK00260 305 SEEALEEAKKALERLYNALRNLEPAVAPAGGEEFEERFIEAMDDDFNTPEALAVLFELAKEINRLLDAKDKEAAAALAAL 384 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999999999755402553227899999998752278699999999999999987502578999999999
Q ss_pred HHHHHHHCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEE
Q ss_conf 999998717674320------00146789999999999999881798999999999998897999869988778604887
Q gi|254780573|r 385 FNASAHILGIEVCKE------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 (461)
Q Consensus 385 ~~~~~~iLGl~~~~~------~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~Wk 458 (461)
T Consensus 385 l~~i~~ILGl~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~IeDt~dG------t~Wk 458 (460)
T PRK00260 385 LRALADVLGLLQQDPEAFLQAAADELLDAEIEALIEERQEARKAKDFALADRIRDELKAAGIVLEDTPDG------TTWR 458 (460)
T ss_pred HHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------CEEE
T ss_conf 9999985548976635553146443479999999999999998379799999999999779699984998------1797
Q ss_pred EC
Q ss_conf 24
Q gi|254780573|r 459 QK 460 (461)
Q Consensus 459 ~k 460 (461)
T Consensus 459 rK 460 (460)
T PRK00260 459 RK 460 (460)
T ss_pred EC
T ss_conf 59