HHsearch alignment for GI: 254780573 and conserved domain: PRK00260

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=100.00  E-value=0  Score=1306.15  Aligned_cols=436  Identities=48%  Similarity=0.842  Sum_probs=411.2

Q ss_pred             CCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf             87418988898262233047984799961678888444111279999999999999707998457996055233888999
Q gi|254780573|r    3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIER   82 (461)
Q Consensus         3 ~~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~   82 (461)
T Consensus         1 M~l~lyntltr~ke~f~p~~~~~v~~Y~CGPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~--v~~v~NiTDidDKii~~   78 (460)
T PRK00260          1 MMLKIYNTLTRQKEEFKPLDPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYRGYK--VTYVRNITDIDDKIIKR   78 (460)
T ss_pred             CEEEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHH
T ss_conf             9178986688861012248999588996798488873200030899999999999964993--49998237541999999


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCC
Q ss_conf             98708986448848999999999999987762685410001235677778999998741143201289287522002454
Q gi|254780573|r   83 ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNY  162 (461)
Q Consensus        83 a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~Y  162 (461)
T Consensus        79 a~~~~~~------~~~~~~~~~~~f~~d~~~L~i~~p~~~~r~t~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~~~~~Y  152 (460)
T PRK00260         79 ANEEGES------IKELTERYIAAFHEDMDALGVLRPDIEPRATEHIPEIIELIERLIEKGHAYEADGDVYFDVRKFPDY  152 (460)
T ss_pred             HHHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCH
T ss_conf             9981969------9999999999999999994899985224301479999999999985795288478799635555330


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             32246754666643210222210123512666337766631414677667643320477778752984148741356666
Q gi|254780573|r  163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF  242 (461)
Q Consensus       163 G~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F  242 (461)
T Consensus       153 G~Ls~~~~~~~~~g~rv~~~~~K~~p~DFaLWK~~~~ge~~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIH~GG~DL~F  232 (460)
T PRK00260        153 GKLSGRNLDDLQAGARVEVAEEKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF  232 (460)
T ss_pred             HHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             30056530212115656766344785532212788888877769888879874226379999875997547624526778


Q ss_pred             CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             87513668888640875301210034325764202233233214089985025334557779999999842566432114
Q gi|254780573|r  243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF  322 (461)
Q Consensus       243 PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdf  322 (461)
T Consensus       233 PHHENEiAQs~a~~~-~~~a~yW~H~g~l~i~g~KMSKSlgN~iti~dll~-------~y~~~~lR~~lLs~hYR~pl~f  304 (460)
T PRK00260        233 PHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-------KYDPEVLRFFLLSAHYRSPLNF  304 (460)
T ss_pred             CCCCCHHHHHHHHHC-CCCCCEEEEEEEEEECCEEEECCCCCCCCHHHHHH-------HHCHHHHHHHHHHCCCCCCCCC
T ss_conf             996109999988648-98652456510576367175035787001999998-------7077999999985468996677


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCC---------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH---------HHHHH
Q ss_conf             50346877764321000013510---------0596776302110127999999999999751306---------79999
Q gi|254780573|r  323 TVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH---------DLLPI  384 (461)
Q Consensus       323 S~e~L~~A~~~l~kl~~~~~~~~---------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~---------~~~~~  384 (461)
T Consensus       305 s~e~L~~a~~~l~rl~~~~~~~~~~~~~~~~~~~~~~F~~AL~DDLNTP~Ala~Lfelvk~iN~~l~~~~~~~~~~~~~~  384 (460)
T PRK00260        305 SEEALEEAKKALERLYNALRNLEPAVAPAGGEEFEERFIEAMDDDFNTPEALAVLFELAKEINRLLDAKDKEAAAALAAL  384 (460)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999999999999999755402553227899999998752278699999999999999987502578999999999


Q ss_pred             HHHHHHHCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEE
Q ss_conf             999998717674320------00146789999999999999881798999999999998897999869988778604887
Q gi|254780573|r  385 FNASAHILGIEVCKE------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK  458 (461)
Q Consensus       385 ~~~~~~iLGl~~~~~------~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~Wk  458 (461)
T Consensus       385 l~~i~~ILGl~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~IeDt~dG------t~Wk  458 (460)
T PRK00260        385 LRALADVLGLLQQDPEAFLQAAADELLDAEIEALIEERQEARKAKDFALADRIRDELKAAGIVLEDTPDG------TTWR  458 (460)
T ss_pred             HHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------CEEE
T ss_conf             9999985548976635553146443479999999999999998379799999999999779699984998------1797


Q ss_pred             EC
Q ss_conf             24
Q gi|254780573|r  459 QK  460 (461)
Q Consensus       459 ~k  460 (461)
T Consensus       459 rK  460 (460)
T PRK00260        459 RK  460 (460)
T ss_pred             EC
T ss_conf             59