HHsearch alignment for GI: 254780573 and conserved domain: PRK05347
>PRK05347 glutaminyl-tRNA synthetase; Provisional.
Probab=98.74 E-value=1.1e-06 Score=68.03 Aligned_cols=260 Identities=17% Similarity=0.161 Sum_probs=147.6
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998
Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461)
Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461)
T Consensus 34 FpPePnG~LHiGHaka~~lN~~~a~~--y-~G~----~~LRfDDTNP-------------------~~e~~e~~~~I~~d 87 (556)
T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQD--Y-GGK----CNLRFDDTNP-------------------EKEDQEYVDSIKED 87 (556)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH--C-CCE----EEEEECCCCC-------------------CCCCHHHHHHHHHH
T ss_conf 49899987618888999866999997--0-998----9998358998-------------------74548999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE-EECCHH--CCCCCCCC---CCC-------HHHHHHHH
Q ss_conf 776268541000123567777899999874114320128928-752200--24543224---675-------46666432
Q gi|254780573|r 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEI-IFDTSS--IPNYGSFS---RRK-------IDEQKMGT 177 (461)
Q Consensus 111 ~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~V-yFdv~~--~~~YG~Ls---~~~-------~~~~~~g~ 177 (461)
T Consensus 88 ~~wLg~~~~~~i~~~Sd~f~~~y~~a~~LI~~g~AYv~~~~~ee~~~~Rg~~~~~g~~sp~R~~~~eenl~lf~~M~~G~ 167 (556)
T PRK05347 88 VRWLGFDWGGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGE 167 (556)
T ss_pred HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98749988982788134299999999999864881356899999998747776688879655699899999999986688
Q ss_pred --------HCCCCCC--CCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
Q ss_conf --------1022221--012351266633776663141467766764332047777875298414874135666687513
Q gi|254780573|r 178 --------RVPEKYH--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 (461)
Q Consensus 178 --------r~~~~~~--K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN 247 (461)
T Consensus 168 ~~eg~~vlR~K~Dm~~~N~~mRDpv~yRi~~~~H~rtg~k~~-iyP~YDFa-~~i~D~~egiTHsl~t----~Ef~~~-r 240 (556)
T PRK05347 168 FPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWC-IYPMYDFA-HCISDAIEGITHSLCT----LEFEDH-R 240 (556)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEE-ECCCCCCC-CCHHHHHCCCCEEEEC----CCCCCC-H
T ss_conf 778628999985148999541245257842468888688226-61242124-2314565387424204----741005-4
Q ss_pred HHHHHHH--HCC-CCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCC--------------CCCCCCCHHHHHHH
Q ss_conf 6688886--408-753012100343257642022332332140899850253--------------34557779999999
Q gi|254780573|r 248 EIAQSCC--ADR-IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK--------------FGGRSWPAPVIRLA 310 (461)
Q Consensus 248 EiAQs~a--~~~-~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~--------------~~~k~y~p~viR~~ 310 (461)
T Consensus 241 ~~Y~w~~~~l~~~~~P--~-~~ef~Rln~~~tvlSKr-----kl~~lV~~g~v~GWDDPRlpTl~glrRRG~~peAi~~F 312 (556)
T PRK05347 241 PLYDWVLDNLPIPPHP--R-QYEFSRLNLTYTVMSKR-----KLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREF 312 (556)
T ss_pred HHHHHHHHHCCCCCCC--E-EEEEEEEEEEEEECCHH-----HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 6576603402788883--4-88863466520222088-----99999975976787787505668887569998999999
Q ss_pred HHCCCCCC-CCCCCHHHHHHHH
Q ss_conf 84256643-2114503468777
Q gi|254780573|r 311 MLMTHYRE-PIDFTVQRLTEAE 331 (461)
Q Consensus 311 lLsshYRs-pLdfS~e~L~~A~ 331 (461)
T Consensus 313 ~~~~Gvsk~~~~i~~~~l~~~~ 334 (556)
T PRK05347 313 CERIGVTKQDSVIDMSMLESCI 334 (556)
T ss_pred HHHHCCCCCCEEECHHHHHHHH
T ss_conf 9984854444053299999999