HHsearch alignment for GI: 254780573 and conserved domain: PRK05729
>PRK05729 valS valyl-tRNA synthetase; Reviewed.
Probab=99.84 E-value=2e-20 Score=166.30 Aligned_cols=133 Identities=26% Similarity=0.342 Sum_probs=92.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 14874135666687513668888640875301210034325-76420223323321408998502533455777999999
Q gi|254780573|r 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461)
Q Consensus 231 ~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461)
T Consensus 476 ~d~~~~G~Dii~fWv~rm~~~~~~~~~~~Pfk~v~~h-G~v~D~~G~KMSKS~GNvidP~~vi-------~~yGaDalR~ 547 (877)
T PRK05729 476 TSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDLI-------DKYGADALRF 547 (877)
T ss_pred CCCCCCCCCHHEEEEEEEECCEEEECCCCCCHHCCCC-CEEECCCCCCCCCCCCCCCCHHHHH-------HHCCHHHHHH
T ss_conf 7545206552113444443103201123761102004-4378898877878788989989999-------8719199999
Q ss_pred HHHC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCC------C---CC---------CCC-----------HHHHHHCCCHH
Q ss_conf 9842-56643211450346877764321000013------5---10---------059-----------67763021101
Q gi|254780573|r 310 AMLM-THYREPIDFTVQRLTEAEILLSKWPQTST------S---KG---------IID-----------PAVLSALYNDL 359 (461)
Q Consensus 310 ~lLs-shYRspLdfS~e~L~~A~~~l~kl~~~~~------~---~~---------~~~-----------~~f~~AL~DDL 359 (461)
T Consensus 548 ~l~~~~~~g~di~~~~~~v~~~r~f~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~~~~-~~y 626 (877)
T PRK05729 548 TLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVTEAL-DKY 626 (877)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCC
T ss_conf 9997077676600068999999999999999999999724656644456621067879999999999999998750-002
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2799999999999
Q gi|254780573|r 360 NTVSAIQALHKLA 372 (461)
Q Consensus 360 NTp~ALa~L~~lv 372 (461)
T Consensus 627 ~f~~a~~~ly~F~ 639 (877)
T PRK05729 627 RFDEAAQALYEFI 639 (877)
T ss_pred CHHHHHHHHHHHH
T ss_conf 0999999999984