HHsearch alignment for GI: 254780573 and conserved domain: PRK11893

>PRK11893 methionyl-tRNA synthetase; Reviewed.
Probab=100.00  E-value=2.8e-45  Score=343.54  Aligned_cols=328  Identities=21%  Similarity=0.207  Sum_probs=229.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             67888844411127999999999999970799845799605523388899998708986448848999999999999987
Q gi|254780573|r   32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT  111 (461)
Q Consensus        32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~  111 (461)
T Consensus         9 ~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~--v~~~~GtD~hg~~i~~~A~~~g~~------p~e~~~~~~~~~~~~~   80 (512)
T PRK11893          9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYD--VFFLTGTDEHGQKIERKAEEAGIS------PQELADRNSASFKRLW   80 (512)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH
T ss_conf             99889973446358799999999999955997--074687177519999999985999------9999999999999999


Q ss_pred             HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCH--HCCCCCCCCCCCHHH---HHHHHHCCCCCC
Q ss_conf             7626854100012356--777789999987411432012892875220--024543224675466---664321022221
Q gi|254780573|r  112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTS--SIPNYGSFSRRKIDE---QKMGTRVPEKYH  184 (461)
Q Consensus       112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--~~~~YG~Ls~~~~~~---~~~g~r~~~~~~  184 (461)
T Consensus        81 ~~l~i~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~  159 (512)
T PRK11893         81 EALNISY-DDFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVEE  159 (512)
T ss_pred             HHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             9809988-878779987999999999999976797743244432268864445777723665788655557997768724


Q ss_pred             C-----------------CCCCCEEEEECCC--------CCCCEEE----C-CCCCCCCC--CCCHH----------HHH
Q ss_conf             0-----------------1235126663377--------6663141----4-67766764--33204----------777
Q gi|254780573|r  185 K-----------------KNPADFILWKRST--------PMEPGWE----S-PWGRGRPG--WHIEC----------SAM  222 (461)
Q Consensus       185 K-----------------~~p~DFaLWK~~~--------~~e~~w~----s-pwG~GRPG--WHiEC----------sam  222 (461)
T Consensus       160 ~~~flkl~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~~~~~~~yvWfda~~~y~s~~  239 (512)
T PRK11893        160 ESYFFRLSKYQDKLLELYEANPDFIQPESRRNEVINFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALLNYLTAL  239 (512)
T ss_pred             CCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHH
T ss_conf             76112050546779999724986518699999999998577876615256787899888888862011253135567764


Q ss_pred             HHHHCC--------CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCC
Q ss_conf             787529--------841487413566668751366888864087530121003432576420223323321408998502
Q gi|254780573|r  223 SSHYLG--------KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET  294 (461)
Q Consensus       223 ~~~~lg--------~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~  294 (461)
T Consensus       240 ~~~~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~~~a~l~~~~~-~~p~~~~~h-g~l~~~G~KmSKS~Gn~I~~~d~l--  315 (512)
T PRK11893        240 GYDEPDLEELFRKYWPADVHLIGKDILRFHAVYWPAFLMAAGL-PLPKRVFAH-GFLTNDGQKMSKSLGNVIDPFDLV--  315 (512)
T ss_pred             CCCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCC-EEEEECCCEECCCCCCCCCHHHHH--
T ss_conf             5887656478984487504323665120138889999986699-988634311-148875715013478758999999--


Q ss_pred             CCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHH--HHHHCCCCCCC---------------C---CCCCH----
Q ss_conf             53345577799999998425-664321145034687776--43210000135---------------1---00596----
Q gi|254780573|r  295 KKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEAEI--LLSKWPQTSTS---------------K---GIIDP----  349 (461)
Q Consensus       295 ~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A~~--~l~kl~~~~~~---------------~---~~~~~----  349 (461)
T Consensus       316 -----~~yg~D~lR~~L~~~~p~~~D~~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~  390 (512)
T PRK11893        316 -----DKFGVDAVRYFLLREIPFGQDGDFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLE  390 (512)
T ss_pred             -----HHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             -----985950402877632887778787899999897589999999999999999987517878886658876899999


Q ss_pred             -------HHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             -------77630211012799999999999975130
Q gi|254780573|r  350 -------AVLSALYNDLNTVSAIQALHKLARESTKN  378 (461)
Q Consensus       350 -------~f~~AL~DDLNTp~ALa~L~~lvk~~n~~  378 (461)
T Consensus       391 ~~~~~~~~v~~~~-e~~~~~~a~~~i~~~~~~~N~y  425 (512)
T PRK11893        391 KADAALEQVREAM-DNFAFHKALEAILELAAEANKY  425 (512)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999-7125999999999999999999