HHsearch alignment for GI: 254780573 and conserved domain: PRK11893
>PRK11893 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=2.8e-45 Score=343.54 Aligned_cols=328 Identities=21% Similarity=0.207 Sum_probs=229.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987
Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461)
Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461)
T Consensus 9 ~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~--v~~~~GtD~hg~~i~~~A~~~g~~------p~e~~~~~~~~~~~~~ 80 (512)
T PRK11893 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYD--VFFLTGTDEHGQKIERKAEEAGIS------PQELADRNSASFKRLW 80 (512)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH
T ss_conf 99889973446358799999999999955997--074687177519999999985999------9999999999999999
Q ss_pred HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCH--HCCCCCCCCCCCHHH---HHHHHHCCCCCC
Q ss_conf 7626854100012356--777789999987411432012892875220--024543224675466---664321022221
Q gi|254780573|r 112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTS--SIPNYGSFSRRKIDE---QKMGTRVPEKYH 184 (461)
Q Consensus 112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--~~~~YG~Ls~~~~~~---~~~g~r~~~~~~ 184 (461)
T Consensus 81 ~~l~i~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~ 159 (512)
T PRK11893 81 EALNISY-DDFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVEE 159 (512)
T ss_pred HHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 9809988-878779987999999999999976797743244432268864445777723665788655557997768724
Q ss_pred C-----------------CCCCCEEEEECCC--------CCCCEEE----C-CCCCCCCC--CCCHH----------HHH
Q ss_conf 0-----------------1235126663377--------6663141----4-67766764--33204----------777
Q gi|254780573|r 185 K-----------------KNPADFILWKRST--------PMEPGWE----S-PWGRGRPG--WHIEC----------SAM 222 (461)
Q Consensus 185 K-----------------~~p~DFaLWK~~~--------~~e~~w~----s-pwG~GRPG--WHiEC----------sam 222 (461)
T Consensus 160 ~~~flkl~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~~~~~~~yvWfda~~~y~s~~ 239 (512)
T PRK11893 160 ESYFFRLSKYQDKLLELYEANPDFIQPESRRNEVINFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALLNYLTAL 239 (512)
T ss_pred CCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 76112050546779999724986518699999999998577876615256787899888888862011253135567764
Q ss_pred HHHHCC--------CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCC
Q ss_conf 787529--------841487413566668751366888864087530121003432576420223323321408998502
Q gi|254780573|r 223 SSHYLG--------KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 (461)
Q Consensus 223 ~~~~lg--------~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~ 294 (461)
T Consensus 240 ~~~~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~~~a~l~~~~~-~~p~~~~~h-g~l~~~G~KmSKS~Gn~I~~~d~l-- 315 (512)
T PRK11893 240 GYDEPDLEELFRKYWPADVHLIGKDILRFHAVYWPAFLMAAGL-PLPKRVFAH-GFLTNDGQKMSKSLGNVIDPFDLV-- 315 (512)
T ss_pred CCCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCC-EEEEECCCEECCCCCCCCCHHHHH--
T ss_conf 5887656478984487504323665120138889999986699-988634311-148875715013478758999999--
Q ss_pred CCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHH--HHHHCCCCCCC---------------C---CCCCH----
Q ss_conf 53345577799999998425-664321145034687776--43210000135---------------1---00596----
Q gi|254780573|r 295 KKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEAEI--LLSKWPQTSTS---------------K---GIIDP---- 349 (461)
Q Consensus 295 ~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A~~--~l~kl~~~~~~---------------~---~~~~~---- 349 (461)
T Consensus 316 -----~~yg~D~lR~~L~~~~p~~~D~~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~ 390 (512)
T PRK11893 316 -----DKFGVDAVRYFLLREIPFGQDGDFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLE 390 (512)
T ss_pred -----HHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf -----985950402877632887778787899999897589999999999999999987517878886658876899999
Q ss_pred -------HHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -------77630211012799999999999975130
Q gi|254780573|r 350 -------AVLSALYNDLNTVSAIQALHKLARESTKN 378 (461)
Q Consensus 350 -------~f~~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461)
T Consensus 391 ~~~~~~~~v~~~~-e~~~~~~a~~~i~~~~~~~N~y 425 (512)
T PRK11893 391 KADAALEQVREAM-DNFAFHKALEAILELAAEANKY 425 (512)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-7125999999999999999999