HHsearch alignment for GI: 254780573 and conserved domain: PRK12558
>PRK12558 glutamyl-tRNA synthetase; Provisional.
Probab=99.08 E-value=9.7e-08 Score=75.67 Aligned_cols=225 Identities=18% Similarity=0.251 Sum_probs=138.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987
Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461)
Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461)
T Consensus 8 APSPTG~lHiG~~rtAl~n~l~Ar---~~~G----~fiLRIEDtD~---~R~~----------------~~~~~~i~~~L 61 (461)
T PRK12558 8 APSPTGYIHIGNARTALFNWLFAR---AHGG----KFILRYDDTDV---ERSK----------------QEYADAIADDL 61 (461)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCC---CCCC----------------HHHHHHHHHHH
T ss_conf 989898532789999999999999---6199----89998776898---7688----------------79999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--------------HCCCCCC----CCCCCHHHH
Q ss_conf 7626854100012356777789999987411432012892875220--------------0245432----246754666
Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--------------SIPNYGS----FSRRKIDEQ 173 (461)
Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--------------~~~~YG~----Ls~~~~~~~ 173 (461)
T Consensus 62 ~WlGl~wDe-~~~QS~r~~~Y~~~~~~L~~~g~aY~C-----fct~eel~~~r~~~~~~~~~~~Y~~~~~~l~~~~~~~~ 135 (461)
T PRK12558 62 RWLGLDPDR-VEYQSKRFDRYAEAAEKLKAAGLLYAC-----YETAEELERRRKIQLARRLPPVYDRAALKLTDAEKAAL 135 (461)
T ss_pred HHCCCCCCC-CCHHHCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 987999998-741643999999999999986993653-----88889999999999966999887842022998888766
Q ss_pred HHHHHCC------------------------------CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHH
Q ss_conf 6432102------------------------------2221012351266633776663141467766764332047777
Q gi|254780573|r 174 KMGTRVP------------------------------EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 (461)
Q Consensus 174 ~~g~r~~------------------------------~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~ 223 (461)
T Consensus 136 ~~~g~~p~~r~~~~~~~~~~~~~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~r-------------sDG~ptY~l-A~VVD 201 (461)
T PRK12558 136 EAEGRKPHWRFLLPNFESDPFATQRTEVHWDDLVRGPQTVDLASLSDPVLVR-------------EDGTYLYTL-PSVVD 201 (461)
T ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEEE-------------CCCCCEEEE-EEEEC
T ss_conf 6247997799983542135567767727984014630673343458828993-------------489710345-57855
Q ss_pred HHHCCCCEEEEEECCCCCCCCCHH---HHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 875298414874135666687513---668888640875301210034325-7642022332332140899850253345
Q gi|254780573|r 224 SHYLGKVFDIHGGGLDLIFPHHEN---EIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGG 299 (461)
Q Consensus 224 ~~~lg~~~DIH~GG~DL~FPHHEN---EiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~ 299 (461)
T Consensus 202 D~~m~--IthviRg~d~l----~~t~~~~~l~~alg~~~p---~~~h~pli~~~~g~klskR~g~-~sv~~yr~------ 265 (461)
T PRK12558 202 DIDMG--VTHIIRGDDHV----TNTGVQIALFRALGAEPP---VFGHHNLLTTASGEGLSKRTGA-LSVGSLRE------ 265 (461)
T ss_pred CCCCC--CCEEEECHHHH----HHCHHHHHHHHHHCCCCC---EEEECCEEECCCCCCCCCCCCC-CCHHHHHH------
T ss_conf 75578--85446368588----615999999999579998---0897134568999816666897-58999998------
Q ss_pred CCCCHHHHHHHHHCCCCCC
Q ss_conf 5777999999984256643
Q gi|254780573|r 300 RSWPAPVIRLAMLMTHYRE 318 (461)
Q Consensus 300 k~y~p~viR~~lLsshYRs 318 (461)
T Consensus 266 ~GylPeAl~NyLalLGWs~ 284 (461)
T PRK12558 266 AGYEPMAVASLAVLLGTSE 284 (461)
T ss_pred CCCCCHHHHHHHHHHCCCC
T ss_conf 7998478999999847999