HHsearch alignment for GI: 254780573 and conserved domain: cd00802
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.44 E-value=7e-13 Score=112.40 Aligned_cols=137 Identities=28% Similarity=0.271 Sum_probs=106.8
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99616788884441112799999999999997079984579960552338889999870898644884899999999999
Q gi|254780573|r 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 (461)
Q Consensus 28 ~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f 107 (461)
T Consensus 2 i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~--~~~~~~idd~~~~~~~~a~~~~~~------~~~~~~~~~~~~ 68 (142)
T cd00802 2 ITRPGPYPTGPLHIGHARTALLNDVLARYG-----N--VLFILGIDDTGLPIEDKAEKEGKL------PKEEVEENIEEI 68 (142)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----C--CEEEEEECCCCCCCCCHHHHHCCC------CHHHHHHHHHHH
T ss_conf 141488989964188999999999999981-----9--989998657992001167884448------899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99877626854100012356777789999987411432012892875220024543224675466664321022221012
Q gi|254780573|r 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187 (461)
Q Consensus 108 ~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~ 187 (461)
T Consensus 69 ~~~~~---------------------------------y----------------------------------------- 74 (142)
T cd00802 69 KEDLK---------------------------------Y----------------------------------------- 74 (142)
T ss_pred HHHCE---------------------------------E-----------------------------------------
T ss_conf 98652---------------------------------6-----------------------------------------
Q ss_pred CCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCC---CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 35126663377666314146776676433204777787529---841487413566668751366888864087530121
Q gi|254780573|r 188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG---KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 (461)
Q Consensus 188 p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg---~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~y 264 (461)
T Consensus 75 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~G~D~~~-~~~~~~~~~~~l~~~~~-~~~ 124 (142)
T cd00802 75 ----------------------------WFDSAADDLLLLGYPFYPVDLVLGGKDQIP-HLELTRDLLKALGGKFP-PPE 124 (142)
T ss_pred ----------------------------CCCEEECHHHHCCCCCCCCCEEEECCCCCC-CCHHHHHHHHHHCCCCC-CCC
T ss_conf ----------------------------340164348754667887657886621014-76999999998377889-986
Q ss_pred EECCCEEEEEE-CCCCCC
Q ss_conf 00343257642-022332
Q gi|254780573|r 265 WIHNGFLNLEG-RKMSKS 281 (461)
Q Consensus 265 WlH~G~l~i~g-eKMSKS 281 (461)
T Consensus 125 ~~~~~~l~~~~g~KmSKS 142 (142)
T cd00802 125 VLHHGLLLGEDGKKMSKS 142 (142)
T ss_pred EEEEEEEECCCCCCCCCC
T ss_conf 786311488699867899