HHsearch alignment for GI: 254780573 and conserved domain: cd00802

>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.44  E-value=7e-13  Score=112.40  Aligned_cols=137  Identities=28%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99616788884441112799999999999997079984579960552338889999870898644884899999999999
Q gi|254780573|r   28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF  107 (461)
Q Consensus        28 ~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f  107 (461)
T Consensus         2 i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~--~~~~~~idd~~~~~~~~a~~~~~~------~~~~~~~~~~~~   68 (142)
T cd00802           2 ITRPGPYPTGPLHIGHARTALLNDVLARYG-----N--VLFILGIDDTGLPIEDKAEKEGKL------PKEEVEENIEEI   68 (142)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----C--CEEEEEECCCCCCCCCHHHHHCCC------CHHHHHHHHHHH
T ss_conf             141488989964188999999999999981-----9--989998657992001167884448------899999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             99877626854100012356777789999987411432012892875220024543224675466664321022221012
Q gi|254780573|r  108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN  187 (461)
Q Consensus       108 ~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~  187 (461)
T Consensus        69 ~~~~~---------------------------------y-----------------------------------------   74 (142)
T cd00802          69 KEDLK---------------------------------Y-----------------------------------------   74 (142)
T ss_pred             HHHCE---------------------------------E-----------------------------------------
T ss_conf             98652---------------------------------6-----------------------------------------


Q ss_pred             CCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCC---CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf             35126663377666314146776676433204777787529---841487413566668751366888864087530121
Q gi|254780573|r  188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG---KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI  264 (461)
Q Consensus       188 p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg---~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~y  264 (461)
T Consensus        75 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~G~D~~~-~~~~~~~~~~~l~~~~~-~~~  124 (142)
T cd00802          75 ----------------------------WFDSAADDLLLLGYPFYPVDLVLGGKDQIP-HLELTRDLLKALGGKFP-PPE  124 (142)
T ss_pred             ----------------------------CCCEEECHHHHCCCCCCCCCEEEECCCCCC-CCHHHHHHHHHHCCCCC-CCC
T ss_conf             ----------------------------340164348754667887657886621014-76999999998377889-986


Q ss_pred             EECCCEEEEEE-CCCCCC
Q ss_conf             00343257642-022332
Q gi|254780573|r  265 WIHNGFLNLEG-RKMSKS  281 (461)
Q Consensus       265 WlH~G~l~i~g-eKMSKS  281 (461)
T Consensus       125 ~~~~~~l~~~~g~KmSKS  142 (142)
T cd00802         125 VLHHGLLLGEDGKKMSKS  142 (142)
T ss_pred             EEEEEEEECCCCCCCCCC
T ss_conf             786311488699867899