HHsearch alignment for GI: 254780573 and conserved domain: cd00807
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.21 E-value=4.4e-10 Score=92.41 Aligned_cols=205 Identities=17% Similarity=0.158 Sum_probs=134.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987
Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461)
Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461)
T Consensus 7 APsPtG~lHiG~artal~n~l~Ar~---~~G----~~iLRiEDTD~---~r~~----------------~e~~~~I~~~L 60 (238)
T cd00807 7 PPEPNGYLHIGHAKAAILNFEYAKR---YGG----KLILRFDDTNP---KKED----------------EEAYDSILEDL 60 (238)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCCC----------------CHHHHHHHHHH
T ss_conf 8898986438999999999999998---299----69998677898---7676----------------16899999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 76268541000123567777899999874114320128928752200245432246754666643210222210123512
Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADF 191 (461)
Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DF 191 (461)
T Consensus 61 ~wLGl~~-De~~~QS~r~~~y~~~a~~Li~~G~AY~h-----~-----------------------r~g---~-----k~ 103 (238)
T cd00807 61 EWLGIKP-DEITYASDYFDLYYEYAEKLIKMGKAYVH-----P-----------------------RTG---D-----KY 103 (238)
T ss_pred HHHCCCC-CCCEECCCCHHHHHHHHHHHHHCCCCCCC-----C-----------------------CCC---C-----CC
T ss_conf 9848999-93156366799999999999987998745-----4-----------------------469---9-----75
Q ss_pred EEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEE
Q ss_conf 66633776663141467766764332047777875298414874135666687513668888640875301210034325
Q gi|254780573|r 192 ILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 (461)
Q Consensus 192 aLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l 271 (461)
T Consensus 104 ~------------------v~PtY~fa~vV-DD~~~g--ITHViRG~D~l-~nt~~q~~l~~aLg~~~P---~~~h~~~l 158 (238)
T cd00807 104 C------------------VYPTYDFAHPI-DDSLEG--ITHSLRTKEFQ-DRREKYDWLYEYLGWRKP---EQIEFGRL 158 (238)
T ss_pred E------------------ECCCCCCCEEE-CCCCCC--CCEEEECCCCC-CCCHHHHHHHHHCCCCCC---CEEEEEEE
T ss_conf 0------------------14553322162-164578--87688762101-387999999998499998---67887548
Q ss_pred EEEECCCCCCCCC---------------CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCHHHHHHH
Q ss_conf 7642022332332---------------1408998502533455777999999984256643-211450346877
Q gi|254780573|r 272 NLEGRKMSKSNGN---------------FITINELLETKKFGGRSWPAPVIRLAMLMTHYRE-PIDFTVQRLTEA 330 (461)
Q Consensus 272 ~i~geKMSKSlGN---------------~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRs-pLdfS~e~L~~A 330 (461)
T Consensus 159 ~~~~~klSKR~~~~~i~~g~v~gwdDprl~Tl~~~r------r~G~~peAi~n~l~~lG~s~~d~~~~~~~le~~ 227 (238)
T cd00807 159 NLEYTVLSKRKLKKLVEEGEVEGWDDPRLPTLRGLR------RRGITPEAIREFILEVGVSKADVTISWAKLEAI 227 (238)
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHH------HCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH
T ss_conf 799970546151540245863677675406599999------879989999999999789978867639999998