HHsearch alignment for GI: 254780573 and conserved domain: cd00814

>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00  E-value=0  Score=449.30  Aligned_cols=271  Identities=23%  Similarity=0.238  Sum_probs=209.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             67888844411127999999999999970799845799605523388899998708986448848999999999999987
Q gi|254780573|r   32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT  111 (461)
Q Consensus        32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~  111 (461)
T Consensus         8 ~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~--V~~vt~~Dd~~~kIi~kA~~~g~~------~~el~~~y~~~~~~~~   79 (319)
T cd00814           8 LPYVNGVPHLGHLYGTVLADVFARYQRLRGYD--VLFVTGTDEHGTKIEQKAEEEGVT------PQELCDKYHEIFKELF   79 (319)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH
T ss_conf             98788985533068899999999999965995--699687778708999999983998------7999999999999999


Q ss_pred             HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCC----------CCCCCCC--HHH-HHHH
Q ss_conf             7626854100012356--77778999998741143201289287522002454----------3224675--466-6643
Q gi|254780573|r  112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNY----------GSFSRRK--IDE-QKMG  176 (461)
Q Consensus       112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~Y----------G~Ls~~~--~~~-~~~g  176 (461)
T Consensus        80 ~~L~I~-~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~  158 (319)
T cd00814          80 KWLNIS-FDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLEEN  158 (319)
T ss_pred             HHCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHCC
T ss_conf             984998-7867667880689999999999997898888410263658876456466422637878899789999999609


Q ss_pred             H--------HCC-CCCCCCCCCCEE------EEECCCCCCCE-----E-ECCCC----CCCCCCCCHHHHHHHHHCCCCE
Q ss_conf             2--------102-222101235126------66337766631-----4-14677----6676433204777787529841
Q gi|254780573|r  177 T--------RVP-EKYHKKNPADFI------LWKRSTPMEPG-----W-ESPWG----RGRPGWHIECSAMSSHYLGKVF  231 (461)
Q Consensus       177 ~--------r~~-~~~~K~~p~DFa------LWK~~~~~e~~-----w-~spwG----~GRPGWHiECsam~~~~lg~~~  231 (461)
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~~~~~~~~~--~~~~~~  236 (319)
T cd00814         159 PDFIWPENARNEVLSWLKEGLKDLSITRDLFKWGIPVPLDPDKVIYVWFDALIGYISATGYYTDEWGNSWWW--NDPWPE  236 (319)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCC
T ss_conf             876468057788877654377720010355545898889888543002101234000146666656876444--568841


Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             48741356666875136688886408753012100343257642022332332140899850253345577799999998
Q gi|254780573|r  232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM  311 (461)
Q Consensus       232 DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~l  311 (461)
T Consensus       237 ~ih~~G~D-i~~~H~~~~~a~~~a~~-~~~~~~~~~~g~l~~~GeKMSKSlGN~i~~~dll-------~~~~~d~lR~~l  307 (319)
T cd00814         237 LVHFIGKD-IVPFHAIYWPAMLLGAG-LPLPTRIFAHGYLTVEGKKMSKSRGNVVDPDDLL-------ERYGADALRYYL  307 (319)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHCC-CCCCCEEEECCEEEECCEECCCCCCCCCCHHHHH-------HHCCCHHEHHHH
T ss_conf             26784476-43188878999998569-9878688870239989946377299744599999-------877913566877


Q ss_pred             HCCC-CCCCCCC
Q ss_conf             4256-6432114
Q gi|254780573|r  312 LMTH-YREPIDF  322 (461)
Q Consensus       312 Lssh-YRspLdf  322 (461)
T Consensus       308 ls~~p~~~~~~F  319 (319)
T cd00814         308 LRERPEGKDSDF  319 (319)
T ss_pred             HCCCCCCCCCCC
T ss_conf             616888899999