HHsearch alignment for GI: 254780573 and conserved domain: cd00814
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=0 Score=449.30 Aligned_cols=271 Identities=23% Similarity=0.238 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987
Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461)
Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461)
T Consensus 8 ~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~--V~~vt~~Dd~~~kIi~kA~~~g~~------~~el~~~y~~~~~~~~ 79 (319)
T cd00814 8 LPYVNGVPHLGHLYGTVLADVFARYQRLRGYD--VLFVTGTDEHGTKIEQKAEEEGVT------PQELCDKYHEIFKELF 79 (319)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH
T ss_conf 98788985533068899999999999965995--699687778708999999983998------7999999999999999
Q ss_pred HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCC----------CCCCCCC--HHH-HHHH
Q ss_conf 7626854100012356--77778999998741143201289287522002454----------3224675--466-6643
Q gi|254780573|r 112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNY----------GSFSRRK--IDE-QKMG 176 (461)
Q Consensus 112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~Y----------G~Ls~~~--~~~-~~~g 176 (461)
T Consensus 80 ~~L~I~-~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (319)
T cd00814 80 KWLNIS-FDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLEEN 158 (319)
T ss_pred HHCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHCC
T ss_conf 984998-7867667880689999999999997898888410263658876456466422637878899789999999609
Q ss_pred H--------HCC-CCCCCCCCCCEE------EEECCCCCCCE-----E-ECCCC----CCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 2--------102-222101235126------66337766631-----4-14677----6676433204777787529841
Q gi|254780573|r 177 T--------RVP-EKYHKKNPADFI------LWKRSTPMEPG-----W-ESPWG----RGRPGWHIECSAMSSHYLGKVF 231 (461)
Q Consensus 177 ~--------r~~-~~~~K~~p~DFa------LWK~~~~~e~~-----w-~spwG----~GRPGWHiECsam~~~~lg~~~ 231 (461)
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~~~~~~~~~--~~~~~~ 236 (319)
T cd00814 159 PDFIWPENARNEVLSWLKEGLKDLSITRDLFKWGIPVPLDPDKVIYVWFDALIGYISATGYYTDEWGNSWWW--NDPWPE 236 (319)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCC
T ss_conf 876468057788877654377720010355545898889888543002101234000146666656876444--568841
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 48741356666875136688886408753012100343257642022332332140899850253345577799999998
Q gi|254780573|r 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 (461)
Q Consensus 232 DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~l 311 (461)
T Consensus 237 ~ih~~G~D-i~~~H~~~~~a~~~a~~-~~~~~~~~~~g~l~~~GeKMSKSlGN~i~~~dll-------~~~~~d~lR~~l 307 (319)
T cd00814 237 LVHFIGKD-IVPFHAIYWPAMLLGAG-LPLPTRIFAHGYLTVEGKKMSKSRGNVVDPDDLL-------ERYGADALRYYL 307 (319)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHCC-CCCCCEEEECCEEEECCEECCCCCCCCCCHHHHH-------HHCCCHHEHHHH
T ss_conf 26784476-43188878999998569-9878688870239989946377299744599999-------877913566877
Q ss_pred HCCC-CCCCCCC
Q ss_conf 4256-6432114
Q gi|254780573|r 312 LMTH-YREPIDF 322 (461)
Q Consensus 312 Lssh-YRspLdf 322 (461)
T Consensus 308 ls~~p~~~~~~F 319 (319)
T cd00814 308 LRERPEGKDSDF 319 (319)
T ss_pred HCCCCCCCCCCC
T ss_conf 616888899999