HHsearch alignment for GI: 254780573 and conserved domain: cd00818
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.93 E-value=3e-25 Score=200.82 Aligned_cols=281 Identities=19% Similarity=0.192 Sum_probs=172.4
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHC-CCCCCC---C-------C
Q ss_conf 9996167888844411127999999999999970799845799605523-38889999870-898644---8-------8
Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQE-HPSIPI---N-------D 94 (461)
Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-dDkii~~a~~~-~~~~~~---~-------~ 94 (461)
T Consensus 4 ~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~--v~f~~G-tDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339)
T cd00818 4 VFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYY--VPRRPG-WDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCC-CCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf 9958998857873455889999999999999806998--877885-1440399999999964898730476559999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--HCCC-CCCCCCC
Q ss_conf 48999999999999987762685410---0012356777789999987411432012892875220--0245-4322467
Q gi|254780573|r 95 AISIITSKNTQQFVKDTTRLACLAPT---HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--SIPN-YGSFSRR 168 (461)
Q Consensus 95 ~~~~~a~~~~~~f~~d~~~L~v~~p~---~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--~~~~-YG~Ls~~ 168 (461)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~p~~~~~~~~~F~~l~~~ 160 (339)
T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPWPLIYRATPQWFIRVEKL 160 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCEECCCEEEECHHH
T ss_conf 99999999999999999983735147777121688999999999999998888626760536876005815679986899
Q ss_pred CHHHHH-HHHHCC--CCCCCCCCCCEEEEECCCC-CCCEEECCCCCCCCCCCCH-HHHH------------------HHH
Q ss_conf 546666-432102--2221012351266633776-6631414677667643320-4777------------------787
Q gi|254780573|r 169 KIDEQK-MGTRVP--EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIE-CSAM------------------SSH 225 (461)
Q Consensus 169 ~~~~~~-~g~r~~--~~~~K~~p~DFaLWK~~~~-~e~~w~spwG~GRPGWHiE-Csam------------------~~~ 225 (461)
T Consensus 161 ~-~~ll~~~~~~~~~p~~~~~~--~l~~~~~~l~Dw~ISR~~~WGipvP~w~~~~~~~~~~~~~~dv~yVWfDa~~~~~~ 237 (339)
T cd00818 161 K-DRLLEANDKVNWIPEWVKEG--RFGNWLENRRDWCISRQRYWGTPIPVWYSEDCGEVLVRRVPDVLDVWFDSGSMPYA 237 (339)
T ss_pred H-HHHHHHHHCCCEECCHHHHH--HHHHHHHCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCHHH
T ss_conf 9-99998775387378610664--99999716856504402666753463564899832100365017777635624898
Q ss_pred HCCC-----------CEEEEEECCCCCC--CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 5298-----------4148741356666--87513668888640875301210034325764202233233214089985
Q gi|254780573|r 226 YLGK-----------VFDIHGGGLDLIF--PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 (461)
Q Consensus 226 ~lg~-----------~~DIH~GG~DL~F--PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL 292 (461)
T Consensus 238 ~~~~~~~~~~~~~~~p~~~~~~GkDi~~~~f~~--~~~~~~~~~~~~P~~~v~~hg~~l~~~G~KMSKS~GnvI~p~~~l 315 (339)
T cd00818 238 QLHYPFENEDFEELFPADFILEGSDQTRGWFYS--LLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNVVDPQEVI 315 (339)
T ss_pred HCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHH--HHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf 728986431341387660566063312337999--999878854899852148898499999866278899878989999
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC-CCCCCCCC
Q ss_conf 0253345577799999998425-66432114
Q gi|254780573|r 293 ETKKFGGRSWPAPVIRLAMLMT-HYREPIDF 322 (461)
Q Consensus 293 ~~~~~~~k~y~p~viR~~lLss-hYRspLdf 322 (461)
T Consensus 316 -------~~y~~D~lRyyl~~~~~~~~D~~F 339 (339)
T cd00818 316 -------DKYGADALRLWVASSDVYAEDLRF 339 (339)
T ss_pred -------HHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf -------876947999999916888889999